Tag: Genomics

Omics approaches have helped shed light on how plants relate to their environment and how they respond to changes in it. Although still relatively underutilized, comparative transcriptomics and proteomics approaches also can be applied to study mechanisms of plant adaptation. Voelckel et al. discuss…

Plants produce scores of specialized metabolites (SMs) to attract or repel the organisms around them and to cope with life in a variable environment. For thousands of years, we have been exploiting these compounds to feed, heal, and adorn us. Many more SMs remain to be discovered: the chemical constituents…

A promoter is a region that “determines the position, direction, frequency, and timing of transcription”.  A cell can decode the sequence of the promoter to ensure appropriate transcription, but we still can’t. Tokizawa et al. performed a large-scale survey of promoters by sequencing regions upstream…

Many legumes are important crops, and to date ten legume genomes have been sequenced, including soybean, common bean, mung bean, and two species of wild peanut. Wang et al. used hierarchical comparative genomics analysis of the ten legume genomes, which enabled them to detected gene colinearity between…

Roughly 66 million years ago Earth was hit by a huge asteroid, resulting in climate changes that led to mass extinctions, most famously of the non-avian dinosaurs. This catastrophic event, which marks the boundary between the Cretaceous (K) and Paleogene (Pg) periods, also caused widespread mass extinctions…

Of the 3000 or so proteins housed in the chloroplast, we know the functions of only a few hundred. One approach to identify function is to first identify plastid proteins found exclusively in photosynthetic organisms. This subset, GreenCut2, is further subdivided by whether the proteins are found in…

Due to its highly repetitive, polyploid genome, wheat genomics has lagged behind that of other cereals, but new tools promise to begin closing that gap.  Uauy reviews these new tools, which include access to full genomes of several wheat varieties, gene expression data from hundreds of publicly available…

Teosinte, the ancestor of maize, grows in a range of environments in México. Teosinte parviglumis (Zea mays ssp parviglumis) is more prevalent in lowland regions while teosinte mexicana (Zea mays ssp mexicana) occupies highland territory (>2000 m above sea level). Admixture between parviglumis and…