Division of labor during apical hook formation

Soon after dicots germinate, the hypocotyl arches into a hook-like structure that protects the shoot apical meristem as the seedling grows through the soil. Once the seedling emerges from the ground and senses light, the hypocotyl straightens. The asymmetric growth that results in apical hook formation depends on an auxin gradient; auxin response maxima in the hypocotyl locally reduce cell elongation, resulting in hypocotyl bending. Members of the auxin influx carrier AUX/LIKE-AUX1 (LAX) and efflux carrier PIN-FORMED (PIN) families, which direct polar auxin transport and thus influence the distribution of auxin, have been implicated in apical hook formation (Vandenbussche et al., 2010). Trans-Golgi network (TGN)-localized ECHIDNA (ECH) mediates the secretion of AUX1 during apical hook formation (Boutte et al., 2013), whereas members of the GNOM and BIG ADP-ribosylation factor-guanine exchange factor (ARF-GEFs) families function in the post-Golgi trafficking of PIN1, with the former mediating its polar recycling (Geldner et al., 2003) and the latter its secretion. Evidence suggests that a Brefeldin-A (BFA)-resistant ARF-GEF also functions in AUX1 trafficking (Kleine-Vehn et al., 2006). Ethylene promotes apical hook formation by regulating auxin responses and distribution (Harper et al., 2000).

To tease apart the molecular mechanism underlying apical hook formation, Jonsson et al. (2017) examined the contribution of ECH and ARF-GEFs to this process in Arabidopsis thaliana seedlings. Using a series of mutants and pharmacological treatments, they showed that the BIG1–4 ARF-GEFs act redundantly to maintain the apical hook once it has formed. Treatment with the ethylene precursor aminocyclopropane-1-carboxylate (ACC), which normally exaggerates the apical hook, had no effect when BIG function was perturbed, suggesting that BIG ARF-GEFs function in ethylene-mediated hook development.

Given that apical hook development is insensitive to ethylene in both the big and ech mutants, and that both BIG and ECH proteins localize to the TGN (Boutte et al., 2013), the authors tested the possibility that these proteins function in a common pathway during apical hook development. The finding that hook developmental defects were more pronounced in the ech big2 big3 triple mutant than in ech or big2 big3 suggests that ECH and BIG proteins indeed act synergistically in apical hook development. By monitoring AUX1-YFP levels in transgenic lines in the wild-type and big3 background, the authors then showed that AUX-YFP levels were greatly reduced at the plasma membrane of the mutant, whereas transcript levels were only mildly reduced. Thus, BIG3—like ECH—mediates the secretion of AUX1 during apical hook formation. Further mutant studies using fluorescently-tagged ECH and AUX1 revealed that the colocalization of these proteins to the TGN is interdependent. Next, the authors examined the role of ARF1, which functions in vesicle formation and is the target ARF GTPase of BIG3 (Nielsen et al., 2006). They found that ARF1 localized to the TGN in a BIG- and ECH-dependent manner and that, like BIG and ECH, ARF1 functions in ethylene-mediated apical hook development and is required for the delivery of AUX1 to the plasma membrane.

The authors weaved these findings into an elegant model (see figure), in which ECH and BIG recruit ARF1 to the TGN, where it mediates the vesicle formation needed for AUX1 delivery to the plasma membrane during ethylene-responsive apical hook development.

IN BRIEF  by Kathleen L. Farquharson [email protected]

References

Boutte, Y., Jonsson, K., McFarlane, H.E., Johnson, E., Gendre, D., Swarup, R., Friml, J., Samuels, L., Robert, S., and Bhalerao, R.P. (2013). ECHIDNA-mediated post-Golgi trafficking of auxin carriers for differential cell elongation. PNAS 110, 16259–16264.

Geldner, N., Anders, N., Wolters, H., Keicher, J., Kornberger, W., Muller, P., Delbarre, A., Ueda, T., Nakano, A., and Jurgens, G. (2003). The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112, 219–230.

Harper, R.M., Stowe-Evans, E.L., Luesse, D.R., Muto, H., Tatematsu, K., Watahiki, M.K., Yamamoto, K., and Liscum, E. (2000). The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. The Plant Cell 12, 757–770.

 Jonsson, K., Boutté, Y., Singh, R.K., Gendre, D., Bhalerao, R.P. (2017). Ethylene Regulates differential growth via BIG ARF-GEF-dependent post-Golgi secretory trafficking in Arabidopsis. The Plant Cell:  tpc.00743.2016.

Kleine-Vehn, J., Dhonukshe, P., Swarup, R., Bennett, M., and Friml, J. (2006). Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. The Plant Cell 18, 3171–3181.

 Nielsen, M., Albrethsen, J., Larsen, F.H., and Skriver, K. (2006). The Arabidopsis ADP-ribosylation factor (ARF) and ARF-like (ARL) system and its regulation by BIG2, a large ARF-GEF. Plant Sci 171, 707–717.

Vandenbussche, F., Petrasek, J., Zadnikova, P., Hoyerova, K., Pesek, B., Raz, V., Swarup, R., Bennett, M., Zazimalova, E., Benkova, E., and Van Der Straeten, D. (2010). The auxin influx carriers AUX1 and LAX3 are involved in auxin-ethylene interactions during apical hook development in Arabidopsis thaliana seedlings. Development 137, 597–606.

Sabeeha Merchant, Editor-in-Chief

Areas of expertise
Chlamydomonas, chloroplast biology, metabolic regulation, transcriptomics, proteomics, micronutrients.

Sabeeha Merchant is a Professor of Biochemistry and a member of the Molecular Biology Institute at the University of California, Los Angeles. She completed BS and PhD degrees at the University of Wisconsin-Madison and was a Post-doctoral Scholar at Harvard University. She has conducted seminal research on the role of metals in regulating the biosynthesis and assembly of metalloproteins in photosynthetic eukaryotes, and pioneered discoveries in the assembly of metalloenzymes and the regulated biogenesis of major complexes of the photosynthetic apparatus in green algae. At present, the Merchant group uses a combination of classical genetics, genomics and biochemistry to discover mechanisms of trace metal homeostasis in Chlamydomonas. Recent work involves exploiting next generation sequencing technology (RNA-Seq) to define the transcriptome of wild-type and mutant Chlamydomonas strains under various nutrient, environmental, and developmental conditions with the goal of identifying the pattern of expression of every gene in the genome, divining co-expressed genes and key cis-regulatory sequences, and using transcriptome information for genome annotation.
Areas of expertise: Chlamydomonas, chloroplast biology, metabolic regulation, transcriptomics, proteomics, micronutrients.

Editorial experience
Photosynthesis Research, Editorial Board (1995-); Annual Review of Plant Biology, Editor (2003-2018); Eukaryotic Cell, Editor (2003-2013); Trends in Plant Science, Editorial Board (2009-2012); Plant Cell, Co-editor (2002-2004), Editor in Chief (2015-)

Honors and awards include
National Institutes of Health Research Career Development Award; UCLA Faculty Career Development Awards; Guggenheim Foundation Fellow; ASPB Charles Albert Shull Award; UCLA Herbert Newby McCoy Award; AAAS Fellow; ASPB Fellow; NAS Gilbert Morgan Smith Medal; ASPB Charles F. Kettering Award, Humboldt Forschungspreis (Alexander von Humboldt Foundation), Darbaker Prize from the Botanical Society of America, Elected member of the U.S. National Academy of Sciences and American Academy of Arts and Sciences.

Read more about The Plant Cell Editorial Board here.

Blake Meyers, Senior Editor

Areas of expertise
Genomics, microRNAs, bioinformatics, epigenetics.

Blake Meyers is a member at the Donald Danforth Plant Science Center in St. Louis, and a Professor at the University of Missouri, Columbia. He completed his BA degree at the University of Chicago and his MS and PhD degrees at the University of California, Davis. Previously, he was a Professor and Chair of the Department of Plant and Soil Sciences at the University of Delaware. His research examines the roles of small RNAs, particularly in epigenetic regulation of gene expression, as well as microRNAs and their biogenesis, in various model and crop plants. Recent work has examined phased, small interfering RNAs, their evolution and biogenesis, and their roles in reproductive biology and in post-transcriptional controls. The Meyers lab also specializes in developing genomics tools and bioinformatics.

Editorial experience
Plant Cell, Reviewing Editor (2008-); Editorial Board Member: Tropical Plant Biology (2007-), Rice (2007-), Current Opinion in Plant Biology (2010-).

Honor and awards include
​ISI Highly Cited Researcher (2014, 2015); elected fellow of the AAAS (2012); Edward F. and Elizabeth Goodman Rosenberg Professor (2010-2015); elected member (2009-2013) and President (2012-2013) of the North American Arabidopsis Steering Committee.

Read more about The Plant Cell Editorial Board here.

Dan Kliebenstein, Senior Editor

OLYMPUS DIGITAL CAMERA

Areas of expertise
Metabolic regulation, secondary metabolism/natural products, statistical genetics, transcriptome and metabolome analysis, plant–biotic interactions.

Dan Kliebenstein is a Professor of Plant Sciences at the University of California, Davis. He completed a BS degree at Iowa State University and a PhD degree at Cornell University and was a Postdoctoral Scholar at the Max Planck Institute for Chemical Ecology. Dr. Kliebenstein has done groundbreaking work in the field of biochemical genomics in an effort to examine the amazing diversity of secondary metabolites in plants, primarily Arabidopsis, with a focus on the role of secondary metabolites in plant–fungal and plant–insect interactions. The Kliebenstein group uses both primary and secondary metabolites as phenotypes to help elucidate the cause of genetic variation in organisms. He has developed network-based algorithms to rapidly identify causal genes using QTL mapping and genome-wide association approaches that can be used in any species. He is currently developing the model fungal plant pathogen Botrytis cinerea to further examine the role of secondary metabolites in plant–pathogen interactions.

Editorial experience
The Arabidopsis Book, Assistant Editor (2009-); Plant Cell, Reviewing Editor (2011-2014), Senior Editor (2015-); eLife, Associate Editor (2012-); Frontiers in Plant Systems Biology, Associate Editor (2011-); Frontiers in Plant Pathology, Associate Editor (2011-); PLOS Computational Biology, Guest Editor (2014); PLOS Genetics, Guest Editor (2010-2014); PLOS One, Associate Editor (2010-2014).

Honors and awards include
2010-2012 Velux Visiting Professor, University of Copenhagen.

Read more about The Plant Cell Editorial Board here.

Joseph Kieber, Senior Editor

Areas of expertise
Phyothormones, cytokinin, ethylene, auxin, cell wall, receptor-like kinases, genetics.

Joseph Kieber holds a PhD from the Massachusetts Institute of Technology and is a Professor of Biology at the University of North Carolina at Chapel Hill. His group uses the model plants Arabidopsis thaliana and Oryza sativa to examine the biosynthesis, perception, signaling, and physiological functions of the phytohormones cytokinin and ethylene. His lab also studies cell wall biosynthesis and function. The goal is to understand how signaling pathways interact to regulate plant growth and development.

Editorial experience
Plant Cell, Reviewing Editor (2015-); Plant Signaling & Behavior, Editor (2005-); PLoS Genetics, Guest Editor (2012, 2013); Current Opinions in Plant Biology, Guest Editor (2005-2006); Plant Physiology, Editor (2003-2009); Journal of Plant Growth Regulation (1999-2005); Journal of Experimental Botany (1996-2000).

Honors and awards include
Elected AAAS Fellow; NSF postdoctoral fellowship in Plant Biology.

Read more about The Plant Cell Editorial Board here.

Jean Greenberg, Senior Editor

Areas of expertise
Disease resistance, cell death, plant pathogens.

Jean Greenberg is a Professor in the Molecular Genetics and Cell Biology Dept. University of Chicago, Committee on Genetics, Genomics and Systems Biology, and Committee on Microbiology. Her work examines both sides of the plant-pathogen interaction, including pioneering studies on cell death and disease resistance in plants, systemic signaling and on the roles of Type III secretion and effectors in disease caused by Pseudomonas syringae and other pathogens. At present, the Greenberg lab has extended these studies to define the roles of key defense metabolites and proteins, such as azelaic acid and AZI1 involved in defense priming. Additional new work examines how secreted effectors help P. syringae colonize a unique niche, the leaf surface, and how effectors post-translationally modify host defense proteins to cause disease.

Editorial experience
Plant Cell, Co-editor (2004-2009), Senior Editor (2010-); Molecular Plant-Microbe Interactions, Associate Editor (1997-2000); Molecular Plant Pathology, Senior Editor (1999-2002); Special issue of Plant Molecular Biology on Programmed Cell Death in Plants, Co-editor (July, 2000); Plant Physiology Monitoring Editor (2000-2004); Journal of Bacteriology, Editorial Board (2004-2006); Plant Journal Editorial Board (2004-2007); Faculty of 1000, Advisory Board (2008-); eLIFE, Editor (2012-); Annual Review of Plant Biology, Editorial Board guest member (2013).

Honors and awards include
American Cancer Society Research Fellow (1996-1999), Pew Biomedical Scholar (1996-2001).

Read more about The Plant Cell Editorial Board here.

Nancy Eckardt, Senior Editor

Areas of expertise
Large-scale biology, plant molecular biology and physiology, photosynthetic carbon reduction, plant stress responses.

Nan completed her PhD in the Plant Physiology program at Penn State University in 1993. She carried out postdoctoral research in photosynthesis, focusing on Rubisco and Rubisco activase, with William Ogren and Archie Portis at the University of Illinois from 1993-1995, followed by brief postdoctoral appointments at Penn State (1996) and Oxford University in the UK (1997). She returned to Penn State as a research associate and was a co-principal investigator on one of the first NSF Plant Genome awards (Tools for Plant Functional Genomics) with PI Nina Federoff from 1998-2000. She worked on developing microarray technology at Penn State and carried out experiments and large-scale data analysis on transcriptomics of plant response to biotic and abiotic stress. She took the position of News and Reviews Editor at the Plant Cell in 2000, and has been Senior Features Editor since 2009, and Senior Editor for the Large-Scale Biology section since its inception in 2011.

Read more about The Plant Cell Editorial Board here.

Pascal Genschik, Senior Editor

Areas of expertise
ubiquitination, CULLIN-ring ligases, autophagy, cell cycle, DNA repair, epigenetic regulation, phytohormones, RNA silencing.

Pascal Genschik holds a PhD and a Habilitation from the University of Strasbourg, France. Since 1997, he has been a group leader at the Institute of Molecular Plant Biology in Strasbourg. He studies various aspects of plant growth and development. His group has identified key components of the ethylene, abscisic acid, and gibberellin signaling pathways in the model plant Arabidposis. Recent work focuses on the cell cycle, epigenetic regulation, and autophagy. A major 5-year goal of his group is to unravel the post-translation regulation of core components of the machinery for RNA-mediated silencing.

Editorial experience
Plant Cell, Reviewing Editor (2004-); Plant Physiology and Biochemistry, Editorial board (2003-2006).

Honors and awards include
ERC Advanced Grantee (LS3); Wissenschaftspreis, University Freising; Elected member of EMBO; GAUTHERET Prize, French Academy of Sciences.

Read more about The Plant Cell Editorial Board here.

George Coupland, Senior Editor

Areas of expertise
Plant development, environmental regulation of development, flowering time, Arabidopsis, transcriptional regulation, evolutionary genetics.

George Coupland is Director of the Department of Plant Developmental Biology at the Max Planck Institute for Plant Breeding Research in Cologne, Germany, a position he has held since 2001. He earned his PhD from University of Edinburgh, and was postdoctoral fellow at University of Cologne. He was Research Group Leader at the Plant Breeding Institute, Cambridge, from 1989 to 1990, and served as a Research Group Leader at the John Innes Centre from 1990 to 2001. He has conducted seminal work in Arabidopsis on understanding the molecular mechanisms by which plants detect day length and use this information to trigger flowering. His work is also focused on discovering how this process interacts with responses to other environmental signals such as temperature. More recently, he has studied the control of flowering in perennial relatives of Arabidopsis and how annual and perennial species diverge during evolution.

Editorial experience
Plant Cell, Senior Editor (2016-); Planta, Editorial Board (2010- ); Development, Editorial Board (1997-2013).

Honors and awards include
Fellow of the Royal Society (May 2007), Foreign Associate of the US National Academy of Sciences (May 2012).

Read more about The Plant Cell Editorial Board here.