Tag: Gene Regulation

Previous studies have shown that some genes use multiple promoters, but the extent to which this occurs has not been fully resolved. Ushijima et al. showed widespread phytochrome-mediated differential promoter use in response to light. They identified more than 2000 genes with light-dependent alternative…

The trade-off between grain size and number has been traditionally hard to break.  Bai et al established that differences in panicle architecture between two rice cultivars resulted from duplication of a long-distance silencer of the FRIZZY PANICLE (FZP) gene in one cultivar (Chuan 7).  Increased silencing…

A plant's rhizosphere consists of a huge array of pathogenic microbes many of which can trigger defense responses, leading to decreased growth. On the other hand, beneficial microbes such as rhizobacteria promote growth and can induce systemic resistance while suppressing local immune responses. A recent…

Walker et al. explore how the environment shapes root architecture. The Plant Cell 2017.  https://doi.org/10.1105/tpc.16.00961 By Liam Walker Background: To acquire nutrients and anchor themselves, plant roots spread both vertically and horizontally in soil. Plants typically have a primary root…

Transposable elements are known to affect their neighboring genes, but they were so far unknown to affect the function of distant genes. Cho and Paszkowski observed a high level of transposon transcription expressed in rice. A transposon with root specific expression, MIKKI, was found to contain an imperfect…

Plant growth and development are extremely adaptable to changes in the external environment, including nutrient status, light quality and intensity, and temperature. Thanks to their developmental plasticity, plants can also initiate new organs from differentiated tissue following wounding, to the benefit…

We all know that DNA is the stable nucleic acid, in comparison to its flighty, unstable cousin RNA, right? Well, unusual things happen when metabolic processes require DNA to unwind from its stable, redundant double-helical form. For example, during transcription, the RNA that exits RNA polymerase can…

Reynoso et al. describe the Isolation of Nuclei from TAgged specific Cell Types (INTACT) in rice. In this method, modified from one described previously in Arabidopsis and tomato, nuclei are labeled with a biotinylated nuclear-envelope anchored protein. Best results were obtained when a rice WIP (WPP-Interacting…