Tag: Genomics

Rice (Oryza sativa) is derived from breeding of perennial wild ancestors with long stalks and few seeds to short plants with enlarged panicles (inflorescences). Many known domestication changes are due to changes in transcription factors or modulation of enzymatic actions. Recent work by Swetha et al.…

Desiccation tolerance is the property of being able to survive and recover from extreme dehydration. Although there are many desiccation-tolerant plant species, efforts to identify the genetic basis of desiccation tolerance have been limited by a lack of closely-related desiccation sensitive species.…

Expansion of plant genomes is thought to be linked to massive bursts of transposable elements activity. This implies consequences on the distribution of epigenetic modifications required for the silencing of the causative transposons. Consequences of transposon bursts have been extensively described…

Do you know the difference between a wine made from Pinot noir grapes and one made from Cabernet Sauvignon grapes? Most people can taste a difference, but to really understand the wines you might want to go a bit deeper through metabolomic and transcriptomic approaches, as done by Fasoli et al. (in a…

Sex chromosome restructure has happened frequently during the evolution of eukaryotes, often resulting in highly differentiated sex chromosomes. However, little is known about this process in plants. The wild North American octoploid strawberries (Fragaria) have separate sexes with homomorphic, female…

Numerous prokaryotic and eukaryotic genes have been identified as having homology to viral sequences. This phenomenon is the result of horizontal gene transfer (HGT) between viral pathogens and host cells. Chu and collaborators performed a proteome-wide analysis for the identification of viral domains…

Wheat is a tough nut to crack, as it is hexaploid, comprising three diploid genomes (the A, B and D genomes). The International Wheat Genome Sequencing Consortium has released a fully-annotated wheat reference genome, and Ramírez-González et al. present a thorough analysis of its transcriptome. Although…

Mine et al. use RNA-seq to study RPS2-mediated bacterial resistance https://doi.org/10.1105/tpc.17.00970 By Akira Mine, Carolin Seyfferth and Kenichi Tsuda Background: To fight against pathogens, plants can detect enemies and transduce the signal to reprogram gene expression in the cell as a defense…