
Microtubule regulation in the moss Physcomitrella patens
Research, The Plant Cell: In a NutshellLeong et al. examine the roles of Kinesin-13 and -8 in moss mitosis.
Plant Cell https://doi.org/10.1105/tpc.19.00521
By Shu Yao Leong (Nagoya University, currently Eberhard Karls University of Tübingen) & Moé Yamada (Nagoya University)
Background: Microtubules (MTs) are dynamic macromolecular…

Review: Deep learning for plant genomics and crop improvement (Curr. Opin. Plant Biol.)
Plant Science Research WeeklyOne of the goals of plant science is to use the molecular phenotype (genome, transcriptome, proteome) to predict the whole-plant phenotype. Deep learning approaches can potentially begin to do this, starting with a training dataset, and testing it with a validation dataset. Wang et al. review advances…

Review: Methods to visualize elements in plants (Plant Physiol)
Plant Science Research Weekly
Plant Science Research Weekly: February 14
February 14, 2020/in Blog, WWR Full Post /by Mary Williams
Review: Deep learning for plant genomics and crop improvement
One of the goals of plant science is to use the molecular phenotype (genome, transcriptome, proteome) to predict the…

Review. Flowering plants in the Anthropocene: A political agenda (Trends Plant Sci)
Plant Science Research WeeklyFor the past 100 million years, flowering plants have been the main producers of land biomass. They also are indirectly responsible for the origin of agriculture, setting the ball rolling for the onset of the Anthropocene. Negrutiu et al. argue that the accompanying rapid global changes require a reconsideration…

A two-way molecular dialogue between embryo and endosperm is required for seed development ($) (Science)
Plant Science Research WeeklyDuring seed formation, the developing embryo becomes covered with a water-impermeable cuticle. Several Arabidopsis mutants have been identified that are defective in cuticle formation and provide a framework for how it is formed. Doll et al. have added a missing piece to this puzzle. Briefly, embryo…

Central clock components modulate plant shade avoidance by directly repressing transcriptional activation activity of PIF proteins ($) (PNAS)
Plant Science Research WeeklyPHYTOCHROME INTERACTING FACTORs (PIFs) are transcriptional factors that relay light signals from the phytochrome photoreceptors to regulate the expression of light-sensitive genes, but there is not a direct correlation between PIF binding and expression of the target genes. In this paper, Zhang Y et…

Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice ($) (Science)
Plant Science Research WeeklyThe well-known success of the green-revolution was accomplished through the development of semi-dwarf grasses (rice and wheat), which led to decreased losses to lodging and higher yields; however, the benefits of these improved varieties depends on the application of nitrogen-rich fertilizer. As N-rich…

DIX domain polymerization drives assembly of plant cell polarity complexes (Cell)
Plant Science Research WeeklyIn multicellular organisms like plants, asymmetric cell division can arise from cell polarity. The signals that establish cell polarity relative to the body axis are unknown in plants. In Arabidopsis, SOSEK1 was previously identified as having a polar distribution. SOSEK1 has a DIX domain similar to…

Rhizosphere microbiome mediates systemic root metabolite exudation ($) (PNAS)
Plant Science Research WeeklyRoots exude metabolites that affect the composition and activities of their microbiome. Korenblum et al. show that the microbiome in turn affects metabolite exudation, not only locally but also systemically (shown using a split-root system). They call this response SIREM: systemically induced root exudation…