Tag: Gene Regulation

Structural biology provides a key link between genotype and phenotype. Hirano et al. probe the structure of a heterodimer of plant-specific GRAS family transcriptional regulators [SHORT-ROOT (SHR) and SCARECROW (SCR)] as bound to the transcription factor JACKDAW (JKD). The GRAS family proteins (encoded…

Chemical genetics is an approach that enables small molecules with specific effects on phenotypes to be identified. Through a screen for small molecules that would reverse the inhibitory effect of ABA on seed germination, Ye et al. identified AA1 (ABA Antagonist 1). AA1 interferes with the interaction…

Like other organisms, plants have developed mechanisms to sense and respond to changes in the availability of nutrients. Nitrogen (N), being very essential for the growth and development of plants, must also be strongly monitored by plants. N sensing and signaling in plants are highly researched topics,…

Vernoux and Robert discuss research presented at the Auxin 2016 meeting, held in October 2016 on the island of Hainan, China. The result is a nice review of very current research, spanning auxin metabolism and signaling, the role of auxin in development, interactions between auxin and other signals,…

IN BRIEF by Jennifer Mach jmach@aspb.org To navigate its essential function of producing mRNAs, RNA polymerase II (Pol II) must navigate the thread of DNA, which winds around thousands of nucleosomes. If you’ve ever tried to use a sewing machine but got your bobbin thread tangled, then the task faced…

Fultz and Slotkin explore the question of how transposable element (TE) silencing is initiated. As they describe, there are two recognized mechanisms, one based on TE identity (meaning that it can be silenced through siRNAs initiated from a related TE, and in which de novo silencing can occur in the…

Familiar citrus fruits such as sweet orange, lemon, lime and grapefruit are hybrids of three species: Citrus reticulate (mandarin), C. medica (citron), and C. maxima (pummelo). Cultivated varieties are generally vegetatively propagated, with diversity arising from spontaneous or induced somatic mutations.…

The indigenous Chinese rice variety Gumei 4 (GM4) shows durable and specific resistance to the rice blast fungal pathogen Manaporthe oryzae. Deng et al. mapped and sequenced the resistance locus Pigm, and found that it contains a cluster of 13 NLR (nucleotide-binding leucine-rich repeat) genes, three…