Tag: Genomics

The ever-increasing amount of data available to researchers has come with similarly increasing cognitive loads in efforts to use these data. Even when data sets are stored in well-curated databases, it can be time-consuming to master the specific tools harbored at each site and cumbersome to move between…

A plant’s life begins with the fusion of haploid egg and sperm cells to produce a diploid zygote. Many of the processes that control early development are under the control of the maternal genome, but at some point there is a shift towards zygotic control. Chen et al. investigated when this shift occurs…

Many plants are not simple diploids (two copies of each chromosome) but are instead are the result of various forms of polyploidization (for example, whole-genome duplication or interspecific hybridization). Polyploidization can disrupt well-established controls over gene expression levels, transposon…

CAM (crassulacean acid metabolism) is the form of photosynthesis in which carbon assimilation occurs at night. CAM allows plants, especially those growing in arid regions, to avoid excessive water loss. With the long-term goal of eventually engineering this water-conserving trait into crop plants, Wai…

The fungal pathogen  Hymenoscyphus fraxineus that infects European ash (Fraxinus excelsior) has caused a huge epidemic and cost millions of trees their lives. Downie describes the employment of molecular techniques to trace the origin of the fungus in Europe, and describes how the fungal life cycle…

Li et al. describe an important new genetic resource, a huge database of Kitaake rice mutants. Kitaake is a short-generation variety of Oryza sativa L. ssp. japonica well suited for genetic studies. The authors sequenced more than 1500 fast-neutron-induced mutants and identified more than 91,000 mutations…

Precise genome editing holds tremendous promise for meeting future food security needs and sustainable agriculture. Čermák et al. describe a set of reagents that facilitate genome editing in plants, based on both TALEN (Transcription Activator-Like Effector Nucleases) and CRISPR/Cas technologies. Precise…

Sunflower (Helianthus annuus L.) is an important oil crop and, according to the authors, “the only major crop domesticated in North America.” Assembling its genome has been difficult as more than three quarters of it is made up of young (less than one million years old) long-terminal repeat retrotransposons.…