Review: Chloroplast function revealed through analysis of GreenCut2 genes

Of the 3000 or so proteins housed in the chloroplast, we know the functions of only a few hundred. One approach to identify function is to first identify plastid proteins found exclusively in photosynthetic organisms. This subset, GreenCut2, is further subdivided by whether the proteins are found in red algae, diatoms, and/or green plants. Fristedt describes further characterization of this set of proteins through literature and database reviews, which led to the sub-categorization of these proteins by their subcellular localization, as well as phylogenetic studies using CLIME (Clustering by inferred models of evolution), which together shed light onto the functions of some of these important but poorly understood proteins.   J. Exp. Bot. 10.1093/jxb/erx082

Review: Mechanisms to mitigate the tradeoff between growth and defense ($)

It is widely recognized that defense incurs a cost in terms of reduced growth. Karasov et al. explore the nature of this tradeoff. They observe that rather than tradeoff being driven directly by metabolic competition, it appears to occur upstream through regulatory processes including antagonism between hormones. They describe situations in which the availability of nutrients or competition shifts the balance between growth and defense, and also forms of defense regulation that can minimize the negative impact on growth, including priming and transgenerational defense induction and the fine regulation of R gene expression. Finally, they discuss the role of other organisms including beneficial insects and the microbiome in low-cost defense strategies. They conclude by stressing the need for more field studies to explore growth-defense tradeoffs in “in a range of conditions, and in environments with other species.” Plant Cell 10.​1105/​tpc.​16.​00931

Review: Wheat genomics comes of age

Due to its highly repetitive, polyploid genome, wheat genomics has lagged behind that of other cereals, but new tools promise to begin closing that gap.  Uauy reviews these new tools, which include access to full genomes of several wheat varieties, gene expression data from hundreds of publicly available RNA-sequencing datasets, next-generation sequencing enabled trait mapping, and genome editing approaches. He concludes with a call to action: “It is essential that we train the next generation of genomics-enabled crop researchers and breeders. This does not necessarily imply that a single individual be able to move seamlessly from the field to the computer; but rather that they be able to communicate effectively between disciplines and appreciate the potential of genomics and field-based research to complement each other.” Curr. Opin. Plant Biol. 10.1016/j.pbi.2017.01.007

Update: Origins and evolution of stomatal development

The fossil record suggests stomata-like pores were present on the surfaces of land plants over 400 million years ago. Whether stomata arose once or whether they arose independently across newly evolving land plant lineages has long been a matter of debate. In Arabidopsis, a genetic toolbox has been identified which tightly controls stomatal development and patterning. This includes the bHLH transcription factors SPEECHLESS, MUTE, FAMA and ICE/SCREAMs (SCRMs) which promote stomatal formation. These factors are regulated via a signalling cascade which includes mobile EPIDERMAL PATTERNING FACTOR (EPF) peptides to enforce stomatal spacing. Mosses and hornworts, the most ancient extant lineages to possess stomata, possess orthologues of these Arabidopsis stomatal toolbox genes and manipulation in the model bryophyte Physcomitrella patens has shown that the bHLH and EPF components are also required for moss stomatal development and patterning. This supports an ancient and tightly conserved genetic origin of stomata. Here, we review recent discoveries and, by interrogating newly available plant genomes, we advance the story of stomatal development and patterning across land plant evolution. Furthermore, we identify potential orthologues of the key toolbox genes in a hornwort, further supporting a single ancient genetic origin of stomata in the  ancestor to all stomatous land plants.

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Experiments on Plant Hybrids by Gregor Mendel (new English translation)

Scott Abbott and Daniel J. Fairbanks

Andrew Groover (UC Davis)

Andrew Groover is a scientist with the US Forest Service in Davis California and holds a faculty position at UC Davis.

He was recently profiled in New Phytologist.

What inspired your interest in plant science?

I grew up spending much of my time exploring the woods by the Chattahoochee River near my parents’ house in Atlanta (Georgia, USA) and I developed an early appreciation for forests. At the same time, I was an insatiable reader and popular science writers such as Carl Sagan fired my imagination. I combined my interests in forests and science when I went to The University of Georgia and studied forest science. During that time I attended an excellent class on plant developmental biology by Russell Malmberg, and a lecture by a visiting scientist, Elliot Meyerowitz, on plant developmental genetics that inspired me to develop a career focusing on the developmental biology of forest trees.

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Signatures of local adaptation in lowland and highland teosintes from whole genome sequencing of pooled samples ($)

Teosinte, the ancestor of maize, grows in a range of environments in México. Teosinte parviglumis (Zea mays ssp parviglumis) is more prevalent in lowland regions while teosinte mexicana (Zea mays ssp mexicana) occupies highland territory (>2000 m above sea level). Admixture between parviglumis and mexicana can occur at mid-elevations. Fustier et al. sampled an altitudinal gradient of teosinte populations and then used pooled sequencing populations of low, mid and high elevations. The authors used two population differentiation methods and correlations of allele frequencies with environmental variables to find outlier SNPs that tended to cluster together and 47 candidate regions were identified. The authors were able to recover a previously characterized inversion in chromosome 1. A soft sweep was found in a locus involved in leaf macrohair variation, a phenotype that is characteristic of teosinte mexicana and that is absent in lowland teosinte parviglumis. Finally, several outlier SNPs tthat colocalized with loci involved in root system architecture, heavy metal tolerance and nutrient deficiencies point to a significant role of soil physico-chemical properties as major drivers of teosinte local adaptation. (Summary by Rubén Rellán-Álverez group) Mol. Ecol. 10.1111/mec.14082

Aflatoxin-free transgenic maize using host-induced gene silencing

Aflatoxins are toxic metabolites produced by some species of Aspergillus fungi that can occur on numerous crop plants. When ingested by animals, aflatoxins cause health problems including liver cancer and stunted growth. Thakare et al. used host-induced gene silencing (HIGS) to block aflatoxin production in maize. They introduced into maize a kernel-specific RNAi construct specific for a gene aflc encoding a key enzyme in alfatoxin biosynthesis. When the resulting plants were inoculated with Aspergillus, no aflatoxin was detectable and no other differences between the engineered and control plants were observable. The authors emphasize that the success of this effort was due to their efforts to identify regions of the aflc gene with no sequence homology to the maize genome. Science 10.1126/sciadv.1602382  

Divergent evolution driven by pollinators

A great variety of plants rely on pollinators to be fertilized successfully. This close relationship is thought to drive evolutionary diversification in plants, making the presence or absence of pollinators in response to climate change an increasingly relevant matter. Gervasi and Schiestl addressed the question of how pollinators influence real-time evolution of adaptive traits in plants with a simple and elegant set of experiments. Starting with a single batch of Brassica rapa plants (self-incompatible), the authors let the plants be pollinized by bumblebees or hoverflies, or manually fertilized them, for nine consecutive generations. The authors found differences in petal traits and floral volatiles associated with the type of pollinator (or not) that visited the plants, and that the evolution of the adaptive traits subsequently affected  which pollinators visited the plants. In this way, the authors showed that diversification in plants can be driven by pollinators in just a few generations. (Summary by Gaby Auge) Nature Comms.  10.1038/ncomms14691