The Role of an Animal-Like Cryptochrome in a Green Alga

Light is an essential environmental factor for photosynthetic organisms, serving as a source of energy and signal information. To precisely perceive and respond to different wavelengths of the light spectrum, eukaryotic photosynthetic microorganisms and higher plants have developed different classes of light-sensitive receptors, including phototropisns (PHOT), phytochromes and blue-light-absorbing cryptochromes (CRYs). Four CRYs are encoded in the green alga Chlamydomonas reinhardtii, including an animal-like CRY (aCRY) that also absorbs red light. Light conditions influence the sexual life cycle of Chlamydomonas.  Illumination, for example, provokes the transition from pregametes to gametes, which achieve full mating ability. The conversion from pregametes to gametes is mainly influenced by blue light, but to some extent also by red light, indicating the participation of blue and/or red light photoreceptors. These considerations led Zou et al. () to investigate whether aCRY is involved in the regulation of the sexual life cycle of C. reinhardtii. They show that aCRY plays an important role in the sexual life cycle of C. reinhardtii. aCRY acts in combination with the C. reinhardtii plant cryptochrome (pCRY) as a negative regulator for mating ability, opposite to the function of phototropin. In contrast, aCRY controls the vegetative germination of the alga in a positive manner, similar to the regulation of this process by PHOT and pCRY.

Phenotyping Water Deficit Acclimation Responses

Water deficit (WD) is one of the main environmental stress factors affecting crops and global food security. Acclimation to WD, however, enables plants to maintain growth under unfavorable environmental conditions. To shed light on the molecular mechanisms underlying WD acclimation, Rymaszewski et al. () investigated the natural variation of long-term acclimation to moderate and severe soil WD in 18 Arabidopsis accessions using PHENOPSIS, an automated phenotyping platform. Studies of plant acclimation to WD are labor intensive because they require frequent monitoring and correction of soil water content. Thus, it is essentially impossible to manually perform acclimation experiments on multiple plants at the same time. For plants grown in pots, this problem was solved by the development of plant phenotyping platforms such as PHENOPSIS, which enable automatic maintenance of soil water content and automated measurements of multiple plant traits. Using this technology, the authors investigated the long-term acclimation to constant WD at the morphophysiological and molecular levels in 18 Arabidopsis accessions isolated from different natural habitats. These accessions were chosen for study because they displayed differences in the transcript level of the drought response-related marker ANNEXIN (ANN1) in the absence of stress treatments. Plants were subjected to two severities of constant WD, in addition to well-watered (WW) controls. The authors measured a large subset of plant traits related to plant growth and water use to analyze for WD effects. In parallel, they performed expression analyses of a set of 16 genes related to physiological responses to WD. Contrary to most published studies, the transcript levels were analyzed after a long acclimation period using plant material collected before dawn to minimize the effect of circadian oscillations on transcript levels. As expected, severe WD conditions had a greater effect on most of the measured morphophysiological traits than did moderate WD conditions. The results, however, also revealed that different accessions displayed different types of acclimation responses to long-term WD and that morphophysiological traits, such as rosette area, transpiration rate, and rosette water content, were closely linked to expression levels of certain stress-response genes. The results point to the potential of using gene expression levels as a predictor of morphophysiological WD responses, which would be particularly useful for breeders because it would not be necessary to apply WD during the process of cultivar selection.

Auxin Regulates Growth of a Characean Alga

Auxin regulates many aspects of growth and development in land plants, but the origin and evolution of auxin signaling and response mechanisms remain largely unknown. Genome analyses of the moss Physcomitrella patens revealed the presence of the principal gene families involved in auxin homeostasis and signaling in tracheophytes, suggesting that the last common ancestor of land plants had already acquired the core auxin machinery of land plants. However, as we peer further back into phylogenetic time, things get murkier. To address this knowledge deficit, Ohtaka et al. () analyzed auxin responses in the charophyte alga Klebsormidium nitens, whose ancestor diverged from a green algal ancestor during the evolution of land plants. The authors have previously identified gene homologs for several auxin-biosynthesis and auxin signaling–related factors (TAA, YUCCA, PIN, AUX/LAX, and ABP1) in K. nitens; furthermore, the auxin indole-3-acetic acid (IAA) has been detected in K. nitens. On the other hand, a draft genome sequence suggested that K. nitens lacks the canonical TIR1-Aux/IAA-ARF–mediated auxin-signaling pathway found in land plants. The authors now report that exogenous IAA inhibits cell division and cell elongation in K. nitens as do inhibitors of auxin biosynthesis and inhibitors of polar auxin transport. Moreover, exogenous IAA rapidly induced expression of the LATERAL ORGAN BOUNDARIES-DOMAIN (LBD) transcription factor. These results suggest that K. nitens has acquired the part of the auxin system that regulates transcription and cell growth without the requirement for the central players that govern auxin signaling in land plants.

Is All Root Hair Development the Same?

Root hairs are long tubular extensions of root epidermal cells that greatly increase the root surface area and thereby assist in water and nutrient absorption. Root hairs are found in nearly all vascular plants, including angiosperms, gymnosperms, and lycophytes, and they exhibit similar cellular features, suggesting a common evolutionary origin. However, different plant species are known to vary in their root hair distribution patterns and their root hair morphology, implying that genetic differences exist in root hair development programs. Root hairs have been studied intensively in Arabidopsis. In particular, molecular genetic analyses have led to the identification of numerous root hair genes, which provide insight into the mechanisms of Arabidopsis root hair development. Root hair-bearing cells in Arabidopsis are specified by a set of early-acting patterning genes that generate a cell position-dependent distribution of root hair cells and non-hair cells via a complex transcriptional regulatory network. To understand the extent to which this program might operate in other plants, Huang et al. (10.1104/pp.17.00374) conducted a large-scale comparative analysis of root hair development genes from diverse vascular plants, including eudicots, monocots, and a lycophyte. Combining phylogenetics and transcriptomics, the authors have discovered conservation of a core set of root hair genes across all vascular plants, which may derive from an ancient program for unidirectional cell growth coopted for root hair development during vascular plant evolution. Interestingly, they also discovered diversification in the structure and expression of root hair development genes, relative to other root hair- and root-expressed genes, among these species. The greatest divergence appears to have occurred in the composition and expression of genes used for root hair patterning, suggesting that the Arabidopsis transcriptional regulatory mechanism is not shared by other species. Altogether, this broad analysis of gene expression in a single cell type across multiple species provides new insight into the conservation and diversification of plant cell differentiation programs in vascular plants.

A Possible Strategy for Increasing Methionine Titer in Seeds

Methionine is a nutritionally essential sulfur-containing amino acid found at low levels in plants and in their seeds. It often limits the nutritional value of crop plants as a source of dietary protein for humans and animals.  In plants, methionine plays key roles in protein synthesis and mRNA translation, and regulates indirectly a variety of cellular processes through its main catabolic product S-adenosylmethionine (SAM). SAM serves as the precursor for the synthesis of the plant hormone ethylene, polyamines and biotin, and donates a primary methyl group that is essential for methylation reactions involved in a variety of developmental processes in plant cells. Genetic and biochemical studies suggest that in seeds, methionine can be synthesized de novo as in vegetative tissues via the classical aspartate family pathway by the activity of its main regulatory enzyme, CYSTATHIONINE γ-SYNTHASE (CGS). However, isotope-labeling experiments suggest that methionine can be synthesized in seeds through an alternative pathway by which methionine produced in vegetative tissues is converted to S-methylmethionine (SMM) that is then transported via the phloem into the reproductive tissues where it is converted to methionine. Cohen et al. () have previously produced transgenic Arabidopsis RNAi seeds with lower transcript expression of CYSTATHIONINE γ- SYNTHASE (AtCGS) and found unexpectedly that the seeds accumulated significantly higher levels of methionine compared to controls. Using radiolabels, the authors now show that SMM synthesized in the rosette leaves of the RNAi plants significantly contributed to the accumulation of methionine in their seeds at late stages of development. Seed-specific repression of AtCGS in RNAi seeds triggered the induction of genes operating in the SMM cycle of rosette leaves leading to elevated transport of SMM towards the seeds, where higher reconversion rates of SMM-to-methionine were detected. The results of this study suggest new strategies for improving methionine contents in seeds.

Harnessing the hidden genetic diversity for improving multiple abiotic stress tolerance in rice

Ali et al. describe a rice breeding strategy to improve abiotic stress tolerance as well as to accelerate the speed to achieving homozygosity. The researchers named this particular technique as “Green Super Rice” (GSR) breeding technology. They use a backcross (BC) breeding approach to fix breeding lines which are tolerant of multiple abiotic stresses and also perform well under normal irrigated conditions to generate large set of improved and tolerant lines to abiotic and biotic stresses (introgression lines). Data from several lines grown in the field are described. (Summary by Sridhar Gutam)  PLoS One. 10.1371/journal.pone.0172515

Interrupting long nights by short pulses of light accelerates flowering in wheat

In order to address the knowledge gap in the mechanisms of photoperiodic induction of flowering by phytochrome, Pearce et al. studied flowering behavior in wheat grown under short days, with the interruption of the long nights by short pluses of light (night breaks). Their study showed that night breaks accelerate flowering, and also demonstrated that the response is mediated by photoperiod and phytochrome and requires both PHYB and PHYC. Night breaks affect the expression of PHOTOPERIOD1 (PPD1), which affects the expression of the flowering promoter FT1. (Summary by Sridhar Gutam) Plant Physiol. 10.​1104/​pp.​17.​00361

Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.)

This study by Ramamoorthy et al. showed that survival of plants under drought conditions is not a sufficient goal for breeding. Rather,  yield for biomass and food production under water deficit is a better target. Chickpea genotypes having better root growth and higher root density showed better grain filling, and produced good yields in these studies.  Some of the genotypes showed proper grain filling with better partition of photosynthates because of higher root density at deeper layers and higher root length at surface. (Summary by Sridhar Gutam)  Field Crops Res. 10.1016/j.fcr.2016.11.004 (Thumbnail image source Carl Davies, CSIRO)

For drought tolerance, is water use efficiency (WUE) no longer a recommended selection criteria for energy crops?

Podlaski et al. conducted experiments with energy crops like miscanthus, prairie cordgrass, willow, etc, and report that  water use efficiency (WUE) is no longer a valid trait for selecting energy crops for drought tolerance. They could not find any significant relationship  between  WUE  and  biomass  yield. However, they found a positive correlation between  soil water storage and the biomass  yield, and the response was highly differentiated among the crops under various vegetation seasons. (Summary by Sridhar Gutam)  Photosynthetica 10.1007/s11099-017-0697-0