Whole-genome sequencing reveals the extent of GC-biased gene conversion in plants and fungi ($)
Blog, Plant Science Research Weekly, Research, Research BlogGene conversion, a mechanism involving the unidirectional exchange of DNA from a donor to an acceptor sequence through homologous recombination, is a major driver of genome evolution. It has been speculated that gene conversion may be biased towards GC alleles, and thus favours accumulation of GC in…
Increased efficiency of targeted mutagenesis by CRISPR/Cas9 in plants using heat stress ($)
Blog, Plant Science Research Weekly, Research, Research BlogCRISPR/Cas9 genome editing has rapidly become a powerful tool in modern plant science research. However, issues of low editing efficiencies and off-target mutations remain. LeBlanc et al. hypothesised that subjecting plants to high temperature stress, mimicking the optimal operating temperature of…
A MicroRNA Affecting Grain Yield in Rice
Blog, Plant Physiology, Plant Physiology: On The Inside, Research, Research BlogMicroRNAs (miRNAs), a class of abundant small noncoding RNAs, have been identified as important regulators of gene expression in plants, affecting many aspects of plant development. Recently, several miRNAs have been reported to regulate rice grain yield. A previous study revealed that miR397 regulates…
Chemical Defenses of Maize Roots
Blog, Plant Physiology, Plant Physiology: On The Inside, Research, Research BlogOf the many classes of natural products produced by plants, terpenoids are the most structurally diverse, with well over 25,000 established compounds. In maize (Zea mays), terpene olefins are nearly ubiquitous components of induced volatile emissions following biotic stress. In contrast to our understanding…
Genetic components of root architecture remodeling in response to salt stress
Blog, Plant Science Research Weekly, Research, Research Blog
While everyone knows that salt stress reduces root growth, Julkowska and colleagues examined salt-stress induced changes in Root System Architecture (RSA) by studying 347 Arabidopsis accessions. The authors collected 17 RSA traits and developed an app allowing interactive exploration of collected…
Inhibition of RNA polymerase II allows controlled mobilization of retrotransposons for plant breeding
Blog, Plant Science Research Weekly, Research, Research BlogThe lack of acceptance of GM-breeding calls for alternative strategies to develop new crop varieties to feed the world's growing population. Moreover, the regulation of novel approaches for genome editing (CRISPR, TALEN) is still unclear and will potentially remain so for the near future (or will likely…
Recombination between members of Onsen family
Blog, Plant Science Research Weekly, Research, Research BlogPlant genomes are largely remnants of transposons of varying ages, some of which are presumed to be no longer capable of transposition. Sanchez et al. examined the family of Onsen retrotransposons to determine which members retain activity. They prompted transposition through heat treatment in a mutant…
Amplification of plant disease-resistance genes in pepper is intimately linked to transposon activity
Blog, Plant Science Research Weekly, Research, Research BlogPeppers are an economically and ecologically important crop plants, but genomic resources are rather scarce. The authors provide here new reference genome sequences for three species of hot pepper (Capsicum baccatum, C. chinense and C. annuum), identifying evolutionary forces that have shaped pepper…
How asparagus recently changed its lifestyle from hermaphroditism to distinct males and females
Blog, Plant Science Research Weekly, Research, Research BlogSex determination in the animal kingdom has been relatively well studied, with two main systems responsible for the sexes in mammals, insects, birds, reptiles and fish; XY and ZW sex-determination. Although much is still unknown about these systems, with many exceptions being discovered to previously…