Recent Posts

Review: Light-harvesting antenna complexes in Physcomitrella patens: implications for evolutionary transition from green algae to land plants ($)

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The ancestors of land plants were aquatic. Myriad changes accompanied the transition from aquatic to terrestrial life, including changes necessitated by the difference in light intensity and quality. Bryophytes, the earliest diverging land plants, have some characteristics that reveal how plants transitioned…

The emergence, evolution, and diversification of the miR390-TAS3-ARF pathway in land plants ($)

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Trans-acting small interfering RNAs (tasiRNAs) are unique to plants. They are the products of TAS genes, but they function to regulate other genes (thus the name “trans-acting”). The production of tasiRNAs requires miRNAs, which bind to and ultimately lead to cleavage of the primary TAS transcript.…

Opinion: Ménage-à-trois hypothesis of plastid endosymbiosis ($)

It is well established that plastids are derived from the primary endosymbiosis of an ancient cyanobacterium into a eukaryotic host cell, but this understanding does not explain all of the evidence, nor does it explain how the nascent endosymbiont evaded the host cell's defense mechanisms. Recently,…

Genomic inferences of domestication events are corroborated by written records in Brassica rapa ($)

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There are many subspecies of Brassica rapa [including turnip (subsp. rapa) pak choi (subsp. chinensis) and Chinese cabbage (subsp. pekinensis)] but the relationships between the subspecies has remained uncertain. Qi et al. sequenced 143 accessions, including some subspecies for the first time. They then…

Signatures of adaptation in the weedy rice genome

Crop domestication has been accompanied by the evolution of aggressive weedy crop relatives that compete for resources and make weed management a challenge. By using whole-genome sequencing of the two most commonly found weedy rice strains in the US (SH and BHA), and comparing them with the genomes of…

Review: Ancient plant DNA in lake sediments

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Fossils have been extremely useful in efforts to reconstruct the past, but recently the analysis of ancient DNA (aDNA) has taken off.  Parducci et al. describe the value of lake sediments as sources of ancient DNA from which to gain insights into the plant populations of ancient times. Lakes are found…

Review: Insights into plant adaptation from transcriptomics and proteomics studies

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Omics approaches have helped shed light on how plants relate to their environment and how they respond to changes in it. Although still relatively underutilized, comparative transcriptomics and proteomics approaches also can be applied to study mechanisms of plant adaptation. Voelckel et al. discuss…

Could plants be sentient?

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Sentience, the capacity to feel subjectively, is considered limited to organisms that have a nervous system and a centralized brain. Plants, therefore, have been excluded from this group based on: lack of a transmission mechanism like the animal nervous system; lack of a brain; simplicity; and inability…

Hierarchically aligning 10 legume genomes establishes a family-level genomics platform

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Many legumes are important crops, and to date ten legume genomes have been sequenced, including soybean, common bean, mung bean, and two species of wild peanut. Wang et al. used hierarchical comparative genomics analysis of the ten legume genomes, which enabled them to detected gene colinearity between…