Spotlight: Super-pangenomes for improved breeding
Plant Science Research WeeklySometimes more really is better, and I think it’s safe to say that when it comes to genomic information, more is better. Here, Raza et al. highlight the great value of super-pangenomes. A pan-genome is defined as the entire set of genes within a species, created by combining sequences of many individuals.…
Chloroplast proteostasis prevents aggregation of Huntington’s disease-causing human polyQ protein
Plant Science Research WeeklyCertain human neurodegenerative disorders are caused by aggregation of disordered proteins. In particular, Huntington’s disease is caused by aggregation of a protein called huntingtin, which contains long stretches of glutamine (Q). Llama et al. observed that proteins with long stretches of glutamine…
Altering chloroplast biogenesis leads to increased yields in rice
Plant Science Research WeeklyTranscription of chloroplast genes is carried out by the plastid encoded polymerase (PEP) with help from PAPs (PEP-associated proteins). PAP3 is important for chloroplast development in Arabidopsis thaliana and Nicotiana benthamiana, however its role in crops has not been fully elucidated. Here Seo et…
Staining starch granules in living plants
Plant Science Research WeeklyStarch granules are synthesized in the leaves of chloroplast during the day and degraded in the subsequent night. To visualise starch granules the tissue usually has to be fixed, which prevents live imaging. Here Ichikawa et al. set out to find a highly specific dye to image starch granules in living…
When and how did carrots turn orange?
Plant Science Research WeeklyCarrots were not always orange, and a new paper by Coe, Bostan, Rolling et al. sheds new light into the history of carrot domestication and improvement, i.e., how we went from white, knotty carrots to the orange, smooth ones that are now consumed all over the world. The authors published a new version…
Physcomitrium patens responses to elevated CO2 and nitrogen
Plant Science Research WeeklyWith atmospheric CO2 levels increasing 100 times faster than historical levels, much attention has been paid to how crop plants respond to this elevated CO2 (eCO2). For angiosperms, eCO2 leads to increased CO2 assimilation and decreased photorespiration, but over time plants can adapt, leading to lower…
Single-nucleus sequencing reveals transition from C3 to C4 photosynthesis
Plant Science Research WeeklySometime in the Cretaceous period (dinosaur time!), some monocots acquired a special pathway for carbon fixation, rendering them more efficient particularly in hot or dry environments. In most monocots, carbon is fixed by Rubisco in the mesophyll cells. In the innovative pathway, carbon fixation is split…
A dirigent protein complex directs lignin polymerization and assembly of the root diffusion barrier
Plant Science Research WeeklyIn Latin, dirigere means “to align or guide”, so in 1997 when a protein was identified that guides the stereoselectivity of another enzyme it was named as a dirigent protein. Subsequent studies found that the Arabidopsis genome encodes 25 dirigent proteins (DPs). In this new work, Gao et al. characterized…
Bacterial tolerance to host-exuded specialized metabolites structures the maize root microbiome
Plant Science Research WeeklyBenzoxazinoids (BXs) are alkaloid specialized metabolites produced by important crops like maize. Their role in shaping the root and rhizosphere microbiomes and in plant defense against pest and pathogens is well known, although the mechanism remains unknown. One of the major BXs produced by maize is…