Roots exude metabolites that affect the composition and activities of their microbiome. Korenblum et al. show that the microbiome in turn affects metabolite exudation, not only locally but also systemically (shown using a split-root system). They call this response SIREM: systemically induced root exudation of metabolites. For example, the presence of Bacillus bacteria triggers exudation […]
If you want a great plant, select for a strong, vigorous, high-yielding individual; this is also the outcome of natural selection. But if you want a great field of plants, these traits may not be as suitable, because the plants will expend energy competing between themselves. When seeds from many plants are used to start […]
Review: Deep learning for plant genomics and crop improvement One of the goals of plant science is to use the molecular phenotype (genome, transcriptome, proteome) to predict the whole-plant phenotype. Deep learning approaches can potentially begin to do this, starting with a training dataset, and testing it with a validation dataset. Wang et al. review […]
Cotton (Gossypium spp.) provides the world’s most important natural fiber, and I suspect with our growing realization of the problems with plastics there will be still more demand for it. Yang et al. review the current state of Gossypium genomics. As a crop that has been domesticated for millennia, it’s not surprising that its genomic […]
A cybrid is a cytoplasmic hybrid; in other words, a cell or organism in which the cytosolic genomes (mitochondria and plastid) have a different origin than the nuclear genome; the nuclear genome is inherited solely from the paternal parent, and the cytosolic genomes from the maternal parent. Starting with a chance observation and a fortuitous […]
Lycophytes, including the model species Selaginella moellendorffii, are extant (still alive today) seedless vascular plants that were particularly abundant around 400-300 million years ago (and major contributors to the formation of coal). To further understand the biology of some of these oldest extant vascular plants, Ferrari et al. generated a comprehensive RNA sequencing-based expression atlas, […]
Plants have strategies to cool themselves when the temperature is hot. These include increasing their rate of transpirational cooling through stomatal opening and raising their leaves, which can enhance air flow. Previous studies have shown a role for the heat shock proteins (HSPs) and their cochaperone SGT1 in mediating this response, in part through stabilizing […]
Urban gardens are a great way to introduce people to plant science, to bring fresh food into areas underserved by grocery stores (“food deserts”), and can promote a sense of community. But as Cooper et al. observe, many potential sites can be contaminated with heavy metals (lead, cadmium) and metalloids (arsenic, As) as a consequence […]
Review. Gossypium genomics: Trends, scope, and utilization for cotton improvement Cotton (Gossypium spp.) provides the world’s most important natural fiber, and I suspect with our growing realization of the problems with plastics there will be still more demand for it. Yang et al. review the current state of Gossypium genomics. As a crop that has […]