Insights into Calmodulin-Interacting Proteins

Calmodulin (CaM) and closely related CaM-like polypeptides are principal sensors of Ca2+ signals. The plant-specific IQ67 DOMAIN (IQD) family has emerged as possibly the largest class of CaM-interacting proteins with undefined molecular functions and biological roles. Bürstenbinder et al. (Plant Physiol. 173: 1692–1708) show that the 33 members of the IQD family in Arabidopsis differentially localize to multiple and distinct subcellular sites, including microtubule (MT) arrays, plasma membrane subdomains, and nuclear compartments. Intriguingly, the various IQD-specific localization patterns coincide with the subcellular patterns of IQD-dependent recruitment of CaM, suggesting that the diverse IQD members sequester Ca2+-CaM signaling modules to specific subcellular sites for precise regulation of Ca2+-dependent processes. Because MT localization is a hallmark of most IQD family members, the authors quantitatively analyzed GFP-labeled MT arrays in Nicotiana benthamiana cells transiently expressing GFP-IQD fusions and observed IQD-specific MT patterns, which point to a role of IQDs in MT organization and dynamics. Indeed, misexpression of select IQD proteins in Arabidopsis altered cellular MT orientation, cell shape, and organ morphology. Because IQDs share biochemical properties with scaffold proteins, the authors propose that the IQD family provides an assortment of platform proteins for integrating CaM-dependent Ca2+ signaling at multiple cellular sites to regulate cell function, shape, and growth.

A Salivary Effector Aids in Brown Planthopper Feeding on Rice Plants

Herbivory-induced plant cell wall modifications play an important role in deterring herbivory. Modified cell walls not only act as physical defenses against herbivores by enhancing the mechanical hardness of plant tissues but also reduce the digestibility of food for herbivores, thereby functioning as the first layer of defense against herbivores. In response, herbivores have evolved the capacity to suppress and circumvent these plant defenses through the release of effectors. Herbivores can secrete salivary plant cell wall-degrading enzymes such as cellulases (consisting of endo-β-1, 4-glucanases and β-glucosidases) and pectinases to degrade plant cell walls.

The brown planthopper Nilaparvata lugens is a major insect pest of rice (Oryza sativa) in Asia. After landing on plants, the brown planthopper feeds by sucking the phloem sap. Ji et al. (Plant Physiol. 173: 1920–1932) have discovered a salivary endo-β-1,4-glucanase (NlEG1) that is secreted into rice plants by brown planthoppers. Silencing NlEG1 reduces the food intake, mass, survival, and fecundity of brown planthoppers feeding on rice plants. By contrast, NlEG1 silencing had only a small effect on the survival rate of brown planthoppers raised on an artificial diet. Moreover, NlEG1 secreted by brown planthoppers did not elicit the production of the defense-related signal molecules salicylic acid, jasmonic acid, and jasmonoyl-Ile in rice. The authors suggest that NlEG1 enables the brown planthopper’s stylet to reach the phloem by degrading the cell wall defenses induced in rice plants in response to herbivory.

Upcoming Plant Physiology Focus Issues

Focus Issue on Cellular Dynamics (January 2018)

Editors: Dan Szymanski, Diane Bassham, Teun Munnik, and Wataru Sakamoto
Submission Deadline: June 5, 2017

To be published in January 2018, this focus issue will provide a series of invited Update Reviews on hot topics in plant cell biology, with broad coverage of the major plant organelles and cytoskeletal systems and research articles on dynamic processes of plant cells. The issue will highlight new research that uncovers mechanistic details of the dynamic function of plant cells. Studies that include multivariate live cell imaging, computational modeling of cells, tissues, and organs, or technology development centered on imaging are particularly encouraged.

Focus Issue on Energy: Light and Oxygen Dynamics (February 2018)

Editors: Ronald Pierik, Julia Bailey-Serres, Alexander Ruban, and Astrid Wingler
Submission Deadline: August 1, 2017

This Focus Issue will consider topics ranging from cellular processes to developmental decisions, in the context of the organism and its interactions with a dynamic and challenging environment. Contributions might include mechanistic studies on light perception and signal transduction, energy sensing and metabolism, as well as low oxygen cues and responses. Submissions within this broad theme that advance mechanistic knowledge to improve crops are welcomed.

 

Update: Understanding and Manipulating Meiotic Recombination in Plants

Abstract

Meiosis is a specialized cell division, essential in most reproducing organisms to halve the number of chromosomes, thereby enabling the restoration of ploidy levels during fertilization. A key step of meiosis is homologous recombination, which promotes homologous pairing and generates crossovers (COs) to connect homologous chromosomes until their separation at anaphase I. These CO sites, seen cytologically as chiasmata, represent a reciprocal exchange of genetic information between two homologous nonsister chromatids. This gene reshuffling during meiosis has a significant influence on evolution and also plays an essential role in plant breeding, because a successful breeding program depends on the ability to bring the desired combinations of alleles on chromosomes. However, the number and distribution of COs during meiosis is highly constrained. There is at least one CO per chromosome pair to ensure accurate segregation of homologs, but in most organisms, the CO number rarely exceeds three regardless of chromosome size. Moreover, their positions are not random on chromosomes but exhibit regional preference. Thus, genes in recombination-poor regions tend to be inherited together, hindering the generation of novel allelic combinations that could be exploited by breeding programs. Recently, much progress has been made in understanding meiotic recombination. In particular, many genes involved in the process in Arabidopsis (Arabidopsis thaliana) have been identified and analyzed. With the coming challenges of food security and climate change, and our enhanced knowledge of how COs are formed, the interest and needs in manipulating CO formation are greater than ever before. In this review, we focus on advances in understanding meiotic recombination and then summarize the attempts to manipulate CO formation. Last, we pay special attention to the meiotic recombination in polyploidy, which is a common genomic feature for many crop plants.

Read more….

Lambing, C., Franklin, F.C.H. and Wang, C.-J.R. (2017). Understanding and Manipulating Meiotic Recombination in Plants. Plant Physiology. 173: 1530-1542.

Heteroblastic Development of Transfer Cells: A Role for MicroRNA

Transfer cells (TCs) play critical roles in membrane transport of solutes at various sites within plants and between plants and their environment. This transport capacity is conferred by inward wall protuberances that extend into the cell lumen. These ingrowths function to enhance the area of surrounding plasma membrane, therefore increasing surface-to-volume ratio of the TC and consequently promoting the transmembrane flux of solutes. Across the plant kingdom, the occurrence of TCs is proposed to be an indicator of anatomical locations where intensive transport occurs. In Arabidopsis (Arabidopsis thaliana), phloem parenchyma (PP) cells in the minor vein network of leaves and sepals can develop wall ingrowths to become PP TCs. Wall ingrowths in these PP TCs are typically bulky and predominantly abut sieve elements and to a lesser extent companion cells. PP TCs have been assumed to facilitate the efflux of photoassimilates. Nguyen et al. (Plant Physiol. 173: 1676–1691) now report that wall ingrowth deposition in PP TCs in leaf veins of Arabidopsis represents a novel trait of heteroblasty. PP TCs with extensive wall ingrowths are ubiquitous in mature cotyledons and juvenile leaves, but dramatically less so in mature adult leaves, an observation consistent with PP TC development reflecting vegetative phase change in Arabidopsis. Consistent with this conclusion, the abundance of PP TCs with extensive wall ingrowths varied across rosette development in three ecotypes displaying differing durations of juvenility. PP TC development across juvenile, transition, and adult leaves correlated positively with levels of miR156, a major regulator of the vegetative phase change in plants.

Early evolution of the land plant circadian clock

Clocks in green algae have been described as simple two-gene loops, while clocks in angiosperms have evolved to complex interlocked loops. This striking jump in complexity led Linde et al. to investigate the clocks in bryophytes and charophytes to shed light on this transition. First, through the sequence analysis of bryophyte’s and charophyte’s available genomes, the authors identified several homologues to the Arabidopsis clock genes, with some differences in copy number (duplication and loss) and presence. Then, they characterized the rhythmicity and functionality of such genes in mutants of the liverwort Marchantia polymorpha, as well as expression patterns in the former and the hornwort Anthoceros agrestis. Although we still don’t know what processes these clock genes control in bryophytes and charophytes, the results suggest an early occurrence of a complex circadian network that was present before or concurrent with the colonization of land by plants. (Summary by Gaby Auge) New Phytol. doi: 10.1111/nph.14487

High levels of antioxidants correlate with leaf growth in drought tolerant maize

Drought tolerance is a complex trait, and Avramova et al. show that there is more than one way to be drought tolerant. Specifically, they investigate the role of antioxidants in supporting leaf growth in several varieties of drought tolerant maize. As compared to the tolerant lines, drought sensitive varieties accumulate more reactive oxygen species, including H2O2 and malondialdehyde (MDA: a marker for lipid peroxidation) in the leaf growth zone. Interestingly though, in some of the lines (specifically, those obtained from Egypt) drought tolerance was correlated with elevated levels of antioxidant metabolites, whereas in the other lines (from Europe and South Africa) drought tolerance was correlated with elevated activities of antioxidant enzymes. These results demonstrate that drought tolerance is associated with preventing the accumulation of reactive oxygen species, but that there is more than one way to achieve it. Frontiers Plant Sci. 10.3389/fpls.2017.00084

Photosynthetic trichomes contain a specific Rubisco with a modified pH-dependent activity

Rubisco (Ribulose-1,5-biphosphate carboxylase/oxygenase) is the key enzyme in photosynthetic carbon fixation. In C3 plants, the enzyme is usually found in mesophyll cells and guard cells, but it also can be found in photosynthetic glandular trichomes such as those found in tobacco. Laterre et al. used comparative proteomics to identify proteins specifically expressed in glandular trichomes. One of those they identified is a Rubisco small subunit protein, NtRbcS-T, which clusters with a distinct subset of RbcS subunits identified from other plants with secretory trichomes. Rubisco complexes incorporating the trichome subunits also show biochemical differences, including altered kinetics and pH dependency. The authors propose that this enzyme may be optimized for the distinctive cellular environment of glandular trichomes arising from the production of specialized metabolites. Plant Physiol. 10.​1104/​pp.​17.​00062

OsFTIP1 is required for transport of rice flowering signal (florigen)

Flowering at the right time of year is crucial for plant reproductive success, so in many plants the transition to reproductive growth is sensitive to daylength.  In recent years, the daylength-responsive signal that moves from leaves to the shoot apical meristem, florigen (encoded by FLOWERING LOCUS T (FT) in Arabidopsis), has been identified, but questions about its transport remain. Song et al. used CRISPR/Cas to mutagenize OsFTIP1, the rice orthologue of FT-INTERACTING PROTEIN 1, demonstrating its requirement for the movement of RICE FLOWERING LOCUS T (RFT) from companion cells to sieve elements and subsequent transport to the shoot apical meristem. The authors also show that the abundance of OsFTIP1 in leaves is regulated by proteolysis. Plant Cell 10.​1105/​tpc.​16.​00728