Tag: Genomics

There are many accessions of Arabidopsis thaliana beyond the ecotypes predominantly used in research laboratories.  In this article, The 1001 Genomes Consortium describe a resource based on whole-genome sequencing of 1,135 A. thaliana genomes from Europe, North Africa, and North America.  This data…

Landraces are native varieties that have been selected for adaptation to their native environment, and as such they provide a wealth of largely unexplored genetic potential. Romero Navarro et al. used a new approach called F-one association mapping (FOAM) in combination with genome-wide association strategy…

There is much to be learned from comparing plant genomes, but as Rensing writes, currently available genomic data are skewed heavily towards angiosperms. He argues that a richer understanding of plant evolution depends upon gaining insights into the non-seed plants, including ferns, mosses and liverworts,…

Fultz and Slotkin explore the question of how transposable element (TE) silencing is initiated. As they describe, there are two recognized mechanisms, one based on TE identity (meaning that it can be silenced through siRNAs initiated from a related TE, and in which de novo silencing can occur in the…

There are about 50,000 fungal species that form mycorrhizal associations with about 250,000 plant species. These associations significantly increase plant productivity by increasing nutrient uptake, particularly nitrogen and phosphorus, although with a considerable carbon cost to plants. Van der Heijden…

There are more than 25,000 species in the Orchidaceae, the orchid family. Chao et al. have updated and restructured the Orchidstra database, which now houses more than half-a million protein-coding genes from 18 species (12 genera and five subfamilies). Access and explore it at http://orchidstra2.abrc.sinica.edu.tw.…

Marchantia polymorpha (a liverwort) is a living relative of the earliest terrestrial plants. As it has a simple genome and morphology and is readily transformable, it provides a good platform for synthetic biology (see https://www.openplant.org/marchantia/). Delmans et al. have designed an “engineering-oriented”…

Guest post by Kelsey Wood (@klsywd) a PhD student researching the genetics and genomics of plant-pathogen interactions at the University of California, Davis. I recently attended a Plant Pathology symposium on “Genomics Strategies for Developing Sustainable Disease Resistance for Neglected Crops…