Antagonistic regulation of the gibberellic acid response during stem growth in rice (Nature)
Plant Science Research WeeklyStem growth determines the final height of graminaceous plants and greatly influences productivity in cultivated species (e.g., short internodes in semi-dwarf rice varieties to increase lodging resistance) and adaptation in wild species (e.g., elongated internodes in tall deepwater rice to help survive…
Dynamic regulation of Pep-induced immunity through post-translational control of defense transcript splicing (Nature Plants)
Plant Science Research WeeklyIn plant immunity, signal transduction is tightly modulated through mechanisms including controlled stoichiometry of key regulators. Dressano et al. identified the novel IMMUNOREGULATORY RNA-BINDING PROTEIN (IRR) as a negative regulator of immunity in both maize and Arabidopsis through a screen of Plant…
The Apple miR171i and its target SCL26.1 enhance drought tolerance (Plant Physiol.)
Plant Science Research WeeklyDrought is one of the most important abiotic factors affecting plant growth and development. MicroRNAs are a class of small nuclear RNAs (snRNAs) consisting of 21-24 nucleotides, that play critical roles in many biological processes by regulating target gene expression. Apple is one of the most economically…
Driving factors of disease spread in natural plant-pollinator communities (Nature Ecol. Evol.)
Plant Science Research WeeklyDisease spread within species-rich communities is hard to predict and prevent due to the dynamic transmission of parasites between multiple hosts that change in abundance and composition over time. To better understand the temporal dynamics of bee parasites in communities of plants and pollinators, Graystock…
Alpine plant growth and reproduction dynamics in a warmer world (New Phytol.)
Plant Science Research WeeklyClimate warming affects plant performance in warm and dry regions. In cold regions, warming stimulates growth and reproduction, but its effects can vary depending on location and species. Whether herbaceous plants can adapt to increasing temperatures is unclear and a matter of concern. In this study…
Plant Science Research Weekly: August 7, 2020
WWR Full PostReview: Potential applications of plant biotechnology against SARS-CoV-2
For those of you about to start teaching again, here’s a great article to share with your plant science students, showcasing the ways that plant biologists are contributing to the international efforts to develop diagnostic…
Small but powerful: miRNA-derived peptides promote grape adventitious root formation
Blog, Plant Physiology, Plant Physiology: News and Views, ResearchMagdalena Julkowska, King Abdullah University of Science and Technology
[email protected]
ORCID: 0000-0002-4259-8296
Although plant genomes typically contain hundreds of miRNA encoding genes, we know little about how miRNA expression is regulated (Wang et al., 2019). The expression…
Peptide-Receptor Signaling Pumps the Brakes on Auxin Biosynthesis and Ethylene Signaling to Harmonize Root Growth and Nodulation
Blog, Research, The Plant Cell, The Plant Cell: In BriefNitrogen (N) is the most abundant element in Earth’s atmosphere. However, plants must capture this essential element from soil through their roots. To do this, legume roots forge symbioses with rhizobia to initiate nodule development. Root nodules provide rhizobia an environment suitable for converting…
Extreme Engineering: How Antarctic Algae Adapt to Hypersalinity
Blog, Plant Physiology, Plant Physiology: News and Views, ResearchMagdalena Julkowska, King Abdullah University of Science and Technology
[email protected]
ORCID: 0000-0002-4259-8296
Photosynthetic organisms can be found across most environments on Earth, including the most extreme ones. The McMurdo Valleys in Antarctica are among the driest…
The Multifaceted Roles of Autophagy in Fixed-carbon Starvation
Blog, Research, The Plant Cell, The Plant Cell: In a NutshellMcLoughlin et al. uncover the critical roles of autophagy in recycling amino acids and nitrogen-rich nucleotides, adjusting respiratory substrates, and the retention of assimilated nitrogen in maize during fixed-carbon starvation. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00226
Background:…
A new order through disorder: intrinsically disordered proteins reshape the cytoskeleton under drought stress
Blog, Plant Physiology, Plant Physiology: News and Views, ResearchMany proteins have a clearly defined structure-function relationship – specific three-dimensional folds can be linked to specific protein functions. We do however know that many proteins – referred to as intrinsically disordered proteins (IDPs) – lack rigid three-dimensional organisation. In recent…
Recognizing Plant Physiology authors: Maitree Pradhan
Plant Physiology, Plant Physiology: Author ProfilesMaitree Pradhan, first author of Argonaute 4 modulates resistance to Fusarium brachygibbosum infection by regulating jasmonic acid signaling
Current Position: Post-doctoral fellow at Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
Education: PhD (Natural…
Recognizing Plant Cell authors: Rui Zhang
The Plant Cell, The Plant Cell: Author ProfilesRui Zhang, first author of Identification of the Key Regulatory Genes Involved in Elaborate Petal Development and Specialized Character Formation in Nigella damascena (Ranunculaceae)
Current Position: Assistant Professor, State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany,…
Recognizing Plant Direct authors: Alexandra Jammer
Plant Direct, Plant Direct: Author ProfilesAlexandra Jammer, first author of Early-stage sugar beet taproot development is characterised by three distinct physiological phases
Current Position: I currently have two academic part-time jobs, working 75 % as a Lecturer at the University of Graz (Austria), and 25 % as a Postdoc researcher in a project…
Recognizing Plant Cell authors: Emily R. Larson
The Plant Cell, The Plant Cell: Author ProfilesEmily R. Larson, co-first author of Synergy among exocyst and SNARE interactions identifies a functional hierarchy in secretion during vegetative growth
Current Position: Senior research associate, School of Life Sciences, University of Bristol
Education: PhD: University of Vermont, Burlington VT…
Recognizing Plant Cell authors: Jitka Ortmannová
The Plant Cell, The Plant Cell: Author ProfilesJitka Ortmannová, co-first author of Synergy among exocyst and SNARE interactions identifies a functional hierarchy in secretion during vegetative growth
Current Position: Postdoctoral researcher at the Swedish University of Agricultural Sciences
Education: PhD: Dept of Experimental Plant Biology,…
Recognizing Plant Physiology authors: Kai Wang
Plant Physiology, Plant Physiology: Author ProfilesKai Wang, first author of The CDK inhibitor SIAMESE targets both CDKA;1 and CDKB1 complexes to establish endoreplication in trichomes
Current Position: Looking for a postdoctoral position
Education: B. Sc. in Biological Sciences from Northwest A & F University, Yangling, China; M.Sc. in Biochemistry…
Recognizing Plant Direct authors: Marianne C. Kramer
Plant Direct, Plant Direct: Author ProfilesMarianne C. Kramer, first author of N6-methyladenosine and RNA secondary structure affect transcript stability and protein abundance during systemic salt stress in Arabidopsis
Current Position: PhD Candidate in Cell and Molecular Biology in the Perelman School of Medicine at the University of Pennsylvania
Education: B.S.…
Recognizing Plant Cell authors: Michael Greer
The Plant Cell, The Plant Cell: Author ProfilesMichael Greer, first author of SEIPIN isoforms interact with the membrane-tethering protein VAP27-1 for lipid droplet formation
Current Position: Senior Director of Operations at Willow Biosciences Inc. www.willowbio.com
Education: BSc. Biochemistry (Honors.) - University of Lethbridge 2006; MSc.…
Recognizing Plant Physiology authors: Rodrigo Gomez
Plant Physiology, Plant Physiology: Author ProfilesRodrigo Gomez, first author of Plastidic Δ6 Fatty-Acid Desaturases with Distinctive Substrate Specificity Regulat the Pool of C18-PUFAS in the Ancestral Picoalga Osteococcus Tauri
Current Position: PhD Student, Autophagy Team, LBM (Membrane Biogenesis Lab) UMR 5200 CNRS – University of Bordeaux
Education:…
Recognizing Plant Direct authors: Andries Temme
Plant Direct, Plant Direct: Author ProfilesAndries Temme, first author of Element content and distribution has limited, tolerance metric dependent, impact on salinity tolerance in cultivated sunflower (Helianthus annuus)
Current Position: Assistant Research Scientist, Department of Plant Biology, University of Georgia, USA
Education: BSc…
Recognizing Plant Physiology authors: Ashley E. Cannon
Plant Physiology, Plant Physiology: Author ProfilesAshley E. Cannon, first author of Seedling chloroplast responses induced by N-linolenoylethanolamine require intact G-protein complexes
Current Position: Research Molecular Biologist, Wheat Health, Genetics, and Quality Research Unit, USDA-ARS, Pullman, WA
Education: B.S. in Chemistry from Midwestern…
Recognizing Plant Cell authors: Changzhen Liu
The Plant Cell, The Plant Cell: Author ProfilesChangzhen Liu, first author of Oryza sativa RNA-dependent RNA Polymerase 6 Contributes to Double-strand Break Formation in Meiosis
Current position: PhD Candidate of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
Education: MSc in Developmental Biology…
Among-population variation in seed mass for 190 Tibetan plant species: Phylogenetic pattern and ecological correlates (Glob. Ecol. Conserv.)
Plant Science Research WeeklySeed mass is a central trait in plant life history that impacts on seed production, germination, and establishment. Several studies have documented the variation in seed mass between species, but little is known about its variation among populations of the same species. In this paper, Zhang et al. tested…
Phylogenetic relatedness mediates persistence and density of soil seed banks ($) (J. Ecol.)
Plant Science Research WeeklySoil seed banks are classified into two types, depending on how long seeds remain viable in the soil before germination or decay: transient (< 1 year) or persistent (> 1 year). In turn, a species' ability to form a persistent seed bank presumably depends on seed traits and plant habitat. However,…
Cones structure and seed traits of four species of large‐seeded pines: Adaptation to animal‐mediated dispersal (Ecol. Evol.)
Plant Science Research WeeklyDifferent studies show that animal-dispersed pines have particular cone and seed structures to match their dispersers. However, most research has either addressed the changes in cone and seed traits in a single species over an environmental gradient or the differences between wind-dispersed and animal-dispersed…
On the origin of giant seeds: the macroevolution of the double coconut (Lodoicea maldivica) and its relatives (Borasseae, Arecaceae) (New Phytol.)
Plant Science Research WeeklyThe double coconut –Lodoicea maldivica (J.F.Gmel.) Pers. (Arecaceae: Coryophoideae)– is an endemic palm from Seychelles with the largest seed in the world: 0.5 m length and 25 Kg weight. Several hypotheses have been proposed to explain the origin of this enormous seed, but they have not been formally…
Review: Seed Mucilage Evolution: Diverse Molecular Mechanisms Generate Versatile Ecological Functions for Particular Environments ($) (Plant Cell Environ.)
Plant Science Research WeeklyPlants with myxodiaspory release mucilage upon imbibition of seeds (myxospermy, e.g., Arabidopsis thaliana) or fruits (myxocarpy, e.g., Linum usitatissimum). This ability appears in several angiosperm families, but its evolutionary origin has seldom been studied. In this review, Viudes et al. synthesize our…
Phylogenetic analyses of key developmental genes provide insight into the complex evolution of seeds ($) (Mol. Phylogenet. Evol.)
Plant Science Research WeeklyThe complex genetic network behind the development of the ovule –the cell that will give place to seeds after fertilization– has been widely described in some model plants. However, ovules hold a high variability in integument number and morphology across seed plants. To understand the genetic mechanism…
Parallel Seed Color Adaptation during Multiple Domestication Attempts of an Ancient New World Grain ($) (Mol. Biol. Evol.)
Plant Science Research WeeklyAmaranth has been cultivated in Central and South America since Pre-Columbian times. Still, it exhibits features that are unexpected in domesticated plants, such as seed shattering and reduced seed size. Here, Setter et al. dissected the genetic signature of this crop’s domestication process, with…
Plant Science Research Weekly: July 31
WWR Full PostSeed Evolution Special Issue
This week "Plant Science Research Weekly," focuses on the evolution of seeds and includes a selection of recent papers that use varying approaches to increase our understanding of the origin and changes of different seed features. Since seeds are transversal to multiple…
Correcting organellar spelling with RNA editors
Research, The Plant Cell, The Plant Cell: In a NutshellOldenkott et al. use evolution to their advantage by testing whether independently evolved RNA editors can reciprocally correct the errors of organellar transcripts. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00311.
By Bastian Oldenkott and Mareike Schallenberg-Rüdinger, IZMB, University…
Easy PDF submission at The Plant Cell
The Plant Cell, The Plant Cell: NewsYES, you can submit a single PDF of your manuscript with your figures (and supplemental data) to The Plant Cell at first submission! We’ve realized that authors may not be aware of this, although it has been possible for some years.
During submission you will notice that there are only two files…
Pollen tubes use matrix rigidity to direct growth
Plant Physiology, Plant Physiology: News and Views, ResearchEmily R Larson
[email protected]
School of Biological Science, University of Bristol, Bristol, UK
ORCID: 0000-0002-5498-8152
Pollen tube growth through plant pistil tissues requires interactions between the male and female cells to regulate compatibility (McCormick, 1998), and hormonal…
Call for Papers: The Plant Cell Focus Issue on Cell Biology
Blog, Pubs Pages, The Plant Cell: News
Plants have been a source of fundamental discoveries on the nature, organization, and function of cells, from the first description of cells to the dissection of the secretory system, and from insights into the role of the cytoskeleton and cell wall in morphogenesis to the discovery…
Plants (RNA) Editors: Testing for Conservation in RNA Editing in moss and angiosperms
Research, The Plant Cell: In BriefWhen I was a kid, I remember keeping a bottle of wite-out with my pens for the inevitable spelling mistake. Now, in the digital age, I either let my word processor autocorrect spelling errors or wait for the red squiggly line under suspicious words.
On any given day, a single (plant) cell by far out-writes…
Functional analysis of mitochondrial acyl carrier proteins
Plant Physiology, Plant Physiology: News and Views, ResearchAnanya Mukherjee
[email protected]
Affiliation University of Nebraska, Lincoln, Nebraska 68588
ORCiD : 0000-0003-1802-1806
Fatty acid synthesis is a ubiquitous pathway in both prokaryotes and eukaryotes. Plants synthesize fatty acids for a variety of uses including membrane bilayers and…
Teaching the next generation of plant scientists using the creative Plant Teaching Tools
Blog, Pubs Pages Contributed by Wei He, an Associate Professor in Northwest University, Xian, China.ORCID iD: 0000-0003-1236-3047.
You can read this post in Chinese here.
I started teaching “Advance Plant Physiology and Biochemistry” for postgraduate students in Northwest University in China in 2013. In preparation…
培养下一代的植物学家——创新性的教学工具the Plant Teaching Tools
Blog, Pubs PagesContributed by Wei He, an Associate Professor in Northwest University, Xian, China.ORCID iD: 0000-0003-1236-3047.
You can read this post in English here.
自2013年起,我开始承担西北大学高级植物生理生化课程的教学工作。在课程筹备之时,我偶然在网上发现了由The…
Oxford University Press to publish American Society of Plant Biologists journals
Blog, Pubs Pages
Frequently Asked Questions Regarding the American Society of Plant Biologists’ Partnership with Oxford University Press
The American Society of Plant Biologists (ASPB) is delighted to announce that it will partner with Oxford University Press (OUP) to produce and disseminate the ASPB journals…
REVIEW: Shared Structural Principles Across Kingdoms ($) (Annu. Rev. Cell Dev. Biol)
Plant Science Research Weekly
Understanding how a single fertilized cell develops into a complex multicellular system has always been a challenging but fascinating topic of developmental biology. In both animal and plant species, it all starts with a simple spherical cell; afterward, two axes of polarity generate flat shapes,…
REVIEW: Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding (Heredity)
Plant Science Research Weekly
Biparental populations (BPPs) obtained by crossing two diverse inbred lines have long been used for dissecting the complex traits owing to their simplicity, ease of development and high power of detecting QTLs with a few hundred markers genotyped. Nonetheless, poor resolution and low genetic diversity…
Cold, but not freezing: the ICE-L genome ($) (Current Biology)
Plant Science Research Weekly
When sea water freezes, it forms not a solid mass of ice, but rather a frozen matrix criss-crossed by tiny brine-filled channels. It is within these brine channels in the Antarctic sea ice that the psychrophilic (cold-loving) green alga ICE-L lives. How is it able to thrive in such a seemingly hostile…
Temperature-dependent growth contributes to long-term cold sensing ($) (Nature)
Plant Science Research Weekly
Seasonal changes in ambient temperature greatly influence plant development. While the response to acute heat stress has been widely studied, the regulatory mechanisms that integrate naturally fluctuating temperatures – such as the progression of winter - remain largely unknown. This paper sheds…
Rubisco accumulation factor 1 and carboxysome biogenesis (PNAS)
Plant Science Research Weekly
Carbon concentration mechanisms (CCMs) refer to a diverse set of strategies by which photosynthetic organisms increase the amount of carbon dioxide available to the carbon-fixing enzyme Rubisco. The cyanobacterial CCM relies on the carboxysome, a membraneless microcompartment with a core of densely…
A new miRNA complex assembly partner – Intrinsically disordered but an important scaffold ($) (Plant Physiol)
Plant Science Research Weekly
Gene regulation through microRNAs (miRNA) starts in the nucleus with transcription and processing into mature miRNA duplexes. Loading of miRNA into ARGONAUTE1 (AGO1) and the assembly of the RNA-Induced Silencing Complex was thought to be exclusively a cytoplasmic process, but new research reports…
Epicotyl morphophysiological dormancy and storage behaviour of seeds of Strychnos ($) (Seed Sci. Res.)
Plant Science Research Weekly
Seed dormancy and desiccation tolerance impact on germination timing and soil seed bank formation. Here, Muthuthanthirige et al. conducted a thorough series of experiments and anatomical observations to determine the dormancy class and desiccation tolerance of three Strychnos (Loganiacae) species:…
Ancient seeds reconstruction and the evolution of integuments (New Phytologist)
Plant Science Research Weekly
The origin of seeds - the specialized structures that contain and protect the developing embryos- is a key event in plant evolution. Primitive seeds comprise an exposed nucellus surrounded by a lobate integument; in contrast, extant seeds have one or more integuments fully enclosing the nucellus.…
Cell fate switch in response to impaired ribosome biogenesis ($) (Plant Cell)
Plant Science Research Weekly
Root hairs are epidermal projections that help plants to absorb water and nutrients from the soil. Root hair development is initiated by the cumulative action of TRANSPARENT TESTA GLABRA1 (TTG1, a WD40 domain protein), GLABRA3/ENHANCER OF GLABRA3 (GL3/EGL3, a bHLH), CAPRICE (CPC, a MYB), inhibited…
Plant Science Research Weekly: July 24
WWR Full PostGuest Editor:
Humberto Herrera-Ubaldo
Humberto is a postdoctoral Fellow at the de Folter Lab, in CINVESTAV-Irapuato (Mexico). He holds a PhD in Plant Biotechnology. During his career, he has focussed on the study of transcription factors guiding gynoecium and fruit development in Arabidopsis.…
Trafficking of VHA-a isoforms in Arabidopsis thaliana (bioRxiv)
Plant Science Research Weekly
Vacuolar-type ATPase (V-ATPase) is a highly conserved enzyme but functionally diverse among eukaryotic cells. V-ATPases couple the energy released by ATP hydrolysis to pump protons across membranes of many cell types. In Arabidopsis, the V-ATPases containing different isoforms of V-ATPase catalytic…
NLR-Annotator: a tool for de novo annotation of intracellular immune receptor repertoire
Plant Physiology, Plant Physiology: News and Views, ResearchWei Zhang
ORCID: 0000-0002-5092-643X
Department of Plant Pathology, Kansas State University, 1712 Claflin Road, Throckmorton Hall, Manhattan, KS, 66506, USA
[email protected]
Nucleotide-binding domain leucine-rich repeat (NLR) proteins serve as intracellular immune receptors in plants to…
Which Factors Control Starch Granule Initiation?
Research, The Plant Cell, The Plant Cell: In BriefStorage and remobilization of sugar molecules play important roles for the growth and survival of living organisms. Besides a few exceptions, animals store carbohydrates in the form of soluble glycogen while green plants and algae bank glucans as insoluble starch. Starch forms the basis of human nutrition…
Too Active in ER Fusion? Here Comes LUNAPARK to the Rescue
Research, The Plant Cell, The Plant Cell: In a NutshellSun et al. found that Arabidopsis LUNAPARK, a protein evolutionarily conserved in eukaryotes, is an E3 ligase that promotes the degradation of ROOT HAIR DEFECTIVE3, an ER fusogen. Plant Cell https://doi.org/10.1105/tpc. 18.00937
By Jiaqi Sun, Hugo Zheng, Department of Biology, McGill University, 1205…
Plant Direct Q&A with Judy Brusslan
Plant Direct: Author ProfilesWhat does your lab work on?
My lab is interested in the regulation of leaf senescence (LS). As leaves sequentially age, they enter a regulated dismantling process that exports nutrients to growing and storage organs.
Tell us about the key findings from your recent article in Plant Direct.
We…
Comparative profiling examines roles of DNA regulatory sequences and accessible chromatin during cold stress response in grasses
Research, The Plant Cell, The Plant Cell: In BriefPhysical access to regulatory DNA, including cis-regulatory sequences found within proximal promoters and distal enhancer elements, is a vital property of chromatin. In turn, their access is determined by nucleosome occupancy and post-translational modification of histone proteins. A continuum of chromatin…
Mix, Match, and Maize: A Synthetic System for Maize Nuclear Auxin Response Circuits
Plant Physiology, Plant Physiology: News and Views, ResearchDhineshkumar Thiruppathi 1,2
ORCID ID: 0000-0002-2018-3356
Donald Danforth Plant Science Center,
Saint Louis, Missouri 63132
1Lead author
2Author for contact: [email protected]
The phytohormone auxin plays a major part in nearly every plant process, including growth…
Starting Off Right: N-terminal Acetylation Stabilizes an Immune-activating Protein
Plant Physiology, Plant Physiology: News and Views, ResearchCharles Copeland1
[email protected]
1Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany
Plants rely on a complex innate immune system to recognize and respond to potential pathogens in their environment (Jones and Dangl, 2006).…
Identifying and annotating mRNA transcripts from non-genic regions of the genome
Research, The Plant Cell, The Plant Cell: In a NutshellPanda et al. use third-generation sequencing to examine the transcriptome of genomic regions that do not encode genes. Plant Cell https://doi.org/10.1105/tpc.20.00115
By Kaushik Panda – Donald Danforth Plant Science Center, and R Keith Slotkin – Donald Danforth Plant Science Center and University…
Close Encounters of the ARF Kind: Proximity-based ARF1 GTPase Activity Regulates Vesicle Trafficking
Research, The Plant Cell, The Plant Cell: In BriefADP-RIBOSYLATION FACTOR (ARF) proteins play essential roles in vesicle trafficking by regulating the formation of membrane vesicles that move cargo throughout the cell. Their activity is controlled by specific guanine exchange factors (ARF-GEFs) that activate ARFs by catalyzing a GDP to GTP exchange…
Recognizing Plant Cell authors: Vivek K. Raxwal
The Plant Cell, The Plant Cell: Author ProfilesVivek K. Raxwal, first author of Nonsense mediated RNA decay factor UPF1 is critical for post-transcriptional and translational gene regulation in Arabidopsis
Current Position: Postdoctoral researcher, Central European Institute of Technology, Brno, Czech Republic
Education: PhD, Department of Botany,…
Review: Emerging mechanisms to fine-tune receptor kinase signaling specificity (COPB)
Plant Science Research WeeklyMaybe it’s because I’ve spent too much time in lockdown, but sometimes I find studies on cell signaling a bit impenetrable. Fortunately, this excellent review by Galindo-Trigo et al. has arrived, which elegantly walks the reader through the crowded world of receptor-like kinases and “how cells…
Modifying plant photosynthesis and growth via simultaneous chloroplast transformation of Rubisco large and small subunits (Plant Cell)
Plant Science Research WeeklyIn an interesting evolutionary artifact, the genes encoding the small subunit of Rubisco, rbcS, reside in the nuclear genome, whilst those encoding RbcL persists in the chloroplast. The RbcS protein is translocated into the chloroplast where the holoenzyme forms. This complexity adds to the challenge…
Variation in maize chlorophyll biosynthesis alters plant architecture (Plant Physiol)
Plant Science Research WeeklyThis is an interesting paper that combines classical genetics with biochemistry and phenotypic analysis. Khangura et al. looked at maize lines with various allelic combinations of two loci that affect chlorophyll biosynthesis: the oil yellow1 (oy1) gene encodes magnesium chelatase, the first committed…
Conserved gene regulatory network integrated with stress response factors in radish and Arabidopsis root cambium (Curr. Biol.)
Plant Science Research WeeklyThe cambium is a layer of actively dividing cells between xylem and phloem tissues that is responsible for the thickening of primary or lateral roots and stems. Root crops are tightly associated with the cambium regulatory mechanism which is less characterized in root as compared to shoot development.…
Rocks in the auxin stream: Wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration (PNAS)
Plant Science Research WeeklyPlants have evolved exquisite regenerative capacities to repair wounds or even reform complete organs thanks to the proliferative activity of stem cell niches residing in meristems. Different types of injuries elicit different developmental and regenerative responses. However, a key player seems to be…
Seed traits determine species responses to fire under varying soil heating scenarios ($) (Funct. Ecol.)
Plant Science Research WeeklySoil seed banks allow plants to persist in fire-prone ecosystems. However, if seeds are buried too deep, seedling emergence can be inhibited. The maximum depth at which seeds can be buried without hampering recruitment is expected to be shaped by different seed traits, although this has been seldom tested.…
Extracellular proteolytic cascade in tomato activates immune protease Rcr3 (PNAS)
Plant Science Research WeeklyThe plant apoplast is a sea of immune-related proteins that facilitate robust defense against pathogens. Rcr3 is a tomato secreted apoplastic protease that contributes to both basal defense and gene-for-gene resistance against pathogens. Rcr3 is activated by the cleavage of its autoinhibitory prodomain,…
Optimizing PollenCounter for high throughput phenotyping of pollen quality in tomatoes (MethodsX)
Plant Science Research WeeklyPollenCounter is an open source, ImageJ based macro that splits RGB images of stained pollen grains into the primary channels. The program estimates pollen viability in plants through analyzing red (total number of pollen grains) and green (only viable pollen grains) images, after which the particles…
Plant Science Research Weekly: July 17, 2020
WWR Full PostReview: Emerging mechanisms to fine-tune receptor kinase signaling specificity
Maybe it’s because I’ve spent too much time in lockdown, but sometimes I find studies on cell signaling a bit impenetrable. Fortunately, this excellent review by Galindo-Trigo et al. has arrived, which elegantly walks…
Recognizing Plant Physiology authors: Will B. Cody
Plant Physiology, Plant Physiology: Author ProfilesWill B. Cody, first author of Native processing of sgRNA transcripts to create catalytic Cas9/sgRNA complexes in planta
Current Position: Postdoctoral Scholar at Stanford University
Education: Ph.D. in Plant Pathology at Texas A&M University; B.S in Bioenvironmental Sciences at Texas A&M…
Recognizing Plant Direct authors: Ashley E. Cannon
Plant Direct, Plant Direct: Author ProfilesAshley E. Cannon, first author of Lipophilic-Signals Lead to Organ-Specific Gene Expression Changes in Arabidopsis Seedlings
Current Position: Postdoctoral Research Associate in Dr. Kent Chapman’s Lab at The University of North Texas
Education: B.S. in Chemistry from Midwestern State University…
A novel role for a phospholipase D in plant immunity
Plant Physiology: News and Views, ResearchBy Marcelo Lattarulo Campos
[email protected]
Integrative Plant Research Laboratory, Departamento de Botânica e Ecologia, Instituto de Biociências, Universidade Federal de Mato Grosso, Cuiabá/MT, Brazil.
A fundamental tenet of any immune system is the ability to detect the presence…
Unregulated Sphingolipid Biosynthesis in Arabidopsis ORM Mutants
Research, The Plant Cell, The Plant Cell: In a NutshellGonzalez Solis et al. describe the metabolic, cellular, and physiological consequences of the complete loss of regulation of sphingolipid biosynthesis. Plant Cell https://doi.org/10.1105/tpc.20.00015
By Ariadna Gonzalez Solis and Edgar B. Cahoon
Background: Glycosphingolipids are molecules…
Author Editing Services
Blog, Pubs PagesDiscounts available for ASPB authors
ASPB’s journals are continually evolving to improve the author experience so that researchers think of The Plant Cell and Plant Physiology first when deciding where to publish their best work. Most recently, we have negotiated a discount for authors who wish…
Allyl-GSL Catabolites and Root Development
Plant Physiology, Plant Physiology: On The InsideIn order to survive attacks by pathogens and herbivores, plants have developed a variety of defense mechanisms and resistance strategies, including the production of defensive chemicals. Such defense chemicals, however, can have detrimental effects on growth or can introduce ecological costs by attracting…
Root Foraging under Low Nitrogen Depends on Brassinosteroids
Plant Physiology, Plant Physiology: On The InsidePlant root systems alter their architecture upon encountering spatial heterogeneity in the nutrient concentrations of the soil. For example, when roots are subjected to decreasing N availability that causes mild N deficiency, lateral root emergence increases moderately, whereas elongation of primary…
Recognizing Plant Cell authors: Kaushik Panda
The Plant Cell, The Plant Cell: Author ProfilesKaushik Panda, first author of Long-read cDNA Sequencing Enables a 'Gene-Like' Transcript Annotation of Transposable Elements
Current Position: Postdoctoral Associate in the Slotkin Laboratory at Donald Danforth Plant Science Center, St. Louis, Missouri, USA
Education: Ph.D. in Molecular Genetics,…
Recognizing Plant Physiology authors: Rajdeep Khangura
Plant Physiology, Plant Physiology: Author ProfilesRajdeep Khangura, first author of Variation in maize chlorophyll biosynthesis alters plant architecture
Current Position: Post-Doctoral Researcher in the group of Dr. Brian Dilkes, Department of Biochemistry and Center for Plant Biology, Purdue University, West Lafayette, Indiana, USA
Education:…
Melatonin Represses Oil and Anthocyanin Accumulation in Seeds
Plant Physiology, Plant Physiology: On The InsideMelatonin is a highly conserved bioactive molecule present in all plant species. It is produced from serotonin through two consecutive enzymatic steps. Serotonin is converted into either N-acetylserotonin by serotonin N-acetyltransferase (SNAT) or into 5- methoxytryptamine by caffeic acid O-methyltransferase…
ASPB journals announce journal portability initiative
Blog, Pubs PagesThe American Society of Plant Biologists (ASPB) is pleased to announce that, effective immediately, authors who have received an editorial decline decision from any journal in the ASPB suite of titles will have the option to transfer their submissions to any other ASPB journal.
ASPB publishes three…
Role of Cell Wall Invertase in Ovule Development
Plant Physiology, Plant Physiology: On The InsideApart from its well-known function in Suc unloading, cell wall invertase (CWIN), an enzyme that catalyzes the hydrolysis of Suc into Fru and Glc, also plays a role in sugar signaling and plant development. As an example of CWIN playing a role in plant development, Liao et al. (10.1104/pp.20.00400)…
FRA1 Kinesin Prevents Cell Wall Deposition from Going Off the Rails
Research, The Plant Cell, The Plant Cell: In BriefCellulose, hemicellulose, and pectin are the brick and mortar of the plant kingdom, and how they are laid has substantial impacts on plant morphology. Plant cell shape is dictated by the interplay between turgor pressure and heterogeneity in cell wall composition, whereby localized cell wall loosening…
MtSSPdb—a new data base for the small secreted peptide research community
Plant Physiology, Plant Physiology: News and Views, ResearchEva Hellmann, The Sainsbury Laboratory, University of Cambridge, CB2 1LR Cambridge, United Kingdom, https://orcid.org/0000-0002-4591-2973
[email protected]
Small secreted peptides (SSPs) are short peptides that function as messengers and regulate a variety of processes in plants…
Brassinosteroids Promote Greening of Etiolated Seedlings
Research, The Plant Cell, The Plant Cell: In a NutshellWang et al. demonstrate that BRs play important roles in seedling development and survival during the initial emergence of seedlings from subterranean darkness into sunlight. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00057.
By Lingyan Wang,Yanchen Tian, Wen Shi, Min Fan and Ming-Yi Bai,…
Recognizing Plant Physiology authors: Firoz Ahmed
Plant Physiology, Plant Physiology: Author ProfilesFiroz Ahmed, first author of pssRNAit-a web server for designing effective and specific plant siRNAs with genome-wide off-target assessment
Current Position: Assistant Professor, Department of Biochemistry, University of Jeddah, Jeddah, Saudi Arabia
Education: Ph.D. in Bioinformatics from Jawaharlal…
How Cultivated Watermelon Derived its Red Flesh
Plant Physiology, Plant Physiology: On The InsideModern cultivated watermelons (Citrullus lanatus) are sweet tasting and tender, with intensely colored flesh that ranges in hue from yellow to deep red. These colors are produced by the accumulation of various carotenoids in the flesh cells. Red-fleshed watermelons that accumulate lycopene in their flesh…
Hydrogen Gas Regulates Cadmium Uptake
Plant Physiology, Plant Physiology: On The InsideCadmium (Cd) is a toxic heavy metal that is relatively mobile in the soil and has become a serious worldwide environment problem. Cd is easily taken up by plant roots where it can be loaded into the xylem and transported to above-ground tissues. Cd accumulation in the shoot inhibits plant growth and…
Improving crop water-use efficiency requires optimizing the circadian clock
Plant Physiology, Plant Physiology: News and Views, ResearchMeisha Holloway-Phillips
Department of Environmental Sciences, University of Basel, Switzerland
[email protected]
The slogan, ‘more crop per drop’, which was popularised in the early 2000s, depicts the need to improve the productivity of crops for the same water inputs (Kijne…
Location, location, location: phototropin 2 action at the chloroplast membrane
Plant Physiology, Plant Physiology: News and Views, ResearchAs someone with a background in plant molecular genetics, I confess to occasionally forgetting about location. Reverse genetics is a powerful tool for picking apart gene networks, but in which organ do these genes act? Which tissue of that organ? Which cells of that tissue and which compartment of those…
Review: Banishing barberry: The history of Berberis vulgaris prevalence and wheat stem rust incidence across Britain (Plant Pathology)
Plant Science Research WeeklyPuccinia graminis f. sp. tritici (Pgt) has a strange life strategy in that it requires two hosts to complete its sexual life cycle; wheat and barberry. In the absence of barberry, it reproduces clonally; clonal reproduction limits its ability to generate diversity and therefore its ability to evade plant…
An inducible genome editing system for plants (Nature Plants)
Plant Science Research WeeklyTo understand gene function, it is necessary to study loss-of-function phenotypes. However, knockouts of some genes are lethal, which makes it impossible to study their loss-of-function phenotype. Although here are inducible overexpression systems and inducible knockdown systems, as yet there has been…
An optogenetic tool for plants grown in ambient light (Nature Methods)
Plant Science Research WeeklyOptogenetics has revolutionized mammalian biology by its ability to fine-tune gene expression in individual cells by pulses of light. However, its application in plants has been challenging because the white light required for plant growth misfires the system. Ochoa-Fernandez et al. solved this problem…
Fluctuating auxin response gradients determine pavement cell-shape acquisition (PNAS)
Plant Science Research WeeklyThe leaf epidermis is composed primarily of undulated pavement cells arranged in a jigsaw puzzle-like architecture, with neighboring cells flawlessly interlacing with one another thanks to synchronized growth, thus making it an ideal model to study morphogenesis regulation. Seeking to better understand…
Pan-genome of wild and cultivated soybeans (Cell)
Plant Science Research WeeklyWidespread genome sequencing of individuals has revealed the high level of intraspecific variability in plant species. As such, constructing high-quality pan-genomes is a growing necessity to study dynamic plant genomes. Here, Liu et al. release the soybean pan-genome formed from sequencing 2,898 accessions,…
A CEP Peptide receptor-like kinase regulates root growth and symbiotic nodulation (Plant Cell)
Plant Science Research WeeklyUnder low N condition, plants form more lateral roots to facilitate N-uptake efficiency, and legumes such as Medicago truncatula develop more nodules to fulfill plant nitrogen requirements. Since both lateral root formation and nodulation are energy-consuming processes, plants balance these developmental…
Identification of novel seed longevity genes by GWAS and reverse genetics (Plant Cell Environ.)
Plant Science Research WeeklySeed longevity (i.e., the inherent lifespan of a seed) is a polygenic feature that demands the coordination of multiple biological processes, and that shapes the persistence of seeds in the soil and the time they can be stored ex situ. Recent studies on this trait highlight the role of the antioxidant…
Plant Science Research Weekly: July 10, 2020
WWR Full Post
Review: Banishing barberry: The history of Berberis vulgaris prevalence and wheat stem rust incidence across Britain
Puccinia graminis f. sp. tritici (Pgt) has a strange life strategy in that it requires two hosts to complete its sexual life cycle; wheat and barberry. In the absence…
Recognizing Plant Cell authors: Maxuel de Oliveira Andrade
The Plant Cell, The Plant Cell: Author ProfilesMaxuel de Oliveira Andrade, first author of The MAF1 phosphoregulatory region controls MAF1 interaction with the RNA polymerase III C34 subunit and transcriptional repression in plants
Current Position: Postdoctoral Research, Biochemistry, Brazilian Bioscience National Laboratory (LNBio) - CNPEM, Brazil
Education:…
Recognizing Plant Physiology authors: Ariel Hernán Tomassi
Plant Physiology, Plant Physiology: Author ProfilesAriel Hernán Tomassi, first author of The intrinsically disordered protein CARP9 bridges HYL1 to AGO1 in the nucleus to promote micro RNA activity
Current Position: PhD fellow at Instituto de Agrobiotecnología del Litoral (CONICET-UNL), Santa Fe, Argentina
Education: Ph.D. in Biological Sciences
Non-scientific…
Recognizing Plant Cell authors: Bastian Oldenkott
The Plant Cell, The Plant Cell: Author ProfilesBastian Oldenkott, first author of Reciprocal complementation with moss and angiosperm editing factors
Current Position: PhD Candidate in the Department for Molecular Evolution belonging to the Insitute for Cellular and Molecular Botany (IZMB) of the Rheinische Friedrich-Wilhelms-Universität Bonn
Education:…
Recognizing Plant Physiology authors: Weiping Mo
Plant Physiology, Plant Physiology: Author ProfilesWeiping Mo, first author of PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress
Current Position: Ph.D. candidate at the Institute of Botany, Chinese Academy of Sciences
Education: B.S. from South China Agricultural University (SCAU), and…
Recognizing Plant Direct authors: Bhuvan Pathak
Plant Direct, Plant Direct: Author ProfilesBhuvan Pathak, first author of Recombinase-mediated integration of a multigene cassette in rice leads to stable expression and inheritance of the stacked locus
Current Position: Program Associate, University of Arkansas
Education: PhD in Cell and Molecular Biology (2019) - University of Arkansas;…
NIT proteins regulate rice root plasticity in response to nitrate and ammonium
Plant Physiology, Plant Physiology: News and Views, ResearchLena Maria Müller
Boyce Thompson Institute, Ithaca, NY, USA
Nitrogen (N) is a critical element in plant nutrition and an important building block of amino acids, nucleic acids, and secondary metabolites. Roots take up N mainly in the form of nitrate (NO3-) and ammonium (NH4+). To feed a growing…
2-in-1-GEFIs: Biosensors for two plant signals at one time
Research, The Plant Cell, The Plant Cell: In a NutshellWaadt et al. use a suite of genetically encoded biosensors to monitor signaling compound concentration changes and how they overlap in time and space. Plant Cell https://doi.org/10.1105/tpc.19.00892
By Rainer Waadt
Background: To survive, plants need to sense the environment and adjust their growth…
Recognizing Plant Cell authors: Jiaqi Sun
The Plant Cell, The Plant Cell: Author ProfilesJiaqi Sun, first author of LUNAPARK Is an E3 Ligase that Mediates Degradation of ROOT HAIR DEFECTIVE3 to Maintain a Tubular ER Network in Arabidopsis
Current Position: Post-Doc Research Fellow, Biology Department, McGill University
Education: B. Sc. in Agriculture from Zhejiang University, China;…
Recognizing Plant Physiology authors: Maja Arsic
Plant Physiology, Plant Physiology: Author ProfilesMaja Arsic, first author of Bio-imaging techniques reveal foliar phosphate uptake pathways and leaf phosphorus status
Current Position: PhD student (University of Copenhagen and the University of South Australia)
Education: Bachelor of Science (Advanced with Class I Honours), Griffith University…
Recognizing Plant Physiology authors: Duncan Coleman
Plant Physiology, Plant Physiology: Author ProfilesDuncan Coleman, first author of The SUMO E3 ligase SIZ1 negatively regulates shoot regeneration
Current Position: PhD Student, Graduate School of Science, The University of Tokyo
Education: MSc Biosciences, Nara Institute of Science and Technology (NAIST), Japan; BSc Biology, Biochemistry and Geography,…
Recognizing Plant Physiology authors: Kate Johnson
Plant Physiology, Plant Physiology: Author ProfilesKate Johnson, first author of Xylem embolism spreads by single-conduit events in three dry forest angiosperm stems
Current Position: PhD candidate, Discipline of Biological Sciences, School of Natural Sciences, University of Tasmania
Education: BSc and Hons from the University of Tasmania
Non-scientific…
Recognizing Plant Cell authors: Fugui Zhu
The Plant Cell, The Plant Cell: Author ProfilesFugui Zhu, first author of A CEP Peptide Receptor-like Kinase Regulates Auxin Biosynthesis and Ethylene Signaling to Coordinate Root Growth and Symbiotic Nodulation in Medicago truncatula
Current Position: Postdoc, China Agriculture University
Education: Ph.D. in China Agriculture University; B.S.…
From fuzz to fiber – identification of genes involved in cotton fiber elongation
Plant Physiology, Plant Physiology: News and Views, ResearchKim L Johnson
La Trobe Institute for Agriculture & Food, Department of Animal, Plant and Soil Sciences, La Trobe University, Bundoora, Victoria 3086, Australia
Email: [email protected]
At least some of the clothing you are wearing is likely made of cotton, and you are not alone. Cotton…
No Entry: SIF2 Closes Stomatal “Doors” to Bacteria by Making Guard Cells SLAC(1)
Research, The Plant Cell, The Plant Cell: In BriefBacteria use stomatal pores as a point of entry to invade plant leaves. As a first line of defense, plants attempt to counteract this attack by restricting bacterial entry simply by closing the stomata. This happens via reduction in turgor pressure of the two guard cells flanking the stomatal pore, the…
CBL2-CIPK6-TST2-mediated regulation of sugar homeostasis
Plant Physiology, Plant Physiology: News and Views, ResearchSugars have a key role in numerous cellular processes, and thus their storage and distribution are tightly controlled to ensure appropriate access when needed. In plants, the vacuole is the major storage organelle. The tonoplast (vacuole membrane) contains various transporters that regulate sugar and…
How a motor keeps its track from wandering
Research, The Plant Cell, The Plant Cell: In a NutshellGanguly et al. establish that a transporter protein helps stabilize cell wall deposition sites.
Plant Cell https://doi.org/10.1105/tpc.19.00700
By Anindya Gangulya and Ram Dixit
Department of Biology and Center for Engineering Mechanobiology, Washington University in St. Louis, MO 63130, USA
a…
Review: Feedback mechanisms between membrane lipid homeostasis and plant development (Dev. Cell)
Plant Science Research WeeklyPlant development is a regulated process of cell division, expansion, and differentiation. Membrane lipids are crucial to these processes, as illustrated in this review by Boutté and Jaillais. The authors discuss the major lipid components in the different membrane systems and how these vary in space…
Review. Plant nutrition for human nutrition: Hints from rice research and future perspectives
Plant Science Research WeeklyAmong all the mineral elements transported from the soil to the plant, cadmium (Cd) and arsenic (As)- are toxic for all organisms whereas 13 micronutrients, including iron (Fe) and zinc (Zn), are beneficial for both human and plant nutrition. Ideally, food crops should accumulate fewer soil contaminants…
Review. Endosperm variability: From endoreduplication within a seed to higher ploidy across species, and its competence ($) (Seed Sci. Res.)
Plant Science Research WeeklyIn addition to its well-known nutritive function, the endosperm of seeds has a great deal of morphological, genomic and functional diversity. In this review, Rangan summarizes endosperm variability and the molecular mechanisms behind it. Although classically described as being triploid (2n from the mother…
The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants (Nature Ecol. Evol.)
Plant Science Research WeeklyThe green plant lineage (Viridiplantae) has long been described as having a single origin (starting with the engulfment of a cyanobacteria-like endosymbiont) that has led to two phyla: the Streptophyta, including embryophytes (land plants) and some algae such as chara and nitella, and the Chlorophyta,…
Mutation bias shapes gene evolution in Arabidopsis thaliana (bioRxiv)
Plant Science Research WeeklyClassical evolutionary theory states that the probability of a mutation occurring is independent of fitness consequences. However, reassessment of traditional assumptions is warranted with recent discoveries showing that cytogenetic (DNA sequences and epigenetic) features can affect local mutation probabilities.…
Plastocyanin is the long-range electron carrier between photosystem II and photosystem I in plants (PNAS)
Plant Science Research WeeklyIn linear electron transport (LET), electrons are passed from photosystem II to photosystem I, but it has not been clear which of two mobile electron carriers is responsible, plastocyanin (PC) or plastoquinone (PQ). PQ carries electrons from PSII to the cyt b6f complex and PC from there to PSI. Höhner…
Vacuolar channel CLCa is involved in guard cell pH homeostasis (PNAS)
Plant Science Research WeeklyIn plants, stomata are involved in a host of responses, controlled by ion homeostasis in guard cells. In an attempt to understand the function of a plant chloride channel (CLC), CLCa, which transports chloride (Cl-) and nitrate (NO3-) in guard cells, Demes and colleagues sought to establish a relationship…
MscS-like 10 as a cell swelling sensor and promotes hypo-osmotic shock responses (Curr. Biol.)
Plant Science Research WeeklyOptimal volume and turgor in the plant cell is important for metabolism, development and growth. Excessive diffusion of water into the cell will cause extreme swelling and a loss of cellular integrity. Members of the plasma membrane MscS-like (MSL) family of mechanosensitive (MS) ion channels play a…
Reprogramming of stem cell activity to convert thorns into branches (Curr. Biol.)
Plant Science Research WeeklyThorns are modified axillary shoots with a sharp tip that helps in deterring herbivores and are found among several families of angiosperms. Thorns develop from their meristem-like tip to their base, but unlike branches they are determinate organs. The mechanism of their terminal differentiation into…
Genes of the RAV family control heading date and carpel development in rice (Plant Physiol)
Plant Science Research WeeklySeed-bearing annual plants essentially get one shot at getting their reproductive timing right; too early and there won’t be enough stored nutrients to produce healthy seeds, and too late and the seeds might not mature fully before bad weather or rot sets in. Previously, the RAV (RELATED TO ABI3 AND…
Plant-herbivore chemical communication decoded (Science)
Plant Science Research WeeklyChemical communications between species are prevalent in nature. For instance, herbivorous insects can spot their host plants by sensing volatile organic compounds (VOCs) emitted by plants. Despite our knowledge about interactions between individual plant and herbivore species, little is known about…
Induced tolerance to abiotic and biotic stresses of broccoli and Arabidopsis after treatment with elicitor molecules (Sci. Rep.)
Plant Science Research WeeklyPlant hormones such as jasmonates (JAs) and salicylic acid (SA) are known for their role in regulating plant growth under both abiotic and biotic stresses. These hormones, which are synthesized within the plant, can modulate cellular processes in targeted cells locally and can be moved to other parts…
Plant Science Research Weekly: July 3rd
WWR Full PostReview: Feedback mechanisms between membrane lipid homeostasis and plant development
Plant development is a regulated process of cell division, expansion, and differentiation. Membrane lipids are crucial to these processes, as illustrated in this review by Boutté and Jaillais. The authors discuss…
AT the Onset of DNA Replication in Arabidopsis
Plant Physiology, Plant Physiology: News and Views, ResearchAuthor
Anne-Sophie Fiorucci
Affiliation
Centre for Integrative Genomics, Faculty of Biology and Medicine, Génopode Building, University of Lausanne, CH-1015 Lausanne, Switzerland.
ORCID number
0000-0002-3254-5967
DNA replication allows doubling of the genomic content of a cell before…
It takes two to tango: two GNOMs have to activate ARF1 together
Research, The Plant Cell, The Plant Cell: In a NutshellBrumm et al. investigate how the protein GNOM activates dimers of the small GTPase ARF1 and inserts them very close to each other during vesicle formation. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00240
By Sabine Brumm 1,2 and Gerd Jürgens 1, ZMBP, University of Tübingen (1), Sainsbury…
Phosphoregulation within the photorespiratory cycle: regulate smarter - adapt better?
Plant Physiology, Plant Physiology: News and Views, ResearchMarc-Sven Roell1
ORCID ID: 0000-0003-2714-8729
1Institute of Plant Biochemistry, Heinrich-Heine University Düsseldorf, Universitätsstrasse 1, 40225 Düsseldorf, Germany
[email protected]
To cope with various abiotic and biotic stress factors, plants must be facile in adapting cellular…
Overcoming Algal Vitamin B12 Auxotrophy by Experimental Evolution
Plant Physiology, Plant Physiology: News and Views, ResearchVitamin B12 (B12) is produced only by prokaryotes (Fang et al., 2017), but is also widely required among eukaryotes as an enzymatic cofactor. In the green lineage, the only B12-dependent enzyme is methionine synthase. Several green algae can synthesize methionine only thanks to B12 provided by mutualistic…
How Do Plants Adapt to Dark and Bright Light Conditions?
Research, The Plant Cell, The Plant Cell: In a NutshellKimura et al. illuminate a molecular mechanism to allow germinating seedlings of Arabidopsis thaliana to adapt to dark and bright light conditions during hypocotyl phototropism. Plant Cell https://doi.org/10.1105/tpc.19.00926
By Taro Kimura and Tatsuya Sakai; Graduate School of Science and Technology,…
Plant Biology 2020 workshop: Get Your Message Across: A Guide to Artwork and Illustrations for Better Impact and Clarity
Blog, Pubs PagesAttending PB20? Join the ASPB publications team, including editors of The Plant Cell, Plant Direct, and Plant Physiology, for a live discussion about making great figures and illustrations!
Wednesday, July 29, 1:30-2:30 EDT.
This workshop will cover the production of artwork and illustrations that…
Recognizing Plant Direct authors: Aashima Khosla
Plant Direct, Plant Direct: Author ProfilesAashima Khosla, first author of A series of dual-reporter vectors for ratiometric analysis of protein abundance in plants
Current Position: Postdoctoral Research Fellow, Department of Botany and Plant Sciences, University of California, Riverside, USA
Education: PhD in Biochemistry and Molecular…
Calcium signaling in senescence
Research, The Plant Cell, The Plant Cell: In a NutshellDurian et al. searched for phosphorylation substrates of Arabidopsis CALCIUM DEPENDENT PROTEIN KINASE1 and found that it phosphorylates ORE1, a master regulator of senescence, demonstrating a link between calcium signaling and cell death. Plant Cell https://doi.org/10.1105/tpc.19.00810
By Guido…
Review: Plant small heat shock proteins – evolutionary and functional diversity (New Phytol.)
Plant Science Research WeeklyHeat shock proteins are rapidly induced by heat treatment and were among the first plant genes and proteins characterized in the early days of molecular biology, nearly 40 years ago. Waters and Vierling review the family of small heat shock proteins (sHSPs), which has been especially amplified in plants…
Review. Plant immunity: Danger perception and signaling (Cell)
Plant Science Research WeeklyResearch from the last three decades has discovered many genes and pathways involved in plant immunity and how they are connected. Here, Zhou and Zhang highlight new research regarding activation and signaling of cell surface pattern recognition receptors (PRRs) and intracellular nucleotide-binding,…
Review. The plant microbiome: From ecology to reductionism and beyond (Annu. Rev. Microbiol.)
Plant Science Research WeeklyThe last two decades have witnessed tremendous progress in our understanding of plant microbiota. Fitzpatrick, Salas-González et al. highlight recent discoveries from culture-dependent and culture-independent approaches and discuss the future path towards integrating these approaches. Culture-independent…
Convergent loss of plant immune receptors and signaling pathways (Plant Cell)
Plant Science Research WeeklyNucleotide-binding leucine-rich repeat receptors (NLRs) are important components of the plant immune system. They are intracellular receptors that act downstream of the cell-surface receptors, and initiate the so-called effector-triggered immunity (ETI). In most plants, the NLR gene family is large and…
Multidimensional gene regulatory landscape of a bacterial pathogen in plants (Nature Plants)
Plant Science Research WeeklyThe outcome of a plant-bacteria interaction is determined by the bacterial virulence and plant immune systems. Individually, these systems, and to an extent their interactions, have been well studied. However, certain aspects of their interactions remain elusive, particularly how plant immunity affects…
Major impacts of widespread structural variation on gene expression and crop improvement in tomato (Cell)
Plant Science Research WeeklyStructural Variants (SVs) are large genomic deletions, insertions, and duplications with underexplored roles in determining plant phenotypes. Recognizing the extent to which SVs define quantitative trait variation was previously constrained by the fact that popular short-read sequencing technologies…
The 3′ processing of antisense RNAs physically links to chromatin-based transcriptional control (PNAS)
Plant Science Research WeeklyIn Arabidopsis, multiple genetic pathways control the floral transition in response to external and internal stimuli. Among these, components of the autonomous pathway promote flowering by negatively regulating the central floral repressor FLOWERING LOCUS C (FLC). Despite the wealth of information on…
Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato (Sci. Reports)
Plant Science Research WeeklyUbiquitination is a process of adding ubiquitin (a small regulatory protein) to a substrate protein, leading to its degradation. A wide variety of cellular processes necessary for plant growth and development are regulated by ubiquitination. E3 ubiquitin ligases are the largest family of proteins involved…
Highly active rubiscos discovered by systematic interrogation of natural sequence diversity (EMBO J)
Plant Science Research WeeklyThis is a fascinating and very well-written paper that investigates the diversity of rubisco's kinetic properties. Rubisco’s relationship with its substrate CO2 is complicated by its relationship with O2, and it has often been suggested that for this reason rubisco is locked into a slow rate of catalysis.…
Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division (PNAS)
Plant Science Research WeeklyStem cells are a group of undifferentiated cells that can divide and differentiate to form new organs. In Arabidopsis roots, the quiescent center (QC: the mitotically inactive group of cells) helps regulate the division of surrounding initials and maintain the stem cell fate. What makes the QC different…
Macroevolutionary patterns in seed component mass and different evolutionary trajectories across seed desiccation responses ($) (New Phytol)
Plant Science Research WeeklySeeds are made out of two functionally distinct components: the seed coat and the seed reserves (which include endosperm and embryo). It is known that the relative contribution of these parts to the total seed mass varies greatly among species. Still, little is known about the evolution of each component's…
Plant Science Research Weekly: June 26th
WWR Full PostReview: Plant small heat shock proteins – evolutionary and functional diversity
Heat shock proteins are rapidly induced by heat treatment and were among the first plant genes and proteins characterized in the early days of molecular biology, nearly 40 years ago. Waters and Vierling review the family…
Sulfotransferase 1 is the enzymatic hub of sulfated salicinoids in poplar.
Plant Physiology, Plant Physiology: News and Views, ResearchPlants produce a plethora of specialized metabolites serving as a chemical arsenal against abiotic and biotic challenges during their lifetime. Core metabolites serve as building blocks for diverse decorating enzymes like oxidases, reductases or transferases that introduce new functionalities expanding…
Recognizing Plant Physiology authors: Yuta Kikuchi
Plant Physiology, Plant Physiology: Author ProfilesYuta Kikuchi, first author of Chloroplast autophagy and ubiquitination combine to manage oxidative damage and starvation responses
Current Position: a company employee
Education: MSc in Life Science, Tohoku University, Japan
Non-scientific Interests: cooking, traveling, playing golf
Brief bio:…
Recognizing Plant Physiology authors: Fanfan Zhang
Plant Physiology, Plant Physiology: Author ProfilesFanfan Zhang, first author of The SUN domain proteins OsSUN1 and OsSUN2 play critical but partially redundant roles in meiosis
Current Position: Post doctor, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
Education: PhD in Genetics (Institute of Genetics…
Recognizing Plant Physiology authors: Alessandra Boccaccini
Plant Physiology, Plant Physiology: Author ProfilesAlessandra Boccaccini, first author of Low blue light enhances phototropism by releasing cryptochrome 1-mediated inhibition of PIF4 expression
Current Position: Post-doctoral fellow at Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne
Education: Ph.D. in “Life…
Recognizing Plant Physiology authors: Zongcheng Lin
Plant Physiology, Plant Physiology: Author ProfilesZongcheng Lin, first author of Ectopic expression of a self-incompatibility module triggers growth arrest and cell death in vegetative cells
Current Position: FWO senior postdoc fellow, VIB-UGent joint Center for Plant Systems Biology, Belgium
Education: Bachelor, Harbin Institute of Technology;…
ASTREL Projection: Comparative Phylogenomics Uncovers Novel Genes Co-eliminated with the EDS1 Immune Pathway
Research, The Plant Cell, The Plant Cell: In BriefThe plant immune system is largely centered around immune receptors that monitor for pathogen-derived signatures. Extracellular immunity is afforded through cell-surface receptors recognizing common microbial motifs like bacterial flagellin or fungal chitin (Boutrot and Zipfel, 2017). By contrast, intracellular…
What Are the Roles for Dehydroascorbate Reductases and Glutathione in Sustaining Ascorbate Accumulation?
Plant Physiology, Plant Physiology: News and Views, ResearchElisa Dell’Aglio1 and Amna Mhamdi2
1 Institut National des Sciences Appliquées-Lyon, 69100 Villeurbanne, France
2 Ghent University, Department of Plant Biotechnology and Bioinformatics, and VIB Center for Plant Systems Biology, 9052 Ghent, Belgium
Address correspondence to [email protected]
Ascorbate…
Cold-responsive Regulatory DNA Landscapes and Regulatory Networks in Grasses
Research, The Plant Cell, The Plant Cell: In a NutshellHan et al. uncover regulatory DNA landscapes in root, stem, and leaf tissues of multiple grasses. Plant Cell https://doi.org/10.1105/tpc.19.00716
By Kai Wang and Jinlei Han
Fujian Agriculture and Forestry University
Background: Low temperature is a major environmental stress that affects…
Recognizing Plant Physiology authors: Qiufang Shen
Plant Physiology, Plant Physiology: Author ProfilesQiufang Shen, first author of Calmodulin HvCaM1 negatively regulates salt tolerance via modulation of HvHKT1s and HvCAMTA4
Current Position: Postdoc, Institute of Crop Science, Zhejiang University, Hangzhou, P.R.China
Education:
2013/09-2018/06, PhD in Crop Science, Zhejiang University
2009/09-2013/06,…
Recognizing Plant Physiology authors: Michela Osnato
Plant Physiology, Plant Physiology: Author ProfilesMichela Osnato, first author of Genes of the RAV family control heading date and carpel development in rice
Current Position: science communication manager (@secretlifeofaplantbiologist), member of the Plantae fellow program
Education: MS in Plant Biotechnology and PhD in Plant biology and crop productivity…
Modifying ripening through modular transcription
Plant Physiology, Plant Physiology: News and Views, ResearchSophia G. Zebell
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
Manipulation of ripening, the process that turns hard, flavorless green tomatoes (Solanum lycopersicum) into the juicy, aromatic red fruits enjoyed worldwide, is of particular commercial…
Recognizing Plant Physiology authors: Robyn Roberts
Plant Physiology, Plant Physiology: Author ProfilesRobyn Roberts, first author of Molecular characterization of differences between the tomato immune receptors Flagellin sensing 3 and Flagellin sensing 2
Current Position: Postdoctoral Scientist at the Boyce Thompson Institute. Starting in August 2020 I will be an Assistant Professor at Colorado State…
Shooting for the STARRs: A Modified STARR-seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves
Research, The Plant Cell, The Plant Cell: In BriefA single genome gives rise to different cell types and organs in response to precise temporal and spatial regulation of gene expression, driven by developmental and environmental cues. These expression patterns are orchestrated by cis-regulatory elements, distal enhancers and gene-proximal promoters.…
Glutelin mRNAs are transported on endosomes
Research, The Plant Cell, The Plant Cell: In a NutshellTian et al. identify the factors mediating localization of specific mRNAs in developing rice endosperm cells. Plant Cell https://doi.org/10.1105/tpc.20.00111
by Li Tian and Thomas W. Okita
Background: Localization of mRNAs is a universal mechanism to efficiently drive protein targeting in eukaryotes…
Recognizing Plant Physiology authors: Jishan Jiang
Plant Physiology, Plant Physiology: Author ProfilesJishan Jiang, first author of Retrograde induction of phyB orchestrates ethylene-auxin hierarchy to regulate growth
Current Position: Candidate for a tenure track faculty position, college of Grassland Science and Technology at China Agricultural University, Beijing, China
Education: Ph.D; Forage…
Sulfoxidation of NON-RIPENING Affects Tomato Fruit Ripening
Plant Physiology, Plant Physiology: On The InsideTranscription factors (TFs) can be subject to multiple posttranslational modifications (PTMs) that affect protein stability, subcellular localization, interactions with corepressors and activators, and DNA binding activity of TFs, thereby influencing their regulatory activities on target genes. Recent…
An Intrinsically Disordered Protein Interacts with the Plant Cytoskeleton
Plant Physiology, Plant Physiology: On The InsideIntrinsically disordered proteins lack a defined three-dimensional structure but often contain a simple amino acid composition with repeated sequences that provide the basis for multivalent intermolecular interactions. Because of their unique structural flexibility, conformational adaptability, and…
A Peptide Hormone Receptor Controls Seed Size and Yield
Plant Physiology, Plant Physiology: On The InsideLeucine-rich repeat receptor-like kinases (LRR-RLK) are one of the largest gene families in plants. Research over the past decade has implicated LRR-RLKs and their selective interactions with secreted peptide hormones in a myriad of developmental processes. A conserved LRR-RLK with a burgeoning list…
Remorin and Plant Death
Plant Physiology, Plant Physiology: On The InsideProgrammed cell death (PCD) in plants is closely associated with a wide variety of biological processes, including cell differentiation, aleurone layer formation, tapetum degradation, leaf and fruit resistance, pathogen invasion and abiotic stresses. Plant PCD is a complex genetically programmed mechanism,…
Roots, Bacteria, Ethylene, and Rhizosheath Formation
Plant Physiology, Plant Physiology: On The InsideThe rhizosheath, the sticky part of the rhizosphere, is the layer of soil that adheres to roots upon excavation of the root system. The stickiness of the layer arises from mucilage and other substances secreted by roots, soil microbes or both. Rhizosheaths preferentially form in drier soil and are…
Durotropic Growth of Pollen Tubes
Plant Physiology, Plant Physiology: On The InsideUpon germination, the vegetative pollen cell forms a long tubular protrusion, the pollen tube, which rapidly elongates through the pistil and transports the enclosed immobile sperm cells toward the egg and the central cell for double fertilization. To reach the female gametophyte, growing pollen tubes…
Secret Talents: STARCH SYNTHASE 5—Not an Enzyme, but Very Active!
Research, The Plant Cell, The Plant Cell: In a NutshellAbt et al. found that Arabidopsis SS5, a protein homologous to typical starch-synthesizing enzymes, is itself enzymatically inactive, but rather has an important role in the starch granule initiation process. Plant Cell https://doi.org/10.1105/tpc.19.00946
By Melanie R. Abt and Samuel C. Zeeman, Institute…
Review Single-cell genomics and epigenomics: Technologies and applications in plants ($) (Trends Plant Sci)
Plant Science Research WeeklyPlants (embryophytes) are by definition multicellular, but we seek to understand them as the sum of the activities of individual cells. Much of this knowledge rests on information obtained through grinding up tissues made up from several cell types. This review by Luo et al. describes methods for plant…
RALF1-FERONIA complex affects splicing dynamics to modulate stress responses and growth in plants (Sci. Adv.)
Plant Science Research WeeklyAlternative splicing is a process that can produce two or more transcript isoforms from a single gene and can increase protein diversity. FERONIA (FER) is a receptor-like kinase that serves as a receptor for the rapid alkalinization factor (RALF) peptides that regulate multiple cellular activities in…
Divide to heal: auxin regulates wound-induced cell division in roots (PNAS)
Plant Science Research WeeklyAmong the stresses that sessile plants face, wounding is peculiar as it can be caused by both biotic and abiotic sources. While studies of wounding in animal systems have largely focused on the repair mechanisms, less is known about wound healing in plants. In an attempt to throw light on this, Hoermayer…
Dual-sensing genetically encoded fluorescent indicators, ABA and second messenger dynamics (Plant Cell)
Plant Science Research WeeklyResponses to a changing environment require an interplay between primary and secondary messengers. Hormones like abscisic acid (ABA), auxin etc. act as a primary messengers, whereas molecules like Ca2+, reactive oxygen species (ROS), other cations and anions act as a secondary messenger. In this paper,…
A FRET sensor reports kinase activity in planta (eLIFE)
Plant Science Research WeeklyAbscisic acid (ABA) is a phytohormone involved in imparting tolerance to a variety of stress conditions. Importantly, ABA is involved in stomatal closure, mediated by the sucrose non-fermenting1-related protein kinase 2 (SnRK2) family of proteins. To report SnRK2 activity in vivo, Zhang and co-workers…
Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars (Nature Comms)
Plant Science Research WeeklyCrop production is greatly influenced by the duration of the last stage of plant life cycle, senescence, through degradation of resources in leaves and remobilization of nutrients to developing seeds. Indeed, higher grain yield of important cereals such as maize and sorghum can be achieved by using stay-green…
Robotic Assay for Drought (RoAD): An automated phenotyping system for brassinosteroid and drought response (bioRxiv)
Plant Science Research Weekly
Developing drought tolerant plants is an important challenge in agriculture. Drought responses and plant growth are regulated by several signaling pathways, one of which is activated by brassinosteroids (BRs), a group of plant steroid hormones. In order to better understand the crosstalk…
Co‐catabolism of arginine and succinate drives symbiotic nitrogen fixation (Mol Sys Biol)
Plant Science Research WeeklySymbiotic nitrogen fixation is a mutualistic relationship between plants and microbes in which plants supply fixed carbon to bacteria in exchange for nitrogen. During this process, the microbes use nitrogenase enzyme to convert atmospheric nitrogen into a plant-usable form, but the metabolic interaction…
Influential neighbours: Seeds of dominant species affect the germination of common grassland species (J. Veg. Sci.)
Plant Science Research WeeklySeed-seed interactions can control the germination of grassland species. The result of this interaction (i.e., germination being inhibited or promoted) presumably depends on the dominance and taxonomic relatedness of interacting species. However, the relative importance of these factors is poorly explored.…
An aphid RNA transcript migrates systemically within plants and is a virulence factor (PNAS)
Plant Science Research WeeklyAphids are an important insect pest that can cause significant yield loss to crops, particularly through feeding damage and as vector for devasting plant pathogens. How aphids and other sap-feeding insects use their stylet to penetrate the plant vascular tissues is well studied but the factors involved…
Flowering plant composition shapes pathogen infection intensity and reproduction in bumble bee colonies (PNAS)
Plant Science Research WeeklyPathogens are one of many factors underlying pollinator decline. Diseases can be transmitted from commercial honeybees to wild bees through flowers. Bumble bees (Bombus impatiens) are infected by the gut pathogen Crithidia bombi which is contracted at flowers by fecal-oral transmission. However, not…
Plant genes for defense against insect eggs (bioRxiv)
Plant Science Research WeeklyPlants can recognize eggs of herbivorous insects deposited on leaves and mount defense responses to avoid the future threat of herbivory. Similar to plant hypersensitive response against pathogens, plants can cause localized cell death to defend themselves against insect eggs. This response is called…
Plant Science Research Weekly: June 19th
WWR Full PostReview Single-cell genomics and epigenomics: Technologies and applications in plants ($)
Plants (embryophytes) are by definition multicellular, but we seek to understand them as the sum of the activities of individual cells. Much of this knowledge rests on information obtained through grinding up…
Remodeling Chromatin in an ARID Environment
Research, The Plant Cell, The Plant Cell: In BriefThe control of gene expression is of fundamental importance for cellular life. In Eukaryotes, linear DNA is wrapped around nucleosomes that constitute a physical barrier to active transcription. Chromatin remodeling complexes modulate the composition, stability and positioning of nucleosomes therefore…
Hot on the trail of DREB2A protein stability
Plant Physiology, Plant Physiology: News and Views, ResearchMadeleine Seale
Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, United Kingdom
[email protected]
ORCID: 0000-0002-8924-3943
Responding to environmental stresses is crucial for plant survival. Research published this month in Plant…
Lipid kinases in signaling and metabolism
Research, The Plant Cell, The Plant Cell: In a NutshellAngkawijaya et al. investigate diacylglycerol kinase function in Arabidopsis phospholipid signaling and metabolism. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00251
By Artik Elisa Angkawijaya, Van C. Nguyen, Farrel Gunawan, and Yuki Nakamura, Institute of Plant and Microbial Biology, Academia…
Recognizing Plant Cell authors: Ariadna Gonzalez Solis
The Plant Cell, The Plant Cell: Author ProfilesAriadna Gonzalez Solis, first author of Unregulated Sphingolipid Biosynthesis in Gene-Edited Arabidopsis ORM Mutants Results in Nonviable Seeds with Strongly Reduced Oil Content
Current Position: PhD Candidate in the Department of Biochemistry & Center for Plant Science Innovation at the University…
Recognizing Plant Direct authors: Natasha Navet
Plant Direct, Plant Direct: Author ProfilesNatasha Navet, first author of Efficient targeted mutagenesis in allotetraploid sweet basil by CRISPR/Cas9
Current Position: Postdoctoral Researcher at the Oregon State University, Corvallis-OR, USA
Education: Ph.D. in Tropical Plant Pathology at the University of Hawaii at Manoa, USA. M.Sc. in…
Gibberellin signaling in plants – Entry of a new microRNA player
Plant Physiology, Plant Physiology: News and Views, ResearchRaimund Nagel
University of Leipzig
[email protected]
Gibberellins (GA) are essential hormones that control plant development as major regulators of stem elongation, germination, dormancy, flowering, leaf senescence and fruit development (Hedden and Thomas, 2012). Their biosynthesis…
It’s a TRAPP! Arabidopsis Transport Protein Particle (TRAPP) Complexes Contain a Novel Plant-Specific Subunit
Research, The Plant Cell, The Plant Cell: In BriefMembrane vesicle trafficking is the process of moving and distributing signaling molecules from their place of synthesis or capture to target locations inside or outside the cell. Vesicles, mobile membrane compartments produced from the endoplasmic reticulum, carry proteins and other molecules to an…
Recognizing Plant Physiology authors: Michael Taleski
Plant Physiology, Plant Physiology: Author ProfilesMichael Taleski, first author of The peptide hormone receptor CEPR1 functions in the reproductive tissue to control seed size and yield
Current Position: PhD Candidate in the Djordjevic Lab, Australian National University (ANU), Division of Plant Sciences
Education: B Science (Advanced) (Honours),…
An optimized high-throughput assay for the identification of enhancers in plant genomes
Research, The Plant Cell, The Plant Cell: In a NutshellJores et al. adapt STARR-seq for identifying enhancers in tobacco leaves.
Plant Cell https://doi.org/10.1105/tpc.20.00155
By Tobias Joresa, Jackson Tonniesa,b, Michael W Dorritya, Josh T Cuperusa, Stanley Fieldsa,c and Christine Queitscha
a Department of Genome Sciences, University of Washington,…
Essays on "What makes a paper *really* pioneering?"
Blog, Pubs PagesWhat makes a paper *really* pioneering?
This is the question we posed in a recent webinar.
We asked each of our panelists to write a few words on this question, each focusing on a slightly different angle. In the recorded video (below), you can hear the panelists elaborate on these ideas. Here…
EPSIN1 contributes to plant immunity by modulating the abundance of pattern recognition receptors at the plasma membrane
Plant Physiology, Plant Physiology: News and Views, ResearchWei Zhang
Department of Plant Pathology, Kansas State University, 1712 Claflin Road, Throckmorton Hall, Manhattan, KS, 66502, USA
[email protected]
ORCID 0000-0002-5092-643X
Plants have evolved many pattern recognition receptors (PRRs) that localize to the cell surface. As the frontline…
New Teaching Tool, "Three-Way Interactions between Plants, Microbes, and Arthropods (PMA): Impacts, Mechanisms, and Prospects for Sustainable Plant Protection"
Blog, Pubs Pages, The Plant CellWe’re excited to announce the publication of The Plant Cell’s latest Teaching Tool, “Three-Way Interactions between Plants, Microbes, and Arthropods (PMA): Impacts, Mechanisms, and Prospects for Sustainable Plant Protection,” by Maria J. Pozo, Benedicte R. Albrectsen, Eduardo R. Bejarano, Eduardo…
Review: Guard cell metabolism and stomatal function (Annu. Rev. Plant Biol.)
Plant Science Research WeeklyStomatal conductance, gs, is one of the most important and highly regulated plant processes. Lawson and Matthews review how guard cell metabolism, stomatal anatomy and patterning, and signals from the mesophyll affect gs which in turn affects plant productivity and water use efficiency. This is an excellent…
Review: Targeting root ion uptake kinetics to increase plant productivity and nutrient use efficiency (Plant Physiol.)
Plant Science Research WeeklyContinuous agricultural production is required to feed the growing population, and fertilizers are important factors determining the productivity of today’s high-input agriculture. Fertilizers increase the cost of production, some are produced from finite sources, and some create environmental concern,…
Review: An extended root phenotype: the rhizosphere, its formation and impacts on plant fitness (Plant J.)
Plant Science Research WeeklyThe rhizosphere is a continuous space for microbial colonization that comprises the rhizospheric soil, the rhizoplane (root surface), and the root endosphere, which is the apoplastic space in the root cortex. It is inhabited by unique populations of microorganisms, influenced by plant genotype and the…
Modulation of gene expression in plants with orthogonal regulatory systems (Nat. Chem. Biol.)
Plant Science Research WeeklySome of the most promising applications in synthetic biology need precise control of gene expression. For instance, metabolic engineering in plants requires the expression of enzyme-coding genes at a precise time, space, and quantity to ensure correct output. Recently, Belcher, Vuu, and colleagues engineered…
Role of two phosphatases in state transition of Chlamydomonas (Plant Physiol.)
Plant Science Research WeeklyPlants and green algae can rapidly adapt to changing light conditions. Depending on light availability or other metabolic needs, Light Harvesting Complexes (LHC) II can be reallocated to photosystem I (PSI) from photosystem II (PSII) and vice versa. This is known as state transition and is mediated by…
The biogenesis of CLEL peptides involves several processing events in consecutive compartments of the secretory pathway (eLIFE)
Plant Science Research WeeklySmall signaling peptides are cleaved from precursor proteins by the action of proteases and are also subject to other post-translational modifications. Subtilases (SBT) are mostly extracellular proteases, but SBT6.1 is membrane-localized at the Golgi and plasma membranes. Furthermore, it has been shown…
Systemic signaling during abiotic stress combination in plants (PNAS)
Plant Science Research WeeklyIn nature, plants face multiple environmental stresses simultaneously. Plant responses to combined stresses are often not merely the sum of responses to individual stresses; in the tissue that initially perceive stresses (local tissue), plants can integrate different stress signals to elicit unique responses.…
UDP-glucosyltransferase regulates grain size and abiotic stress tolerance associated with metabolic flux redirection in rice (Nature Comms.)
Plant Science Research WeeklyClimate change severely affects plant growth and jeopardizes yields of essential seed crops such as rice. Still, the mechanisms underlying the synergistic regulation of abiotic stress response and important agronomic traits remain poorly understood. Dong et al. cloned and characterized a major QTL in…
SMAX1-dependent seed germination bypasses GA signalling in Arabidopsis and Striga (Nature Plants)
Plant Science Research WeeklyStrigolactones (SL) are germination cues for parasitic plants, as their seeds will not germinate until they perceive SL exuded from the host plant. In contrast, gibberellins (GA) are the dominant germination hormone in non-parasitic plants; GA-mediated degradation of DELLA repressors permits germination.…
A single gene underlies the dynamic evolution of poplar sex determination (Nature Plants)
Plant Science Research WeeklyDioecy (male and female flowers residing on distinct individuals) has independently arisen several times in angiosperms, yet the genetic basis of dioecy remains obscure. Here, Müller et al. reveal a single gene that acts as a sex-determination switch throughout the Populus genus. A negative regulator…
Plant dispersal strategies of high tropical alpine communities across the Andes (J. Ecol.)
Plant Science Research WeeklySince dispersal is crucial for the assembly of plant communities, a better understanding of its relation to climate is needed to predict plant communities' responses to changes in the environment. However, this kind of association is still missing in tropical alpine ecosystems –one of the most vulnerable…
Plant Science Research Weekly: June 12th
Blog, WWR Full PostReview: Guard cell metabolism and stomatal function
Stomatal conductance, gs, is one of the most important and highly regulated plant processes. Lawson and Matthews review how guard cell metabolism, stomatal anatomy and patterning, and signals from the mesophyll affect gs which in turn affects plant…
Recognizing Plant Physiology authors: Junhua Kong
Plant Physiology, Plant Physiology: Author ProfilesJunhua Kong, co-first author of METHYLTRANSFERASE1 and ripening modulate vivipary during tomato fruit development
Current Position: Research Assistant, Institute of Botany, Chinese Academy of Sciences, Beijing, China
Education: PhD from University of Bordeaux, Bordeaux, France; MSc from Hangzhou…
Recognizing Plant Physiology authors: Weiwei Chen
Plant Physiology, Plant Physiology: Author ProfilesWeiwei Chen, co-first author of METHYLTRANSFERASE1 and ripening modulate vivipary during tomato fruit development
Current Position: Associate Professor, Research Centre for Plant RNA Signaling and Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, College…
Recognizing Plant Physiology authors: Mengqin Yao
Plant Physiology, Plant Physiology: Author ProfilesMengqin Yao, co-first author of METHYLTRANSFERASE1 and ripening modulate vivipary during tomato fruit development
Current Position: MSc student, Research Centre for Plant RNA Signaling and Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, College of…
Endosidin20: A Key to Unlock the Secrets of Cellulose Biosynthesis
Research, The Plant Cell, The Plant Cell: In BriefBy now, you would think we’d know everything about cellulose, given its status as the most abundant biopolymer on Earth and its simple chemical composition. Cellulose is composed of β-1,4-D-glucose units assembled into straight chain polymers. These rod-like molecules are packed into strong microfibrils…
Comparing genomes of diverse plants reveals new candidate genetic components for plant disease resistance
Research, The Plant Cell, The Plant Cell: In a NutshellBaggs et al. look for key immune genes bases on their presence/absence patterns in different plant species. The Plant Cell https://doi.org/10.1105/tpc.19.00903
by Erin Baggs, University of California, Berkeley, USA
Ruby O’Grady, The John Innes Centre and The Sainsbury Laboratory, Norwich, UK…
Breaking the Mold: Reduced Protein Storage in Brassica napus Seed Triggers Unexpected Structural Changes
Research, The Plant Cell, The Plant Cell: In BriefDuring development, seeds pack away large amounts of storage nutrients in the form of starch, proteins, and lipids (typically triacylglycerides), but the ratios of these storage products vary tremendously between seed types. Because of the obvious agricultural implications, researchers have long sought…
Recognizing Plant Physiology authors: Shinichiro Komaki
Plant Physiology, Plant Physiology: Author ProfilesShinichiro Komaki, first author of Functional analysis of the plant chromosomal passenger complex
Current Position: Assistant Professor, Division of Biological Science, NAIST, Japan
Education: Ph.D., Bioscience, NAIST, Japan
Non-scientific Interests: listening to music, finding clover mutants
Brief…
Recognizing Plant Physiology authors: Liza Esther Alexander
Plant Physiology, Plant Physiology: Author ProfilesLiza Esther Alexander, first author of Maize Glossy2 and Glossy2-like Genes Have Overlapping and Distinct Functions in Cuticular Lipid Deposition
Current Position: Bioscience Innovation Postdoctoral Fellow, Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University
Education:…
Sugar Is Sweeter: Plants Open Their “Mouths” for Glucose, Not Malate, In the Morning
Research, The Plant Cell, The Plant Cell: In BriefRegulation of stomatal opening and closing in plants in response to environmental cues continues to be well studied (García-León et al., 2019; Li et al., 2020), as it is important for balancing the intake of carbon dioxide for photosynthesis (PS) with the release of water during transpiration. But…
Review: Functions of anionic lipids in plants (Annu. Rev. Plant Biol.)
Plant Science Research WeeklyMoving materials within and out of cells requires that membranes carry identification labels, but when the membrane itself moves, that ID label must be updated. These requirements are met ingeniously by the anionic lipids, which are both a modifiable information system and simultaneously modify the physicochemical…
Review: Sequencing and analyzing the transcriptomes of a thousand plant species (Annu. Rev. Plant Biol.)
Plant Science Research WeeklyOver the past decade, Next Generation Sequencing (NGS) has been used for de novo assembly of crop genomes (i.e., tomato, potato) under the motto “If it tastes good, let’s sequence it”. By contrast, the One Thousand Plant (1KP) Initiative set out to obtain transcriptomic data of phylogenetically…
Multiple metabolic innovations and losses are associated with major transitions in land plant evolution (Curr. Biol.)
Plant Science Research WeeklyThe colonization of land by a single streptophyte algae lineage around 450 million years ago culminated in the evolution and radiation of all terrestrial flora, the embryophytes. Adapting and thriving in the land environment required many morphological and physiological innovations, as well as the acquisition…
Genomic evidence for convergent evolution of gene clusters for momilactone (PNAS)
Plant Science Research WeeklyPlants produce a rich diversity of chemical compounds. In fungi, the genes encoding specialized biosynthetic pathways are frequently arranged in contiguous loci forming biosynthetic gene clusters (BGC). In plants, BGCs are not common, however, some cases have been found in angiosperms. Among the known…
Repurposed genes and the evolution of plant carnivory (Curr. Biol.)
Plant Science Research WeeklyCarnivorous plants attract, trap, digest, and import nutrients from small animal prey, enabling these plants to thrive in nutrient-poor soil. Palfalvi et al. sequenced, annotated, and compared draft genomes from the family Droseraceae for the Venus flytrap (Dionaea muscipula), the waterwheel plant (Aldrovanda…
Dissecting the genome of star fruit (Averrhoa carambola L.) (Hort. Res.)
Plant Science Research WeeklyStarfruit is a sweet and sour fruit that has a shape of a five-point star. It belongs to the Oxalidaceae family and is a fruit of Averrhoa carambola, a species of tree native to tropical Southeast Asia. The fruit is consumed in many parts of the world and is known for its many economic, medicinal and…
Improvement of predictive ability in maize hybrids by including dominance effects and marker x environment models ($) (Crop Sci.)
Plant Science Research WeeklyHeterosis is phenomenon that occurs when crossbred individuals show qualities (such as such as size, growth rate, fertility, and yield) that are superior to those of both parents. In maize, heterosis can be explained in terms of hybrid vigor, and this has been well studied using traditional breeding.…
A gene knock-out that leads to seedless parthenocarpic fruits in Solanaceae plants ($) (PNAS)
Plant Science Research WeeklyParthenocarpy, or the ability to make fruit without fertilization, is desirable for many reasons including the opportunity to make seedless fruits and a greater resiliency in crop production in the face of climate change. Matsuo et al. identified a new gene involved in parthenocarpy, starting with a…
Water availability effects on germination, membrane stability and initial root growth of Agave lechuguilla and A. salmiana (Flora)
Plant Science Research WeeklyLow water availability limits seed germination in arid environments, such as the ones that Agave plants inhabit. As a result, vegetative propagation has been considered their most effective and successful method of reproduction. However, agaves produce several hundreds of seeds, and their natural populations…
Post germination seedling establishment by ABA in response to light (Plant J.)
Plant Science Research WeeklyAbscisic acid (ABA), is implicated in reversible inhibition of seed germination (emergence of radicle) and post-germination seedling establishment (formation of green open cotyledons) during unfavorable conditions. Yadukrishnan et al. analyzed the role of light in ABA- mediated inhibition of post germination…
PIN FORMED 2 modulates the transport of arsenite in Arabidopsis thaliana (Plant Comms.)
Plant Science Research WeeklyPIN FORMED (PIN) proteins are known for their directional auxin transport capacity. Ashraf et al. found that auxin transporter PINs have sequence similarity to bacterial arsenite transporter arsB, yeast Saccharomyces cerevisiae arsenite transporter SsAcr3, and arsenic hyperaccumulator fern Pteris vittata…
Measuring both microbial load and diversity with a single amplicon sequencing library (bioRxiv)
Plant Science Research WeeklyAmplicon sequencing of microbial DNA is a gold standard for analyzing the relative abundance of microbes in host-associated microbiomes. To gain more accurate insights into microbiome changes, it is crucial to know the absolute abundance of microbes, which can be analyzed by integrating relative abundance…
A chemical elicitor, 4- fluorophenoxyacetic acid suppresses insect pest populations and increases crop yields (PNAS)
Plant Science Research WeeklyPlant strengtheners, synthetic chemical elicitors, have been shown to enhance plant resistance against various insect pests without toxic effects on the environment, but evidence is lacking for a significant increase in crop growth and yield after using these elicitors. To address this, Wang et al. studied…
STRESS INDUCED FACTOR 2 regulates arabidopsis stomatal immunity through phosphorylation of the anion channel SLAC1 ($) (Plant Cell)
Plant Science Research WeeklyPlants detect microbes by pattern recognition receptors (PRRs) that sense common conserved structures called microbe-associated molecular patterns (MAMPs) and trigger the innate immunity responses. Chan et al. identified a new player in the Arabidopsis immune response known as STRESS INDUCED FACTOR 2…
Plant Science Research Weekly: June 5th
WWR Full PostReview: Functions of anionic lipids in plants
Moving materials within and out of cells requires that membranes carry identification labels, but when the membrane itself moves, that ID label must be updated. These requirements are met ingeniously by the anionic lipids, which are both a modifiable information…
Recognizing Plant Physiology authors: Nat Graham
Plant Physiology, Plant Physiology: Author ProfilesNat Graham, first author of Plant genome editing and the relevance of off-target changes
Current Position: Molecular Biology Scientist at Pairwise – Durham, North Carolina, USA
Education: Ph.D. in Biology, University of Missouri - Columbia
Non-scientific Interests: brewing beer, cooking, hiking
Brief…
Recognizing Plant Cell authors: Anindya Ganguly
The Plant Cell, The Plant Cell: Author ProfilesAnindya Ganguly, first author of FRA1 Kinesin Modulates the Lateral Stability of Cortical Microtubules Through Cellulose Synthase-Microtubule Uncoupling Protein
Current Position: Research Assistant Professor, Molecular Physiology and Biological Physics, University of Virginia, USA
Education: BS and…
Recognizing Plant Physiology authors: Chenyong Miao
Plant Physiology, Plant Physiology: Author Profiles
Chenyong Miao, first author of Increased power and accuracy of causal locus identification in time-series genome-wide association in sorghum
Current Position: PhD candidate in the Schnable lab at the University of Nebraska-Lincoln
Education:
Ph.D. in Agronomy (in progress ) at the University…
Recognizing Plant Cell authors: Sabine Brumm
The Plant Cell, The Plant Cell: Author ProfilesSabine Brumm, first author of Coordinated activation of ARF1 GTPases by ARF-GEF GNOM dimers is essential for vesicle trafficking in Arabidopsis
Current Position: Post-Doc, Sainsbury Laboratory University of Cambridge, Cambridge, UK
Education: Ph.D. from University of Tübingen, ZMBP, developmental…
Recognizing Plant Physiology authors: Matthew Neubauer
Plant Physiology, Plant Physiology: Author ProfilesMatthew Neubauer, first author of Loss of the Arabidopsis Acetyltransferase NAA50 Induces ER Stress and Immune Responses and Suppresses Growth
Current Position: Postdoctoral Researcher, Department of Plant and Microbial Biology, North Carolina State University
Education: B.S., Biology, Loyola University…
Recognizing Plant Cell authors: Van Cam Nguyen
The Plant Cell, The Plant Cell: Author ProfilesVan Cam Nguyen, co-first author of A Pair of Arabidopsis Diacylglycerol Kinases Essential for Gametogenesis and ER Phospholipid Metabolism in Leaves and Flowers
Current Position: Ph.D. candidate in the Graduate Institute of Biotechnology at National Chung Hsing University (NCHU)
Education: M.S.…
Recognizing Plant Cell authors: Artik Elisa Angkawijaya
The Plant Cell, The Plant Cell: Author ProfilesArtik Elisa Angkawijaya, co-first author of A Pair of Arabidopsis Diacylglycerol Kinases Essential for Gametogenesis and ER Phospholipid Metabolism in Leaves and Flowers
Current Position: Assistant Professor, Graduate Institute of Applied Science and Technology, National Taiwan University of Science…
Recognizing Plant Physiology authors: Laura Armbruster
Plant Physiology, Plant Physiology: Author ProfilesLaura Armbruster, first author of NAA50 is an enzymatically active Nα-acetyltransferase that is crucial for development and regulation of stress responses
Current Position: PhD Candidate, Centre for Organismal Studies Heidelberg, Heidelberg University, Germany
Education: M.Sc. in Molecular Biotechnology…
Recognizing Plant Physiology authors: Maxwell Ware
Plant Physiology, Plant Physiology: Author ProfilesMaxwell Ware, first author of A Chlorophyte alga utilizes alternative electron transport for primary photoprotection
Current position: Post-doctoral fellow at Colorado State University
Education: M.Sci in Biological Sciences, University of Birmingham (UK); PhD in Biological and Chemical Sciences,…
Chlamydomonas and Vitamin B12
Plant Physiology, Plant Physiology: On The InsideNutrient amendment experiments suggest that B12 limits phytoplankton growth in many aquatic ecosystems. Eukaryotic algae cannot synthesize B12 and must instead obtain it from certain B12-producing prokaryotes. In many algae, B12 is required as a cofactor for the B12-dependent Met synthase enzyme (METH),…
Small Secreted Peptides of a Model Legume: a Database
Plant Physiology, Plant Physiology: On The InsidePlant small secreted peptides (SSPs) have emerged as an important class of regulatory molecules involved in plant growth, development, plant-microbe interactions, and stress tolerance. SSPs are typically encoded within preproteins of 100–250 amino acids, that are subsequently processed into shorter…
Recognizing Plant Cell authors: Joseph Gage
The Plant Cell, The Plant Cell: Author ProfilesJoseph Gage, first author of Ten Years of the maize Nested Association Mapping Population: Impact, Limitations, and Future Directions
Current Position: NSF Postdoctoral Fellow in the Buckler Lab at Cornell University
Education: B.S. in Plant Sciences and Communications from Cornell University; M.S.…
Cineole Synthesis in Kiwifruit
Plant Physiology, Plant Physiology: On The InsideOver 80 volatile organic compounds (VOCs) have been described in ripe kiwifruit (Actinidia spp.), with the most important odor-active compounds typically being straight-chain esters and C6 aldehydes and alcohols. Another odorant proposed to be important in the flavor of ‘Hort16A’, one of three…
Recognizing Plant Cell authors: Erin Louise Baggs
The Plant Cell, The Plant Cell: Author ProfilesErin Louise Baggs, first author of Convergent loss of an EDS1/PAD4 signaling pathway in several plant lineages reveals co-evolved components of plant immunity and drought response
Current Position: PhD Candidate, Krasileva Lab, Department of Plant and Microbial Biology, University of California, Berkeley
Education:…
Recognizing Plant Physiology authors: Chao Zhang
Plant Physiology, Plant Physiology: Author ProfilesChao Zhang, first author of OsATM safeguards accurate repair of meiotic double-strand breaks in rice
Current Position: Lecturer, College of Agriculture, Yangzhou University
Education: Ph.D. in Genetics, Institute of Genetics and Developmental Biology, University of Chinese Academy of Sciences
Non-scientific…
New Insights into Tomato Ripening
Plant Physiology, Plant Physiology: On The InsideFruit ripening results in changes in pigmentation, enhanced aromas and flavors, and flesh softening. The ripening process involves massive changes in gene expression patterns. RIPENING INHIBITOR (RIN) is a transcription factor that plays a major role in regulating fruit ripening in tomato (Solanum lycopersicum).…
Recognizing Plant Cell authors: Tobias Jores
The Plant Cell, The Plant Cell: Author ProfilesTobias Jores, first author of Identification of plant enhancers and their constituent elements by STARR-seq in tobacco leaves
Current Position: Postdoctoral scholar, Department of Genome Sciences, University of Washington, Seattle, USA
Education: PhD in Biochemistry, Interfaculty Institute of Biochemistry,…
Recognizing Plant Physiology authors: Ruohan Xie
Plant Physiology, Plant Physiology: Author ProfilesRuohan Xie, first author of Seasonal zinc storage and a strategy for its use in buds of fruit trees
Current Position: PhD student, College of Environmental & Resource Science, Zhejiang University, China
Education: Ph.D. in College of Environmental & Resource Science of Zhejiang University,…
Hydrogen Sulfide and Cadmium Stress
Plant Physiology, Plant Physiology: On The InsideCadmium (Cd) negatively impacts plant yield by causing growth inhibition, chlorosis, or even the death of entire plants. Cd interferes with the uptake and translocation of other ions, damages protein and DNA/RNA functions, and increases the accumulation of reactive oxygen species (ROS). An increasing…
Recognizing Plant Cell authors: Aashima Khosla
The Plant Cell, The Plant Cell: Author ProfilesAashima Khosla, first author of Structure-function analysis of SMAX1 reveals domains that mediate its karrikin-induced proteolysis and interaction with the receptor KAI2
Current Position: Postdoctoral Research Fellow, Department of Botany and Plant Sciences, University of California, Riverside, USA
Education:…
Recognizing Plant Physiology authors: Andrew Guzman
Plant Physiology, Plant Physiology: Author ProfilesAndrew Guzman, first author of Tomato Atypical Receptor Kinase1 is involved in the regulation of pre-invasion defense
Current Position: Graduate Student in Dr. Mary Beth Mudgett’s laboratory at Stanford University
Education:
PhD Candidate, Department of Microbiology & Immunology, Stanford…
Calcium Signaling and Sugar Homeostasis
Plant Physiology, Plant Physiology: On The InsideThe calcium sensor Calcineurin B-like protein (CBL) participates in calcium signal transduction by interacting with CBL-interacting protein kinase (CIPK). CBL-CIPK pathways have been reported to participate in a range of biological processes. In Arabidopsis (Arabidopsis thaliana), there are 10 CBLs…
Cellular plasticity in protein re-balancing
Research, The Plant Cell, The Plant Cell: In a NutshellRolletschek et al. examine the role of cellular plasticity in oil-protein balancing.
Plant Cell https://doi.org/10.1105/tpc.19.00879
By Hardy Rolletschek and Ljudmilla Borisjuk
Leibniz Inst Plant Genet & Crop Plant Res (IPK)
Gatersleben, Germany
Background: Seeds of some crops like…
Recognizing Plant Physiology authors: Sam Wilson
Plant Physiology, Plant Physiology: Author ProfilesSam Wilson, first author of Rethinking the influence of chloroplast movements on non-photochemical quenching and photoprotection
Current Position: PhD student, Department of Biochemistry, School of Biological and Chemical Sciences, Queen Mary University of London
Education: BSc Biochemistry, Queen…
Recognizing Plant Direct authors: Amy Klocko
Plant Direct, Plant Direct: Author ProfilesAmy Klocko, first author of RNAi of AGAMOUS genes in sweetgum alters reproductive organ identity and decreases fruit persistence
Current Position: Assistant Professor of Plant Genetics, Department of Biology, University of Colorado Colorado Springs, Colorado Springs, Colorado, USA
Education: Bachelors…
Recognizing Plant Cell authors: Veder Garcia
The Plant Cell, The Plant Cell: Author ProfilesVeder Garcia, first author of TRIPP is a Plant-specific Component of the Arabidopsis TRAPPII Membrane Trafficking Complex with Important Roles in Plant Development
Current Position: Scientist, Seer Inc. Redwood City, California, USA
Education:
BS Biological Sciences with Honors in Cell Biology…
MYB30 Regulates Photomorphogenesis via Interactions with Active Phytochromes and PIFs
Research, The Plant Cell, The Plant Cell: In BriefMYB proteins are a group of transcription factors that are highly conserved in all vertebrates and were first implicated in avian myeloblastosis (leukemia). Subsequently, they were shown to be cellular proto-oncogenes that regulate production of blood cells in animals. MYB proteins contain a DNA-binding…
Recognizing Plant Physiology authors: Zhongtao Jia
Plant Physiology, Plant Physiology: Author ProfilesZhongtao Jia, first author of The root foraging response under low nitrogen depends on DWARF1-mediated brassinosteroid biosynthesis
Current position: Postdoctoral Researcher, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
Education: PhD in Molecular Plant…
Guard cell starch-derived glucose drives fast stomatal opening kinetics
Research, The Plant Cell, The Plant Cell: In a NutshellFlütsch et al. examine how starch degradation and light-regulated membrane transport control stomatal opening kinetics.
Plant Cell https://doi.org/10.1105/tpc.18.00802
By Sabrina Flütsch and Diana Santelia
Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
Background: Stomatal…
Ligand-induced monoubiquitination of BIK1 regulates plant immunity (Nature)
Plant Science Research Weekly
The plant immune system has been a keenly researched area in plant sciences in the past decade. Elicitors present in microbes are compounds that induce response from plants when under attack. These elicitors are conserved in many pathogens and are called microbe associated molecular patterns (MAMPs).…
Review: The bHLH network underlying plant shade-avoidance (Physiol. Plant.)
Plant Science Research WeeklyShade avoidance is a complex phenomenon in which plants avoid shade by altering their developmental program in various ways including early flowering, hypocotyl elongation, and more. Many photoreceptors and transcription factors (TFs) are involved in regulating shade avoidance, including the bHLH (basic…
Nutrient dose-responsive transcriptome changes driven by Michaelis–Menten kinetics underlie plant growth rates (PNAS)
Plant Science Research WeeklyPlants can increase their growth and biomass proportionately to an increase in nutrient dose and, conversely, their growth is limited by limiting nutrients. In this study, Swift et al. explored the molecular underpinnings of the nutrient dose-response phenomenon. The authors first show that nitrogen-dose…
How do auxin temporal dynamics regulate patterning? (eLIFE)
Plant Science Research WeeklyAuxin forms spatial gradients that are implicated in organ morphogenesis. However, it is not known how temporal auxin gradients are integrated with the spatial information. In this paper, Galvan-Ampudia, Cerutti et al., showed using a ratiometric quantitative auxin reporter (quantitative DII-VENUS) that…
Design principles of a minimal auxin response system (Nature Plants)
Plant Science Research WeeklyAuxin controls virtually all facets of growth and development. This plant hormone is sensed by TIR1/AFB F-box receptors which promote ubiquitin-mediated degradation of AUX/IAA transcriptional repressors, releasing ARF transcription factors from inhibition. Phylogenetic analyses divide the ARF family…
Plant synthetic promoters to fine tune expression of engineered genes (bioRxiv)
Plant Science Research WeeklySynthetic genetic circuits allow the reconstruction of metabolic pathways in plant systems for production of many natural products including pharmaceuticals. A challenge in genetic engineering these circuits is precisely and predictably regulating gene expression, especially when genes may be desired…
Genomic history and ecology of the geographic spread of rice (Nature Plants)
Plant Science Research WeeklyOriginating in China’s Yangtze Valley ~9,000 years ago, rice (Oryza sativa) is a staple food for over half of the world’s population. While rice domestication has been well-researched, studies addressing the species' diversification and spread post-domestication are lacking. Here, Gutaker et al. tell…
ARGONAUTE2 enhances grain length and salt tolerance by activating BIG GRAIN3 to modulate cytokinin distribution in rice (Plant Cell)
Plant Science Research WeeklyIs it possible to simultaneously increase two incompatible features like grain yield and stress tolerance? Yin et al. suggest that optimizing cytokinin distribution in plant tissues is a promising strategy for that. ARGONAUTE2 (AGO2) and BIG GRAIN3 (BG3) genes work together promoting at the same time…
How does fire affect germination of grasses in the Cerrado? ($) (Seed Sci. Research)
Plant Science Research WeeklyFire shapes tropical savannas through direct (i.e., heat and smoke) and indirect (i.e., opening gaps) effects on the vegetation. However, its effects on seeds from neotropical grasses have seldom been addressed. In this paper, Dariel and Fidelis assessed the longevity and the impact of fluctuating temperatures…
Shedding light on plant immunity: Light-regulated defense against P. infestans (PNAS)
Plant Science Research WeeklyWhile infection by pathogens and the reciprocal immune responses are well studied in plants, the influence of other abiotic factors on these processes is not very clear. In an attempt to understand the role of light on plant defense, Gao and colleagues have shown that the AVRvnt1 effector protein secreted…
Hungry bumblebees bite plants to accelerate flowering (Science)
Plant Science Research WeeklyBumblebees receive nutrition from flowers in exchange for aiding plant fertilization. This mutualistic relationship relies on timely availability of flowers for the pollinators, but annual variation in flowering time in changing environments can pose a challenge. Pashalidou and Lambert et al. now found…
Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat (Science)
Plant Science Research WeeklyMycotoxins are fungal toxins with harmful health effects on humans and other animals. Fusarium head blight is a fungal disease of wheat inflorescences that can contaminate the grain and harm its consumers. Previously, Fhb7 was identified in the wheat relative Thinopyrum elongatum as a quantitative trait…
Plant Science Research Weekly: May 29th
WWR Full PostReview: The bHLH network underlying plant shade-avoidance
Shade avoidance is a complex phenomenon in which plants avoid shade by altering their developmental program in various ways including early flowering, hypocotyl elongation, and more. Many photoreceptors and transcription factors (TFs) are involved…
The Butterfly Effect: Natural Variation of a Chloroplast tRNA-Modifying Enzyme Leads to Pleiotropic Developmental Defects in Rice
Research, The Plant Cell, The Plant Cell: In BriefTranslation of RNA information into protein is a fundamental process ensuring the production of functional proteins in cells. Transfer RNA (tRNA) is a vital component of the translation machinery as it delivers the correct amino acids to the elongating peptide chain based on codon-anticodon recognition.…
MYB30 Promotes PIF4 and PIF5 Accumulation in the Light
Research, The Plant Cell, The Plant Cell: In a NutshellYan et al. discovered that MYB30, an R2R3-MYB family transcription factor, is a negative regulator of Arabidopsis photomorphogenic development and promotes PIF4 and PIF5 accumulation under prolonged red light irradiation. Plant Cell https://doi.org/10.1105/tpc.19.00645
By Yan Yan and Jigang Li, China…
Review: Devastating intimacy: the cell biology of plant–Phytophthora interactions (New Phytol)
Plant Science Research WeeklyPhytophthora are plant-destroying oomycetes. Within this genus are several infamous disease-causing agents: P. infestans of the potato late-blight fame, P. sojae of soybean root rot, P. ramorum of sudden oak death, and many other lesser-known species. This fine new review by Boevink et al. explores the…
Review: Enzymes as parts in need of replacement – and how to extend their working life (Trends Plant Sci)
Plant Science Research WeeklyThe ability of biological systems to self-repair is a huge motivator in all sorts of synthetic biology projects. Taking this cell-as-factory to the next step comes the question of how often do the parts need replacing? Tivendale et al. address this through a discussion of Catalytic Cycles until Replacement…
Review: Ten years of the maize nested association mapping population: Impact, limitations, and future directions (Plant Cell)
Plant Science Research WeeklyLinking phenotype to genotype is a major obstacle in plant biology, and conventional approaches (linkage analysis, association mapping) have limitations. Here Gage et al. review the past, present, and future impacts of a maize Nested Association Mapping (NAM) population developed throughout the 2000s.…
How far does stomatal activator and inhibitor signaling work in the plant epidermis? (bioRxiv)
Plant Science Research WeeklyStomata are the pores on the plant surface surrounded by a pair of guard cells that control gaseous exchange and water loss. Among the many genes involved in stomatal patterning and development, EPIDERMAL PATTERNING FACTOR 1 (EPF1) and STOMAGEN encode signaling peptides and acts as negative (inhibitor)…
Advanced vascular function discovered in a widespread moss (Nature Plants)
Plant Science Research WeeklyIn order to grow upwards into the dry atmosphere, plants need to keep their elevated tissues hydrated and functional. In vascular plants this is achieved by a lignified water transport system in conjunction with stomatal regulation of gas exchange and the encasement of photosynthetic tissues in an impermeable…
GOLVEN peptide signaling through RGI receptors and MPK6 restricts asymmetric cell division during root initiation (Nature Plants)
Plant Science Research WeeklyLateral root starts development starts with an asymmetric cell division in the founder cell. In this study, Fernandez et al. explored the role of peptide signaling this process. The authors started with the previous finding that GOLVEN peptides are involved in lateral root initiation, as overexpression…
Melatonin represses oil and anthocyanin accumulation in seeds (Plant Physiol.)
Plant Science Research WeeklySeed oils and anthocyanins play several roles in plant physiology and are promising substances for crop engineering given their benefits for human health. Recent studies proposed that melatonin –a potent antioxidant present in all plant species– regulates the deposition of these metabolites in seeds,…
Accumulation of high value bioproducts in planta can improve the economics of advanced biofuels (PNAS)
Plant Science Research WeeklyBiofuels can be obtained from bioenergy crops such as sorghum, maize and sugarcane. However, the production of bioethanol is still more expensive than that of petroleum. Given the importance of replacing conventional fossil fuels with renewable liquid fuels, the biorefinery system should be improved…
Rhizosphere microbiome protects plants from a pathogen via iron competition (Nature Microbiol)
Plant Science Research WeeklyIron is an essential element for most living organisms, including plant-associated bacteria. As iron is insoluble in most soils, many soil-borne bacteria scavenge iron using siderophores, a chemically diverse group of secondary metabolites with a high affinity for iron. Siderophores are known to drive…
Fungal antagonism of Arabidopsis oomycete infection requires a previously uncharacterized secreted hydrolase (bioRxiv)
Plant Science Research WeeklyAntagonist interactions between microbes of the phyllosphere stabilize the microbiome and some “hub” organisms can exert strong effects on community structure. The yeast family Ustilaginales contains several apathogenic species that are microbial antagonists that can inhibit infection from diverse…
Plant Science Research Weekly: May 22nd
Blog, WWR Full PostReview: Devastating intimacy: the cell biology of plant–Phytophthora interactions
Phytophthora are plant-destroying oomycetes. Within this genus are several infamous disease-causing agents: P. infestans of the potato late-blight fame, P. sojae of soybean root rot, P. ramorum of sudden oak death,…
Silencing Immunity: miR159 Suppresses Pathogen Responses in Tobacco
Plant Physiology, Plant Physiology: News and Views, ResearchMichael J. Skelly
[email protected]
To ensure optimal growth and development, plants must precisely control gene expression networks in a tissue-specific manner. MicroRNAs (miRNAs) are a class of small non-coding RNA molecules that post-transcriptionally silence genes by binding to complementary…
Twist of Fate: Ribosomal Stress Reprograms Root Hair Pattering
Research, The Plant Cell, The Plant Cell: In BriefThe root epidermis presents an elegant model to study cell differentiation. Based on positional cues, Arabidopsis distinguishes two epidermal cell types. Cells in the H position, adjacent to the junction of two cortex cells, have the capacity of developing root hair identity, whereas the non-hair cells…
Photosynthesis in the womb: does embryonic photosynthesis give seedlings a head start?
Plant Physiology, Plant Physiology: News and Views, ResearchIt might be a little known fact, even among plant biologists, that in embryos of many species of the Fabaceae, most oilseed plants and Arabidopsis thaliana embryos can photosynthesize within the seed (Tejos et al., 2010). We do not know why plant embryos have this capacity, since embryos are surrounded…
Shaping the Plant Cell Wall: Molecular Characteristics of XOAT1 in Polysaccharide Acetylation
Research, The Plant Cell, The Plant Cell: In BriefPlant cell walls provide mechanical support to plant cells, determine their size and shape, and influence plant development and stress responses. The plant cell wall is composed mainly of polysaccharides, including cellulose, hemicellulose and pectins, with smaller amounts of phenolic polymers and proteins…
Recognizing Plant Physiology authors: Yu Zhang
Plant Physiology, Plant Physiology: Author ProfilesYu Zhang, first author of Astaxanthin is ketolated from zeaxanthin independent of fatty acid synthesis in Chromochloris zofingiensis
Current Position: PhD candidate, Laboratory for Algae Biotechnology & Innovation, Peking University
Education: PhD candidate in Bioengineering (Peking University);…
Recognizing Plant Cell authors: Yan Yan
The Plant Cell, The Plant Cell: Author ProfilesYan Yan, first author of MYB30 Is a Key Negative Regulator of Arabidopsis Photomorphogenic Development that Promotes PIF4 and PIF5 Protein Accumulation in the Light
Current Position: Post-doc, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
Education:…
Control of Arabidopsis Hypocotyl Growth by Strigolactone and Karrikin Signaling
Research, The Plant Cell, The Plant Cell: In a NutshellDescriptive paragraph. Plant Cell https://doi.org/10.1105/tpc.20.00140
By Bing Wang and Qian Xu, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences.
Background: Strigolactones (SLs) are carotenoid-derived plant hormones that control many aspects of plant development, such…
Glyphosate Resistance Decoded: the reference sequence of the extrachromosomal DNA Replicon in Amaranth
Research, The Plant Cell, The Plant Cell: In BriefDecades of research in evolutionary genetics has shown that genomic plasticity, in particular variation in gene copy number, is a favored mechanism to provide rapid adaptation to adverse environmental conditions through increase in gene dosage. Gene amplification has been observed across kingdoms and…
XOAT1- At the heart of plant polysaccharide acetylation
Research, The Plant Cell, The Plant Cell: In a NutshellLunin et al. describe a structural and biochemical analysis of the enzyme XOAT1, responsible for the acetylation of the cell wall component xylan, with potential applications in cell wall modification for better biomass valorization. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00028
By Vivek…
Review: Evo-physio: on stress responses and the earliest land plants (J. Exp. Bot.)
Plant Science Research WeeklyStreptophytes are a grade of mostly freshwater algae that transitioned into land, a singularity that in turn gave rise to all present terrestrial flora. This passage along the hydrological gradient that culminated in land habitation required key adaptations to overcome previously unencountered terrestrial…
“Order by disorder”- intrinsically disordered proteins (Plant Physiol.)
Plant Science Research WeeklyIntrinsically disordered proteins (IDP) have repetitive protein sequences but lack a defined 3D structure and are deployed to do some challenging functions that a protein with a defined 3D structure cannot perform. One such IDP, Oryza sativa REPETITIVE PROLINE-RICH PROTEIN (OsRePRP) is involved in inhibiting…
MYB30 negatively regulates photomorphogenesis by interacting with PIFs and phytochromes in Arabidopsis (Plant Cell)
Plant Science Research WeeklyPhotomorphogenesis is the growth and development of plants in response to light. The phytochrome family of photoreceptors absorbs red and far-red light, and in Arabidopsis the most abundant phytochromes are phyA and phyB. PHYTOCHROME-INTERACTING FACTORS (PIFs) repress photomorphogenesis, and under red…
Endosidin20 targets the cellulose synthase catalytic domain to inhibit cellulose biosynthesis (Plant Cell)
Plant Science Research WeeklyCellulose is an indispensable component of plant cell wall formation. Cellulose is synthesized at the plasma membrane by a cellulose synthase complex (CSC) made up of at least 18 monomeric cellulose synthases (CESAs). In this study, Huang et al. used a chemical genetic approach to explore the structure…
Mutations PETALOSA cause a dominant double-flower phenotype (J. Exp. Bot.)
Plant Science Research WeeklyFlower development has always been a fascinating field of research in plant biology. While molecular studies in the past focused on regulatory genes involved in the formation of floral organs in model species, current investigations are addressing the genetic determinants underlying the huge variety…
Hydrogen mediates tolerance to cadmium-induced root toxicity (Plant Physiol.)
Plant Science Research WeeklyHeavy metals are a potential threat to human health, especially in areas with high industrial activity where the metals leach in the soil to contaminate underground water. These metals are a threat to plants too, resulting in stunted growth and their eventual death. Wu et al. carried out a mechanistic…
A moonlighting kinase induces immune responses in rice and Arabidopsis ($) (Plant Physiol.)
Plant Science Research WeeklyBacterial infections are a serious issue for crop plants and it is thus imperative to understand the mechanisms employed by plants to develop resistance against pathogens. Malukani et al. have identified a receptor kinase in rice, WALL-ASSOCIATED KINASE-LIKE 21 (OsWAKL21.2) that perceives pathogen-induced…
Mechanistic insights into host perception by a fungal pathogen (PNAS)
Plant Science Research WeeklyHost perception is crucial for soil-borne microbes to successfully colonize plant roots. Ding et al. conducted transcriptome analysis of the fungal pathogen Fusarium graminearum (Fg) in the presence of its host plant Brachypodium distachyon (Bd), either without direct contact (precontact) or during colonization.…
Master regulator of gene expression in plant defense upregulates its own transcription (Plant Physiol.)
Plant Science Research WeeklyNPR1 (NONEXPRESSER OF PR GENES1) is a master regulator that controls expression of over 2000 genes during plant defense. NPR1 interacts with transcription factors to activate expression of defense genes, but the mechanism is poorly understood. Chen et al. determined that in the presence of salicylic…
The negative effect of a vertically transmitted fungal endophyte on seed longevity is stronger than that of ozone transgenerational effect ($) (Environ. Exp. Bot.)
Plant Science Research WeeklyGlobal environmental change brings new challenges to plants at different levels, including seed development and persistence. For example, the increasing ground-levels of ozone (O3) can affect seed viability, as a result of changes in the mother plant antioxidant machinery. These responses might depend…
Plant Science Research Weekly: May 15th
WWR Full PostReview: Evo-physio: on stress responses and the earliest land plants
Streptophytes are a grade of mostly freshwater algae that transitioned into land, a singularity that in turn gave rise to all present terrestrial flora. This passage along the hydrological gradient that culminated in land habitation…
Water Pass: the aquaporin ZmPIP2:5 contributes to water transport at the gatekeeper cells
Plant Physiology, Plant Physiology: News and Views, ResearchMagdalena M. Julkowska, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia, ORCID: 0000-0002-4259-8296
[email protected]
Water transport is essential for many physiological processes in vascular plants. One of the forces driving water transport across roots…
Molecular Snapshots of the AKT1-CIPK23 Complex Involved in K+ Uptake
Plant Physiology, Plant Physiology: News and Views, ResearchDhineshkumar Thiruppathi 1,2
ORCID ID: 0000-0002-2018-3356
Donald Danforth Plant Science Center,
Saint Louis, Missouri 63132
1Lead author
2Author for contact: [email protected]
Potassium (K+) is the most abundant intracellular cation in all living organisms…
All Together Now: Phylotranscriptomics Reveals Core Responses to Fungal Infection Across the Pentapetalae
Research, The Plant Cell, The Plant Cell: In BriefOver 450 million years of land plant evolution has led to the acquisition of diverse and often overlapping sets of defense responses that limit pathogen infection. Decades of research has uncovered canonical immune pathways that provide resistance to specialist (hemi)-biotrophic pathogens relying on…
Recognizing Plant Physiology authors: Sheng Huang
Plant Physiology, Plant Physiology: Author ProfilesSheng Huang, first author of The ZIP transporter family member OsZIP9 contributes to root Zn uptake in rice under Zn-limited conditions
Current Position:Ph.D. student at Institute of Plant Science and Resources, Okayama University, Japan
Education: 2017-present, Ph.D. student in Institute of Plant…
A New Plant Component of the Conserved Machinery for Cellular Trafficking
Research, The Plant Cell, The Plant Cell: In a NutshellGarcia et al. discover a plant-specific component of TRAPP membrane trafficking complexes with important roles in plant development. Plant Cell https://doi.org/10.1105/tpc.20.00044.
By Veder Garcia and Zhi-Yong Wang
Department of Plant Biology, Carnegie Institution for Science, Stanford, CA
Background:…
Recognizing Plant Physiology authors: Lucia Montini
Plant Physiology, Plant Physiology: Author ProfilesLucia Montini, first author of Matrix-assisted laser desorption/ionization-mass spectrometry imaging of metabolites during sorghum germination
Current Position: Researcher at M4I Institute, Division of Imaging Mass Spectrometry, University of Maastricht
Education: MSc in Pharmaceutical Chemistry,…
Recognizing Plant Physiology authors: Bryan Leong
Plant Physiology, Plant Physiology: Author ProfilesBryan Leong, first author of Specialized metabolism in a non-model nightshade: trichome acylinositol biosynthesis
Current position: Post-doctoral associate in Biochemistry and Molecular Biology in Last lab at Michigan State University
Education: Ph.D. in Plant Biology, Michigan State University
Non-scientific…
A Nod to Their Ancestors: Mutation of MtNOOT1 Highlights Conserved Nodule Development
Research, The Plant Cell, The Plant Cell: In BriefNitrogen is an essential component of amino acids, nucleic acids, and even chlorophyll. Plants cannot grow without it. However, acquiring nitrogen is difficult as plants cannot use the most common form, atmospheric nitrogen (N2). To solve this, a select group of flowering plants have evolved to harness…
Plants increase photosynthesis efficiency by lowering the proton gradient across the thylakoid membrane
Plant Physiology, Plant Physiology: News and Views, ResearchAuthor: Stefanie Wege
[email protected]
ORCID: 0000-0002-7232-5889
Affiliation: ARC Centre of Excellence in Plant Energy Biology, PRC, School of Agriculture,
Food and Wine, Waite Research Institute, University of Adelaide, Waite Campus, Glen
Osmond 5064, South Australia, Australia
In…
Recognizing Plant Physiology authors: Ning Zhang
Plant Physiology, Plant Physiology: Author ProfilesNing Zhang, first author of Tomato wall-associated kinase SlWak1 depends on Fls2/Fls3 to promote apoplastic immune responses to Pseudomonas syringae
Current Position: Postdoctoral Associate, Boyce Thompson Institute for Plant Research, Ithaca, NY, USA
Education: PhD in Horticulture and Crop Science…
Formation of xylem vessels: Role of a WRKY transcription factor
Research, The Plant Cell, The Plant Cell: In a NutshellGe et al explore the function of a transcription factor that functions upstream of a master regulator of tracheary element differentiation. Plant Cell https://doi.org/10.1105/tpc.19.00689
By Shating Ge1, Juan Xu2, and Shuqun Zhang3
1 College of Plant Protection, Nanjing Agricultural University,…
Recognizing Plant Cell authors: Hardy Rolletschek
The Plant Cell, The Plant Cell: Author ProfilesHardy Rolletschek, first author of Cellular plasticity in response to suppression of storage proteins in the Brassica napus embryo
Current Position: Project leader at the Institute of Plant Genetics and Crop Plant Research, Research group “Assimilate Allocation and NMR”, Department of Molecular…
Recognizing Plant Physiology authors: Titouan Bonnot
Plant Physiology, Plant Physiology: Author ProfilesTitouan Bonnot, first author of Omics Data Reveal Putative Regulators of Einkorn Grain Protein Composition under Sulfur deficiency
Current Position: Post-doctoral research associate in the laboratory of Dr. Dawn Nagel at the University of California, Riverside (UCR), Department of Botany and Plant Sciences
Education:…
Recognizing Plant Direct authors: Kaori Yoneyama
Plant Direct, Plant Direct: Author ProfilesKaori Yoneyama, first author of Hydroxyl carlactone derivatives are predominant strigolactones in Arabidopsis
Current Position: Assistant Professor, Ehime University
Education: BS & MS, Utsunomiya University; PhD, Tokyo University of Agriculture and Technology
Non-scientific Interests: watching children,…
When Less is More: GSK2-OML4 Module Negatively Regulates Grain Size in Rice
Research, The Plant Cell, The Plant Cell: In BriefSeed size is a major component of seed yield. Unveiling the control of seed size provides a theoretical foundation for developing new strategies to boost crop production in the context of global food security. How plants determine their seed size is also a fascinating question in developmental biology.…
Recognizing Plant Cell authors: Qian Xu
The Plant Cell, The Plant Cell: Author ProfilesQian Xu, co-first author of Strigolactone and Karrikin Signaling Pathways Elicit Ubiquitination and Proteolysis of SMXL2 to Regulate Hypocotyl Elongation in Arabidopsis thaliana
Current Position: Currently unemployed
Education: PhD in Genetics at the Institute of Genetics and Developmental Biology,…
Recognizing Plant Cell authors: Lei Wang
The Plant Cell, The Plant Cell: Author ProfilesLei Wang, co-first author of Strigolactone and Karrikin Signaling Pathways Elicit Ubiquitination and Proteolysis of SMXL2 to Regulate Hypocotyl Elongation in Arabidopsis thaliana
Current Position: Post doctor, Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Education:…
Stop the FUSS: BPCs restrict FUSCA3 transcription to promote ovule and seed development
Research, The Plant Cell, The Plant Cell: In BriefTightly controlled genetic programs regulate developmental phase transitions within distinct tissues and cells. This is especially true for the vegetative-to-reproductive and reproductive-to-seed developmental phase changes that ensure the production of gametes capable of generating viable seed upon…
Recognizing Plant Direct authors: Craig Schenck
Plant Direct, Plant Direct: Author ProfilesCraig Schenck, first author of Role of Cytosolic, Tyrosine-Insensitive Prephenate Dehydrogenase in Medicago truncatula
Current Position: NSF Postdoctoral Research Fellow
Education: B.S. Plant Biology, Ohio, University; M.S. Molecular Biology, Ohio, University; Ph.D. Botany, University of Wisconsin-Madison
Non-scientific…
A GDSL lipase is required for anther and pollen development
Plant Physiology, Plant Physiology: News and Views, ResearchDepartment of Plant Pathology, Kansas State University, 1712 Claflin Road, Throckmorton Hall, Manhattan, KS, 66506, USA
[email protected]
Male fertility in angiosperms requires specific spatiotemporal gene expression patterns and cellular differentiation during male reproductive development (Wilson…
A Catalytic Inhibitor of Cellulose Biosynthesis in the Toolbox
Research, The Plant Cell, The Plant Cell: In a NutshellHuang et al. identify a new cellulose synthase inhibitor. Plant Cell https://doi.org/10.1105/tpc.20.00202.
By Lei Huang and Chunhua Zhang
Background: Cellulose is a polymer of b-1,4-D-glucose that serves as an essential source of everyday objects such as cloth, paper, and biofuel. Plant cellulose…
Recognizing Plant Physiology authors: An Quoc Pham
Plant Physiology, Plant Physiology: Author ProfilesAn Quoc Pham, first author of Arabidopsis Lectin Receptor Kinase P2K2 is a second plant receptor for extracellular ATP and contributes to innate immunity
Current posotion: Post-Doctoral Research Assistant, University of Missouri – Columbia, Columbia, MO, USA
Education: PhD in plant Sciences, University…
Recognizing Plant Cell authors: Markus Alahuhta
The Plant Cell, The Plant Cell: Author ProfilesMarkus Alahuhta, co-first author of Molecular mechanism of polysaccharide acetylation by the Arabidopsis xylan O-acetyltransferase XOAT1
Current Position: Research Scientist, National Renewable Energy Laboratory
Education: Ph.D., Biochemistry, University of Oulu, Finland
Non-scientific Interests:…
Recognizing Plant Cell authors: Vivek Bharadwaj
The Plant Cell, The Plant Cell: Author ProfilesVivek Bharadwaj, co-first author of Molecular mechanism of polysaccharide acetylation by the Arabidopsis xylan O-acetyltransferase XOAT1
Current Position: Staff Scientist at National Renewable Energy Laboratory (NREL) in Golden, Colorado
Education: PhD Chemical Engineering
Non-scientific Interests:…
Recognizing Plant Cell authors: Hsin-Tzu Wang
The Plant Cell, The Plant Cell: Author ProfilesHsin-Tzu Wang, co-first author of Molecular mechanism of polysaccharide acetylation by the Arabidopsis xylan O-acetyltransferase XOAT1
Current Position: Ph.D. candidate in the Department of Biochemistry and Molecular Biology at the University of Georgia
Education: B.S. and M.S. in Forestry and…
Recognizing Plant Cell authors: Vladimir V. Lunin
The Plant Cell, The Plant Cell: Author ProfilesVladimir V. Lunin, co-first author of Molecular mechanism of polysaccharide acetylation by the Arabidopsis xylan O-acetyltransferase XOAT1
Current Position: Scientist IV, Biosciences Center, National Renewable Energy Lab
Education: PH.D. In Chemistry awarded by the Institute of Crystallography of…
Recognizing Plant Physiology authors: Kamal Kumar Malukani
Plant Physiology, Plant Physiology: Author ProfilesKamal Kumar Malukani, first author of Dual activities of receptor like kinase OsWAKL21.2 induce immune responses
Current Position: Research Associate in the lab of Dr. Ramesh V. Sonti at CSIR-Centre for Cellular and Molecular Biology (CCMB), Hyderabad, India. Looking for postdoc in plant-microbe interaction.
Education:…
In the Search for the SWEETest Pear
Plant Physiology, Plant Physiology: News and Views, ResearchIf you close your eyes and think about the most delicious fruit you have ever tasted, it is likely that one specific characteristic will come to mind (and mouth!): its sweetness. Humans have a natural appreciation of plant sugars, and it is no surprise that enhanced sugar content is among the most desired…
Defense, fast and slow: activation of different MAPK pathways in response to wounding
Research, The Plant Cell, The Plant Cell: In BriefIn a world full of herbivores and mechanical stresses, the ability to sense and respond to wounding is crucial for plants, as injuries open doors for phytopathogen entry and allow uncontrolled evaporation. Wounding triggers local and systemic defenses that heal injuries, make plants taste unpleasant…
A closed mouth catches no pathogens: how plants sense bacteria and regulate stomata
Research, The Plant Cell, The Plant Cell: In a NutshellChan, Panzeri, et al. show how a receptor-like kinase regulates stomatal immunity by phosphorylating an anion channel that mediates closure of stomata. Plant Cell. https://doi.org/10.1105/tpc.19.00578
By Ching Chana,b and Laurent Zimmerlia
aDepartment of Life Science and Institute of Plant Biology,…
Tissue-resolved multi-omics atlas of Arabidopsis (Nature)
Plant Science Research WeeklyArabidopsis as a model system has been intensively studied over the past twenty years, but the proteome of Arabidopsis has been less well characterized. Here, Mergner et al. report the first 30-tissue-type integrated proteome, phosphoproteome and transcriptome atlas of Arabidopsis. The data cover the…
Plant 22-nt siRNAs mediate translational repression and stress adaptation (Nature)
Plant Science Research WeeklyAmong the myriad small interfering RNAs, 21- and 24-nucleotides siRNAs control plant development and immunity through mRNA cleavage and RNA-directed DNA methylation, respectively. Still, the regulation and biological function of 22-nt siRNAs remain unresolved. In this report, Wu and coworkers investigated…
An RNA thermoswitch regulates daytime growth in Arabidopsis (Nature Plants)
Plant Science Research WeeklyPlants are sessile organisms and as such they must be highly responsive to environmental cues including temperature, and adjust their growth and development accordingly. Considering that mean global surface temperatures are expected to continue to rise dramatically in the 21st century, it is crucial…
MASS proteins and stomatal development in Arabidopsis (PLOS Genetics)
Plant Science Research WeeklyStomata are the pores surrounded by a pair of guard cells on the plant epidermis that help in gaseous exchange. The number and spacing of stomata are regulated by a series of phosphorylation and de-phosphorylation events of key transcription factors through the mitogen-activated protein kinase (MAPK)…
Intertwined signatures of desiccation and drought tolerance in grasses (PNAS)
Plant Science Research WeeklyDesiccation tolerance (i.e., the capacity of surviving with very low water content) is widespread in seeds and pollen, but quite rare in vegetative organs. Most authors agree that in angiosperms it originated multiple independent times from rewiring seed desiccation tolerance pathways. Here, Pardo et…
Mechanical shielding in plant nuclei (Curr. Biol.)
Plant Science Research WeeklyThe nucleus is an organelle with tremendous shape flexibility in response to environmental cues; it has been described as the “plastic, elastic, and fantastic” organelle. The change in nuclear geometry based on mechanical stress is well documented from single cell studies in culture, but the question…
A molecular toolkit for screening elite rhizobia (PNAS)
Plant Science Research WeeklyN2-fixing rhizobia bacteria are able to establish symbiotic interactions with legumes in specialized organs called root nodules. Identifying elite rhizobia that are both competitive for nodule occupancy and effective in N2 fixation in agricultural environments is crucial for maximizing the yield of legumes.…
Plant Science Research Weekly: May 8th
Blog, WWR Full PostTissue-resolved multi-omics atlas of Arabidopsis
Arabidopsis as a model system has been intensively studied over the past twenty years, but the proteome of Arabidopsis has been less well characterized. Here, Mergner et al. report the first 30-tissue-type integrated proteome, phosphoproteome and transcriptome…
Life is Sweeter with Trehalose 6-Phosphate
Research, The Plant Cell, The Plant Cell: In BriefBesides making our daily lives sweeter, sugars are the most important energy source in all organisms. Balancing their availability and regulating their partitioning between tissues are major determinants for growth and development. In plants, sucrose is the main product of photosynthesis and is transported…
Recognizing Plant Cell authors: Ching Chan
The Plant Cell, The Plant Cell: Author ProfilesChing Chan, first author of STRESS INDUCED FACTOR 2 regulates Arabidopsis stomatal immunity through phosphorylation of the anion channel SLAC1
Current Position: Post-doctoral researcher, Academia Sinica, Taiwan
Education: PhD in Biology (The Chinese University of Hong Kong); MPhil and BSc in Biochemistry…
Closing Gaps and Opening New Avenues During Megasporogenesis of Rice
Plant Physiology, Plant Physiology: News and Views, ResearchThe formation of the mature female gametophyte is one of the most complex processes in plants. It requires successive rounds of diploid mitosis, followed by meiosis and finally haploid mitosis, not to mention cell differentiation and cell degeneration in the multicellular gametophyte. Since the female…
The Basis of Glyphosate Resistance in Palmer Amaranth
Research, The Plant Cell, The Plant Cell: In a NutshellMolin et al. describe the sequence and gene organization of an extrachromosomal circular DNA element, the eccDNA replicon, that confers resistance to the herbicide glyphosate in amaranths. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00099
By William Molin a and Christopher Saski b, a USDA-ARS,…
Recognizing Plant Physiology authors: Javier Brumos
Plant Physiology, Plant Physiology: Author ProfilesJavier Brumos, first author of Structure-function analysis of interallelic complementation in ROOTY transheterozygotes
Current Position: Research Scholar in the Alonso-Stepanova laboratory, Department of Plant and Microbial Biology, Program in Genetics, North Carolina State University, Raleigh, NC,…
APC/CTE Shapes Rice Architecture from Top to Bottom
Research, The Plant Cell, The Plant Cell: In BriefGibberellins (GAs) and abscisic acid (ABA) affect plant development in an opposite manner. GA is generally considered a growth promoting hormone, whereas ABA signaling, triggered in response to stress, counteracts the GA effects and restricts growth under suboptimal conditions (Vanstraelen and Benkova,…
Role of DnaK-DnaJ proteins in PSII repair
Plant Physiology, Plant Physiology: News and Views, ResearchAnanya Mukherjee
ORCID ID: 0000-0003-1802-1806
[email protected]
University of Nebraska Lincoln
Lincoln, NE 68588
Climate change is expected to make drought far more severe and frequent for plants all over the world (Bartlett et al., 2016). Drought affects yield, growth, and development…
Y keep your X? Insights into the genetic basis of plant sex chromosome evolution
Research, The Plant Cell, The Plant Cell: In BriefContrary to animals, sex chromosomes in flowering plants (angiosperms) have evolved at least hundreds of times independently, providing an opportunity to unravel the mechanisms underlying their repeated evolution.
In the XY system, the Y chromosome dominantly confers male identity: XY individuals…
A Chloroplast tRNA-Modifying Enzyme Functions in Plant Development
Research, The Plant Cell, The Plant Cell: In a NutshellLiu, Ren et al. discover how a natural allele of tRNA-modifying GTPase gene PDD leads to pleiotropic developmental defects in rice. Plant Cell https://doi.org/10.1105/tpc.19.00660.
By Hui Liu and Pingli Lu
Fudan University and Henan University
Background: Transfer RNAs (tRNAs) are components…
On the Importance of Variation: A High-Resolution Map of Copy Number Variants in Arabidopsis
Research, The Plant Cell, The Plant Cell: In BriefLinking genotype to phenotype is a major challenge in plant biology. Phenotypic variation observed between individuals of a same plant species is the consequence of a vast array of genetic variation, including Single Nucleotide Polymorphisms (SNPs) and small or large structural variants including Copy…
From Fuzziness to Clarity: Regulation of DRP5B Ring Dynamics at the Chloroplast Division Site
Plant Physiology, Plant Physiology: News and Views, ResearchTianhu Sun
ORCID ID: 0000-0002-2513-1387
Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853
[email protected]
Plant cells harbor a varying number of chloroplasts and chloroplasts multiply by division to maintain the continuity…
Seed-Specific Saponin Biosynthesis in Medicago
Research, The Plant Cell, The Plant Cell: In a NutshellRibeiro, Lacchini et al. discover a seed-specific transcription factor that helps determine the composition of the defense compounds saponins in developing Medicago truncatula seeds. Plant Cell https://doi.org/10.1105/tpc.19.00609
By Elia Lacchini, Alain Goossens, and Jacob Pollier
VIB-UGent…
Cell Wall Remodeling During Wood Development
Plant Physiology, Plant Physiology: News and Views, ResearchMadeleine Seale
Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, OX1 3RB, United Kingdom
[email protected]
ORCID: 0000-0002-8924-3943
Wood formation occurs via radial proliferation of vascular cambium cells and the deposition of secondary cell wall layers…
TREHALOSE-6-PHOSPHATE SYNTHASE1 – an essential enzyme in Arabidopsis
Research, The Plant Cell, The Plant Cell: In a NutshellFichtner et al. transformed the embryo-lethal mutant tps1 with variants of the TPS1 gene to identify critical domains for function and localization of the gene product. The Plant Cell (2020) https://doi.org/10.1105/tpc.19.00837
By Franziska Fichtner1,2 and John Lunn1, 1Max Planck Institute of Molecular…
Review: Evolution of virulence in rust fungi — multiple solutions to one problem (COPB)
Plant Science Research WeeklyRust fungi are a diverse group (more than 7800 species) of phytopathogenic fungi that cause considerable economic loss. (Coincidently, I’m writing on Robigalia, the Roman “anti-rust” festival, which dates from before we understood that microbes, not gods, cause disease). Figurero et al. have written…
Review: Plant science's next top models (Ann. Bot)
Plant Science Research WeeklyThale cress (Arabidopsis thaliana) has been the absolute star of plant science research for more than 40 years, being the ideal model organism for its ease of handling and transferable knowledge to crops. In this review, Cesarino and coworkers explain how advances in "omics" technologies, together with…
No-Genome-Required-GWAS (Nature Genetics)
Plant Science Research WeeklyConventional approaches to connect phenotype to genotype, including genome-wide association studies (GWAS), are often limited by the quality of the species’ reference genome, and frequently neglect to detect structural variants that are common in plant genomes. Here, Voichek and Weigel present a “No-Genome-Required-GWAS”…
A close-up view of the thylakoids (eLIFE)
Plant Science Research WeeklyThe thylakoid membranes inside the chloroplasts house the major protein complexes required for photosynthesis, including photosystems I and II (PSI/II), the b6f complex and ATP synthase. To optimize photosynthetic efficiency, the distribution and abundance of these complexes are dynamically regulated…
Nuclear-encoded synthesis of the D1 subunit of photosystem II increases photosynthetic efficiency and crop yield (Nature Plants)
Plant Science Research WeeklyPhotosystem II (PSII) is a protein complex located in the thylakoid membrane of chloroplasts that is involved in executing the initial reaction of photosynthesis in plants. When plants are exposed to extreme temperature conditions, PSII gets damaged. To repair the damage, one of the core proteins of…
Nitrate defines shoot size through compensatory roles for endoreplication and cell division (Curr. Biol.)
Plant Science Research WeeklyIn this paper, Moreno et al. investigate how nitrate affects the balance between cell proliferation and cell expansion in shoots during early seedling development. They note that the cells in Arabidopsis cotyledons undergo considerable enlargement, and that the increase in cell size is correlated with…
Symplastic auxin transport: Active, passive or both? (Curr. Biol.)
Plant Science Research WeeklyAdjacent cells in plants are connected by cytoplasmic connections called plasmodesmata (PD) and the movement through PD is called symplastic movement. Studies have shown that auxin transport between cells is protein-dependent, but it is not clear whether it can also move freely in the symplastic pathway.…
Aquaporins act in concert to regulate cold acclimation and freezing tolerance (Plant Cell Physiol.)
Plant Science Research WeeklyAquaporins, also known as plasma membrane intrinsic proteins (PIP), are a large group of transporters that facilitate water transport through membranes. In this article, Rahman et al. explored the role of aquaporins in the cold stress response. They found that two aquaporin genes, PIP1;4 and PIP2;5,…
Phylogenomic evidence for reductive evolution of stomata (Curr. Biol.)
Plant Science Research WeeklyColonization of the terrestrial environment by land plants (embryophytes), a monophyletic clade that evolved from freshwater streptophyte algae, forever changed Earth by transforming biogeochemical cycles. The evolution of stomata was a key adaptation that allowed the colonization of terra firma. Present…
A plant secondary metabolite selectively targets bacterial pathogenicity (Cell Host Microbe)
Plant Science Research WeeklyPlants have a variety of secondary metabolites that are associated with defense against pathogens, but the mode of action of such metabolites is poorly understood. Wang et al. revealed that the Arabidopsis secondary metabolite sulforaphane (SFN), which is derived from aliphatic glucosinolate, suppresses…
Interplay between phosphorylation and ubiquitination is key for regulating reactive oxygen species during plant immunity (Nature Comms)
Plant Science Research WeeklyReactive oxygen species (ROS) are essential secondary messengers for rapid transmission of local and long-distance signalling in plants. Respiratory oxidase homologs (RBOHs) are the family of enzymes in plants that produce extracellular ROS, with RBOHD being the primary oxidase in Arabidopsis for ROS…
Morphology, molecular development and ecological function of pseudonectaries on Nigella damascena petals (Nature Comms)
Plant Science Research WeeklyPseudonectaries do not secrete nectar like nectaries. So, what are their ecological functions? Are there any morphological and anatomical differences between them and true nectaries? How do they develop and evolve? Liao et al. examined pseudonectaries of Nigella damascene to answer these questions. The…
How animals shaped fruit traits, and how they did not (Funct. Ecol.)
Plant Science Research WeeklyThe dispersal syndrome hypothesis states that frugivores and fleshy-fruited plants coevolve by exerting selective pressures on each other. Even though this idea still prevails, some theoretical issues could make this scenario improbable. As a result, a new chicken-or-egg dilemma appeared: are the frugivores…
Plant Science Research Weekly: May 1st
Blog, WWR Full PostReview: Evolution of virulence in rust fungi — multiple solutions to one problem
Rust fungi are a diverse group (more than 7800 species) of phytopathogenic fungi that cause considerable economic loss. (Coincidently, I’m writing on Robigalia, the Roman “anti-rust” festival, which dates from…
Activate, Breakdown, Branch Out: CUC2/3-DA1-UBP15 Controls Axillary Meristem Initiation
Research, The Plant Cell, The Plant Cell: In BriefShoot architecture is a key ecological and agricultural trait that impacts biomass, the potential to harvest light, planting density, and the reproductive success of a plant. Branching is a prominent feature of plant shoot architecture. A shoot branch develops from an axillary bud, which is located in…
Recognizing Plant Physiology authors: Hongchao Li
Plant Physiology, Plant Physiology: Author ProfilesHongchao Li, first author of Maize plant architecture is regulated by the ethylene biosynthetic gene ZmACS7
Current Position: Ph.D. student, National Maize Improvement Center, China Agricultural University
Education: Ph.D. student in Crop Genetics and Breeding and M.Sc. in Agricultural Extension…
CO2 Concentration in Chlamydomonas: Effect of the Pyrenoid Starch Sheath
Plant Physiology, Plant Physiology: News and Views, ResearchAnanya Mukherjee
ORCID ID: 0000-0003-1802-1806
[email protected]
University of Nebraska Lincoln
Lincoln, NE 68588
In the photosynthetic Calvin-Benson cycle, the enzyme ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) fixes CO2 into organic compounds. A major limitation…
Recognizing Plant Physiology authors: Stephanie Klein
Plant Physiology, Plant Physiology: Author ProfilesStephanie Klein, first author of Multiple integrated root phenotypes are associated with improved drought tolerance
Current Position: PhD Candidate, Pennsylvania State University, University Park, PA, USA
Education: B.Sc. University of Illinois at Urbana-Champaign, Urbana, IL, USA
Non-scientific…
Recognizing Plant Physiology authors: Shengjin Liao
Plant Physiology, Plant Physiology: Author ProfilesShengjin Liao, first author of Cell wall invertase is essential for ovule development through sugar signaling rather than provision of carbon
Current Position: Assistant Professor, Beijing Academy of Agriculture and Forestry Sciences (BAAFS)
Education: PhD in Biological Sciences, B. Biotech (Hons)…
Drawing in the Net: Forty-Five Maize Gene Regulatory Networks from Over 6,000 RNA-Seq Samples
Research, The Plant Cell, The Plant Cell: In BriefEukaryotic gene expression is largely governed by transcription factors (TFs), the nuclear proteins that bind to specific DNA sequences and determine when and where genes are turned on. Transcriptional gene regulatory networks (GRNs) that modulate developmental processes and environmental responses consist…
A well-oiled machine: two fatty-acid exporters involved in seed oil biosynthesis
Plant Physiology, Plant Physiology: News and Views, ResearchA well-oiled machine: two fatty-acid exporters involved in seed oil biosynthesis
Mehran Dastmalchi
[email protected]
Oilseed plants such as canola (Brassica spp.) are a massive, multi-billion dollar industry, with their lipids contributing to food, cosmetics, polymers and biofuels. For the…
Ouch! Plant perception of wounding
Research, The Plant Cell, The Plant Cell: In a NutshellSözen et al. describe two independent MAPK signaling cascades that are each activated with different kinetics, providing an immediate and delayed response to herbivore feeding. The Plant Cell (2020) https://doi.org/10.1105/tpc.19.00917
By Cécile Sözen, Marie Boudsocq and Jean Colcombet, Université…
Recognizing Plant Direct authors: Wei Hu
Plant Direct, Plant Direct: Author ProfilesWei Hu, first author of Regulation of monocot and dicot plant development with constitutively active alleles of phytochrome B
Current Position: Assistant project scientist at Prof. J. Clark Lagarias’ Laboratory, Department of Molecular and Cellular Biology, University of California Davis, USA
Education:
PhD,…
Tuning to the signal of stress: sub-cellular regulation of abscisic acid receptor abundance by E3 ubiquitin ligases
Plant Physiology, Plant Physiology: News and Views, ResearchMagdalena M. Julkowska
[email protected]
Developmental and environmental changes are communicated systemically throughout the plant by various signals, ranging from electric currents to plant hormones. As the responses elicited by the systemic signals depend on the tissue…
Repression of FUSCA3 by BASIC PENTACYSTEINE PROTEINS promotes ovule development and coordinates embryo and endosperm growth
Research, The Plant Cell, The Plant Cell: In a NutshellWu et al. found that FUSCA3, which regulates seed development, is localized to specific cells of the ovule and seed coat and is itself regulated by BASIC PENTACYSTEINE (BPC) proteins. Plant Cell https://doi.org/10.1105/tpc.19.00764
By Sonia Gazzarrini (University of Toronto, Dept. Biological Sciences…
Recognizing Plant Direct authors: Deborah Petrik
Plant Direct, Plant Direct: Author ProfilesDeborah Petrik, first author of BdGT43B2 functions in xylan biosynthesis and is essential for seedling survival in Brachypodium distachyon
Current Position: Visiting Assistant Professor of Biology, Rhodes College, Memphis, TN
Education:
PhD in Biological Sciences, Illinois State University, 2015
M.S.…
Certain Flippases Are Important for Vegetative Growth
Plant Physiology, Plant Physiology: On The InsideLipid flippases hydrolyze ATP to flip lipids across a membrane bilayer toward cytosolic facing leaflets, whether that be from the outer leaflet of the plasma membrane (PM) or luminal leaflet of internal membranes. Flippases are proposed to be involved in multiple processes, such as flipping specific…
Cytokinin signaling patterns maize leaves, otherwise things get hairy and frayed
Research, The Plant Cell, The Plant Cell: In a NutshellVariation in leaf morphology across the angiosperms is impressive and abounds. Leaves are the primary photosynthetic organ for most angiosperms, acting as the primary sites of light capture and gas exchange. Typical of grass leaves, maize leaves are strap-like and simple, with unelaborated margins. Leaves…
Regulation of a K+ Channel A by Phosphorylation
Plant Physiology, Plant Physiology: On The InsidePotassium (K+) serves important roles in plants for the control of cellular pH, regulation of membrane electric potentials and cell turgor, and as a cofactor in essential metabolic processes including protein synthesis. Plasma membrane voltage-gated K+ channels are crucial for K+ uptake, release, and…
Callose Suppresses Low Calcium-Induced Cell Death
Plant Physiology, Plant Physiology: On The InsideCalcium (Ca) deficiency symptoms often occur in crops because Ca is mainly translocated by the transpiration stream, and conditions that affect transpiration can cause Ca deficiency. Because Ca is translocated via the transpiration stream, it tends to accumulate more in older, expanded leaves and less…
Role of Plasma Membrane Aquaporins in Maize
Plant Physiology, Plant Physiology: On The InsideAquaporins belonging to the plasma membrane intrinsic protein (PIP) subfamily are key players in determining membrane water permeability. Since the overall root hydraulic conductivity (Lpr) depends on the integration of conductivity from three pathways (symplastic, apoplastic and transcellular), it…
The Smell of a Peach or Not
Plant Physiology, Plant Physiology: On The InsideFruit aromas attract seed-dispersal agents in nature and are critical determinants of human fruit choice. In the process of constructing a peach (Prunus persica) core germplasm collection, Peng et al. (10.1104/pp.19.00964) analyzed the characteristics of peach cultivars in the National Fruit Germplasm…
New Insights into Chloroplast Division
Plant Physiology, Plant Physiology: On The InsideChloroplasts divide by binary fission, a process that is driven by a ring-like multiprotein complex spanning the inner and outer envelope membranes (OEMs) at the site of division. DYNAMIN-RELATED PROTEIN 5B (DRP5B/ ARC5), a cytosolic component of the chloroplast division machinery, is thought to function…
Recognizing Plant Physiology authors: Chen-Kun Jiang
Plant Physiology, Plant Physiology: Author ProfilesChen-Kun Jiang, first author of Insight into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants
Current Position: Doctoral candidate, School of Life Sciences, Peking University, Beijing, China
Education: B.S., School of Life Sciences, Peking University, Beijing, China
Non-scientific…
Recognizing Plant Physiology authors: Rodrigo Siqueira Reis
Plant Physiology, Plant Physiology: Author ProfilesRodrigo Siqueira Reis, first author of Modulation of shoot phosphate level and growth by PHOSPHATE1 upstream open reading frame
Current Position: Postdoc at University of Lausanne, Switzerland
Education: PhD in Molecular Biology (University of Sydney, Australia), MSc in Biochemistry (UFRJ, Brazil)…
Recognizing Plant Cell authors: Franziska Fichtner
The Plant Cell, The Plant Cell: Author ProfilesFranziska Fichtner, first author of Functional features of TREHALOSE-6-PHOSPHATE SYNTHASE1 - an essential enzyme in Arabidopsis thaliana
Current Position: Postdoctoral Research Associate, School of Biological Sciences, The University of Queensland, St Lucia, Australia
Education: PhD in Molecular…
Recognizing Plant Physiology authors: Marianne Slaten
Plant Physiology, Plant Physiology: Author ProfilesMarianne Slaten, first author of mGWAS Uncovers Gln-Glucosinulate Seed-Specific Interaction and its Role in metabolic Homeostasis
Current Position: PhD candidate, Department of Biological Sciences, University of Missouri, Columbia, MO, USA
Education: PhD student in the research group of Dr. Ruthie…
Recognizing Plant Cell authors: Ting Ting Xiao
The Plant Cell, The Plant Cell: Author ProfilesTing Ting Xiao, co-first author of A Homeotic Mutation Changes Legume Nodule Ontogeny into Actinorhizal-type Ontogeny
Current position: Postdoc researcher at Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Saudi Arabia
Education background:…
Recognizing Plant Cell authors: Defeng Shen
The Plant Cell, The Plant Cell: Author ProfilesDefeng Shen, co-first author of A Homeotic Mutation Changes Legume Nodule Ontogeny into Actinorhizal-type Ontogeny
Current Position: Postdoctoral researcher, Group of Tonni Grube Andersen, Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany
Education:…
Gene Dosage Balance Immediately Following Whole-Genome Duplication in Arabidopsis thaliana
Research, The Plant Cell, The Plant Cell: In BriefFlowering plants have witnessed multiple cycles of whole-genome duplication (WGD) over the past 200 million years of evolution. Typically, WGD increases genome size and gene content, followed by gene loss, or fractionation, depending on functional categories. Certain classes of genes are retained as…
Recognizing Plant Physiology authors: Faye McDiarmid
Plant Physiology, Plant Physiology: Author ProfilesFaye McDiarmid, co-first author of Virus-mediated transient expression techniques enable gene function studies in black-grass
Current Position: Scientific Technician at Rothamsted Research
Education: BSc at University College London (UCL)
Non-scientific Interests: Gardening, cooking, shopping,…
Recognizing Plant Physiology authors: Macarena Mellado-Sánchez
Plant Physiology, Plant Physiology: Author ProfilesMacarena Mellado-Sánchez, co-first author of Virus-mediated transient expression techniques enable gene function studies in black-grass
Current Position: PhD student in the group of Cristina Barrero-Sicilia at University of Hertfordshire and Plant Impact, United Kingdom
Education: Ph.D. in Plant…
Reviews: The physiology of plant responses to drought, and forests and drought ($) (Science)
Plant Science Research WeeklyThe increasing global population causes an increasing need for food, but the changing climate means increasing drought occurrences. The April 17 2020 special issue of Science focusses on drought and its effects on food and the environment. The issue includes a fine review by Gupta et al. that provides…
Review: More than a pinch of salt: How plants tolerate salty conditions (Annu. Rev. Plant Biol.)
Plant Science Research WeeklyHigh soil salinity has implications greater than what meets the eye; in addition to the apparent ‘ionic’ stress caused by the toxic sodium (Na+) and chloride (Cl-) ions, it causes osmotic stress (drought-like condition), altered potassium (K+) homeostasis, inhibition of photosynthesis and a plethora…
Meltome atlas: revealing protein thermal stability across the tree of life (Nature Methods)
Plant Science Research WeeklyEnvironmental cues can affect the structure and function of proteins. To get broad empirical information about the effect of temperature on protein stability, Jarzab, Kurzawa, Hopf et al. generated an atlas of proteome thermal stability across 13 model organisms, including bacteria, yeast, worm, fish,…
AthCNV: A map of DNA copy number variations in the Arabidopsis thaliana genome (Plant Cell)
Plant Science Research WeeklyIntraspecific phenotypic variability can be attributed to differences at the genome level such as copy number variations (CNVs). CNVs are large DNA fragments which differ in number between individuals and likely have a crucial evolutionary role. Due to the 1001 Genomes Project, over 1,000 Arabidopsis…
Evolution of tetraploid meiosis (PNAS)
Plant Science Research WeeklyGenome duplications are common in plants and thought to be an important contributor to evolutionary innovations, but the increase in ploidy that results from a genome duplication also presents challenges for reproduction. Because there are four sets of homologous chromosomes in the derived tetraploid…
A regulatory module for survival on low potassium (Nature Plants)
Plant Science Research WeeklyPotassium ions (K+) play a variety of important roles in plant physiology and are maintained at a high concentration in the cytosol relative to the available K+ in the environment. Potassium may accumulate to an even higher concentration in the vacuole, where it helps to regulate turgor pressure. During…
Maize aquaporin PIP2;5 alters water relations and plant growth (Plant Physiol)
Plant Science Research WeeklyAquaporins, also known as water channels, are conserved across all kingdoms. In plants, the plasma membrane intrinsic protein (PIP) subfamily controls membrane water permeability. Maize aquaporin PIP2;5 is highly expressed in roots. By reverse genetic approaches, Ding et al. showed that overexpression…
Structural evolution drives diversification of the large LRR-RLK gene family (New Phytol)
Plant Science Research WeeklyLeucine-rich repeat receptor-like kinases (LRR-RLKs) act as signaling receptors, are the largest plant-specific protein kinase family, and are involved in myriad developmental activities and defense systems. Due to the large number of proteins in this group, their diversification and consequent redundancy…
Mystery of adventitious root formation in grapevine (Plant Physiol)
Plant Science Research WeeklyGrapevines (Vitis vinifera L.) are clonally propagated by stem cuttings, which depends on the formation of adventitious (stem-borne) roots. In this paper Chen at al., showed the function of microRNA encoded peptides (miPEPs) in adventitious root formation of cultured grape plantlets. MicroRNA biogenesis…
Innovation, conservation, and repurposing of gene function in plant root cell type development (bioRxiv)
Plant Science Research WeeklyRoots have many specialized cells arranged in concentric circles that are functionally homologous among various plant species but with varying cell-type-specific developmental programs. To further understand these developmental programs, Kajala et al. performed TRAPseq (Translating Ribosome Affinity…
Trichomes: a means for foliar water uptake (FWU) (Plant J)
Plant Science Research WeeklyFoliar water uptake (FWU); water uptake through the leaf surface, is observed in several species and helps in drought conditions through water uptake from fog, snow, dew and rain. In this paper, Schreel et al. showed trichomes as a major source of FWU in beech (Fagus sylvatica L.) plants. Trichomes are…
How plants keep their microbiota healthy (Nature)
Plant Science Research WeeklyThe large apoplastic intercellular space of plant leaves creates nutrient-rich niches for microbial colonization. To date, whether and how plants control the composition of leaf microbiota is poorly understood. Chen et al. reported that the Arabidopsis quadruple mutant (min7fls2efrcerk1 or mfec)…
Extensive inter-plant protein transfer between Cuscuta parasites and their host plants (Mol. Plant)
Plant Science Research WeeklyCuscuta (dodders) are parasites that survive on other host plants.Liu et al. found more than 1500 proteins are transferred between Cucuta and host plants forming a sort of interplant chemical communication. Furthermore, proteins could move between two hosts that are connected by dodder bridges, and retain…
Nikolaeva et al.’s reference book on seed dormancy and germination ($) (Ecology)
Plant Science Research WeeklyIn 1985, Marianna Nikolaeva, Marina Razumova, and Valentina Gladkova published the Reference Book on Dormant Seed Germination. There they provided details on the germination ecology of different plant species –mostly from Northern Europe and Russia. However, since the original publication was in Russian,…
Plant Science Research Weekly: April 24th
Blog, WWR Full PostReviews: The physiology of plant responses to drought, and forests and drought ($)
The increasing global population causes an increasing need for food, but the changing climate means increasing drought occurrences. The April 17 2020 special issue of Science focusses on drought and its effects on…
Recognizing Plant Physiology authors: Daniel Solymosi
Plant Physiology, Plant Physiology: Author ProfilesDaniel Solymosi, first author of Cytochrome cM decreases photosynthesis under photomixotrophy in Synechocystis sp. PCC 6803
Current Position: PhD student in the Photosynthetic Microbes research group, Molecular Plant Biology, Department of Biochemistry, University of Turku, Finland
Education: BSc…
Recognizing Plant Cell authors: Keylla Bicalho
The Plant Cell, The Plant Cell: Author ProfilesKeylla Bicalho, co-first author of A Seed-Specific Regulator of Triterpene Saponin Biosynthesis in Medicago truncatula
Current Position: Postdoctoral researcher at Metabolomics Core – VIB/UGent, Gent, Belgium
Education: PhD and MSc in Organic Chemistry – Natural Products at Federal University…
Recognizing Plant Cell authors: Elia Lacchini
The Plant Cell, The Plant Cell: Author ProfilesElia Lacchini, co-first author of A Seed-Specific Regulator of Triterpene Saponin Biosynthesis in Medicago truncatula
Current Position: Postdoctoral scientist, VIB-UGENT Center for Plant System Biology, Ghent Belgium
Education: B.Sc. Crops and Plant Sciences, University of Milan, Italy; M.Sc. Plant,…
Recognizing Plant Cell authors: Bianca Ribeiro
The Plant Cell, The Plant Cell: Author ProfilesBianca Ribeiro, co-first author of A Seed-Specific Regulator of Triterpene Saponin Biosynthesis in Medicago truncatula
Current Position: Postdoctoral researcher at KU Leuven, Belgium
Education: PhD in Biochemistry and Biotechnology at Ghent University, Belgium; MSc in Genetics and Plant Breeding…
Branch Formation (or Not) in the Leaf Axil
Research, The Plant Cell, The Plant Cell: In a NutshellLi et al. report a regulatory module that controls the initiation of axillary meristems, thereby determining plant branching. Plant Cell https://doi.org/10.1105/tpc.20.00012
By Yu Li and Yunhai Li
State Key Laboratory of Plant Cell and Chromosome Engineering, CAS Centre for Excellence in Molecular…
Recognizing Plant Physiology authors: Adrien Burlacot
Plant Physiology, Plant Physiology: Author ProfilesAdrien Burlacot, first author of Membrane inlet mass spectrometry at the crossroads of photosynthesis, biofuel and climate research
Current Position: Post Doc, Biosciences and Biotechnology Institute of Aix-Marseille
Education: PhD in Plant Science, Aix-Marseille University
Non-scientific Interests:…
Recognizing Plant Cell authors: Justine Sucher
The Plant Cell, The Plant Cell: Author ProfilesJustine Sucher, first author of Phylotranscriptomics of the Pentapetalae reveals frequent regulatory variation in local plant responses to the fungal pathogen Sclerotinia sclerotiorum
Current Position: Post-doctoral Fellow in Syngenta
Education: PhD in molecular biology at UZH (Zürich University),…
Another Brick in the Plant Cell Wall: Characterization of Arabidopsis CSLD3 Function in Cell Wall Synthesis
Research, The Plant Cell, The Plant Cell: In BriefPlant cell walls are one of the great engineering feats of nature, providing immense structural strength and durability. The core components of plant cell walls (pectin, hemicellulose, and cellulose) can occur in different proportions and vary in their structure and assembly, thus allowing cell walls…
A new player links ABA biosynthesis and signaling with seed dormancy
Research, The Plant Cell, The Plant Cell: In a NutshellLiu et al. identify new connections between known regulators of seed dormancy, acting through modulation of ABA biosynthesis and signaling. The Plant Cell (2020) https://doi.org/10.1105/tpc.20.00026
By Fei Liu and Yong Xiang, Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome…
Remodeling Flowering: CHROMATIN REMODELING 4 Promotes the Floral Transition
Research, The Plant Cell, The Plant Cell: In BriefPlants that fail to flower at the right time will lose out on seed production. Hence, the transition from vegetative growth to the reproductive phase depends strongly on environmental signals. Cold winter temperatures and long days are seasonal cues that stimulate flowering through vernalization and…
Breaking the Mold: Transcriptome Analysis of Quantitative Disease Resistance to a Fungal Pathogen
Research, The Plant Cell, The Plant Cell: In a NutshellSucher et al. reveal that regulatory divergence of conserved genes makes a major contribution during the response of Pentapetalae plants to a fungal pathogen. Plant Cell. https://doi.org/10.1105/tpc.19.00806
Background:
Necrotrophic plant pathogens actively kill host cells to cause disease. This…
Good Fats, Bad Fats: Phosphoinositide Species Differentially Localize to Plant-Pathogen Interfaces and Influence Disease Progression
Research, The Plant Cell, The Plant Cell: In BriefMany filamentous pathogens invade living plant cells with specialized intracellular infection structures (haustoria) that promote microbial growth. Cytological studies demonstrate that the haustoria of fungal and oomycete pathogens are separated from host cell cytoplasm by a highly differentiated and…
Review. Beyond natural: Synthetic expansions of botanical form and function (New Phytol.)
Plant Science Research Weekly“The goal of synthetic biology is to advance the ability to dependably and consistently design or reprogram living organisms and to fabricate products from biologically-derived materials.” In this review, Patron focuses on the principles derived from engineering that are foundational to synthetic…
Review: A CRISPR way for accelerating improvement of food crops (Nature Food)
Blog, Plant Science Research WeeklyCRISPR technologyhas become indispensable for basic plant biology research and has the potential to profoundly impact future agriculture. Zhang et al. provide an overview of CRISPR technology and discuss how this technology will revolutionize future crop breeding. CRISPR technology can not only introduce…
Review: The domestication syndrome in vegetatively propagated field crops (Ann. Bot.)
Plant Science Research WeeklyArcheological remains and genetic analyses of ancient DNA have revealed that the loss of seed dispersal marks the onset of domestication for sexually reproduced crops such as cereal, legume and oils seed crops, for which annual cultivation is based on sowing seeds. In contrast, less is known about the…
Review: Delayed luminescence of seeds: are shining seeds viable? (Seed Sci. Technol.)
Plant Science Research WeeklyMost of the current methods for assessing seed viability are time-consuming and destructive. As an alternative, some authors have suggested using procedures based on delayed luminescence; an ultra-weak light emitted by biological materials exposed to illumination. Here, Adeboye and Börner review the…
How to transfer lipids from one membrane to another during thylakoid biogenesis (PNAS)
Plant Science Research WeeklyThe thylakoid membranes are located in the stroma of chloroplasts and house the machinery for the photosynthetic light reactions. They emerge largely de novo during the transition from pro-plastids into mature, photosynthesizing chloroplasts. Generating new thylakoid membranes requires a supply of lipids,…
miRNA-mediated lateral inhibition controls rhizoid cell patterning in Marchantia polymorpha (Curr. Biol.)
Plant Science Research WeeklyIn multicellular organisms, the patterning of different cell types in spatial arrays is regulated through several mechanisms, one of which is lateral inhibition, a process well characterized in metazoans. In this process, an individual cell transmits signals to neighboring cells to instruct a different…
AT-hook transcription factors restrict petiole elongation by inhibiting PIF-activated genes (Curr. Biol.)
Plant Science Research WeeklyThe AT-hook motif nuclear localized (AHL) transcription factor family has one or two DNA-binding motifs to bind to AT rich DNA regions, and they also have a conserved PPC-DUF domain for protein-protein interactions. AHLs affect a wide range of biotic and abiotic responses but the mechanism of how they…
Self-activation loop of STM maintains the meristematic activity of cells at leaf axil (Curr. Biol.)
Plant Science Research WeeklyPlasticity in plant development comes from the meristematic cells that are maintained throughout plant growth and among other things produce lateral organs such as shoot branches. In this paper, Cao et al. show that the self-activation loop of SHOOT MERISTEMLESS (STM), a meristem marker gene that encodes…
Self-isolation to the rescue – how plasmodesmata initiate signaling in response to chitin (PNAS)
Plant Science Research WeeklyPlant cells are known to initiate local and systemic signaling in response to certain stressful conditions to safeguard cells in the immediate vicinity as well as that are far from the site of stimuli. In this study, Cheval and co-workers have characterized a pathway in plant cells for sensing and responding…
Subtilase activity in intrusive cells mediates haustorium maturation in parasitic plants (bioRxiv)
Plant Science Research WeeklyParasitic plants develop unique structures called haustoria that penetrate into the host plant vasculature, from which they take nutrients. During this process, haustorial epidermal cells differentiate into specialized cells called intrusive cells, which eventually re-differentiate into a xylem bridge…
DNA methylation and integrity in aged seeds and regenerated plants ($) (Seed Sci. Res.)
Plant Science Research WeeklyUnderstanding seed aging is crucial to comprehend seed longevity in the field and to design ex situ conservation programs. However, the mechanisms behind seed aging are underexplored. In this paper, Mira et al. assessed the changes in DNA integrity and methylation between aged and non-aged seeds of Mentha…
Early Holocene crop cultivation and landscape modification in Amazonia (Nature)
Plant Science Research WeeklyTo date, archeobotanical and genetic studies indicated four centers of plant cultivation in the early Holocene: China and the Near East in the Old World, and southwestern Mexico and northwestern South America in the New World. Recent research of Lombardo et al. revealed that Llanos de Moxos (Bolivia)…
Plant Science Research Weekly: April 17th
WWR Full PostReview. Beyond natural: Synthetic expansions of botanical form and function
“The goal of synthetic biology is to advance the ability to dependably and consistently design or reprogram living organisms and to fabricate products from biologically-derived materials.” In this review, Patron focuses…
Recognizing Plant Physiology authors: Isha Kalra
Plant Physiology, Plant Physiology: Author ProfilesIsha Kalra, first author of Chlamydomonas sp. UWO 241 exhibits high cyclic electron flow and rewired metabolism under high salinity
Current Position: Ph.D. candidate, Microbiology Department, Miami University
Education: B.E. (Hons.) Electronics and Instrumentation + MSc. (Hons.) Biological Science…
DREPP in Nanodomains Regulates Microtubule Fragmentation during Symbiotic Infection
Research, The Plant Cell: In BriefIn the legume-rhizobium root nodule, nitrogen fixing rhizobia are accommodated inside plant cells. In the Medicago – Sinorhizobium model system, the internalization of rhizobia into the host plant is triggered by Nod factors secreted from the symbiotic bacteria. The signals are perceived by the host…
Recognizing Plant Cell authors: Xixi Zhang
The Plant Cell, The Plant Cell: Author ProfilesXixi Zhang, first author of Arabidopsis Flippases Cooperate with ARF GTPase Exchange Factors to Regulate the Trafficking and Polarity of PIN Auxin Transporters
Current Position: Predoctoral visiting scientist in Prof. Jiří Friml’s lab at Institute of Science and Technology, Austria (IST Austria);…
Copy Number Variations in the Arabidopsis Genome
Research, The Plant Cell, The Plant Cell: In a NutshellŻmieńko et al. generate a catalog of large copy number variations in Arabidopsis, shedding light on the genetic basis of phenotypic variation. Plant Cell https://doi.org/10.1105/tpc.19.00640
By Agnieszka Żmieńko and Marek Figlerowicz, Institute of Bioorganic Chemistry, Polish Academy of Sciences,…
Recognizing Plant Direct authors: Yinghui Li
Plant Direct, Plant Direct: Author ProfilesYinghui Li, first author of Exogenous sodium diethyldithiocarbamate, a Jasmonic acid biosynthesis inhibitor, induced resistance to powdery mildew in wheat
Current Position: post-doctoral researcher
Education: PhD and Master, College of Agriculture, China Agricultural University, Beijing, China
Non-scientific…
The possible danger of divergent non-coding transcription in plants: widespread RNAi
Research, The Plant Cell, The Plant Cell: In a NutshellThieffry et al. give a definitive answer to the question of divergent transcription initiation in Arabidopsis, and discover that if left unchecked, it would lead to rampant RNAi. The Plant Cell (2020) https://doi.org/10.1105/tpc.19.00815
By Albin Sandelin 1,2, Peter Brodersen 1 and Axel Thieffry 1,2,…
Discovering Lipid Droplet Proteins—from Seeds to Seedlings
Plant Physiology, Plant Physiology: News and Views, ResearchLynn GL Richardson, Michigan State University, East Lansing, MI 48843
During germination and early seedling establishment, embryos rely on stored energy for growth and cellular maintenance until photoautotrophic growth takes over. Proteins and lipids make up most of the energy-rich stores in the embryo,…
Flippases Function in PIN Polarity
Research, The Plant Cell, The Plant Cell: In a NutshellZhang et al. elucidate the role of flippases in the polarity and trafficking of PIN auxin transporters. Plant Cell https://doi.org/10.1105/tpc.19.00869
By Xixi Zhang and Jiří Friml
Institute of Science and Technology Austria (IST Austria), Am Campus 1, 3400 Klosterneuburg, Austria
Background:…
It’s All in the Neighborhood: SHORTROOT-mediated Intercellular Signals Coordinate Phloem Development in the Root
Research, The Plant Cell, The Plant Cell: In BriefIn all multicellular organisms, tissue patterning and organogenesis are governed by asymmetric cell divisions (ACDs) and the cellular exchange of positional cues. Plants, unlike animals, undergo post-embryonic organogenesis due to the maintenance of stem cells in specialized niches. One such niche, the…
Recognizing Plant Cell authors: Cécile SÖZEN
The Plant Cell, The Plant Cell: Author ProfilesCécile SÖZEN, first author of Wounding and insect feeding trigger two independent MAPK pathways with distinct regulation and kinetics
Current Position: Currently unemployed, looking for a postdoc position in Plant or Marine biology in Maine (USA)
Education: PhD in the “Stress signaling” group…
Predicting Gene Regulatory Networks
Research, The Plant Cell, The Plant Cell: In a NutshellZhou et al. develop and test potential gene regulatory networks in maize. Plant Cell https://doi.org/10.1105/tpc.20.00080
By Peng Zhou and Nathan Springer
Background: Transcription factors (TFs) play critical roles in regulating the expression of genes. A single TF can control the expression of…
Recognizing Plant Cell authors: Jian Wu
The Plant Cell, The Plant Cell: Author ProfilesJian Wu, first author of Spatiotemporal restriction of FUSCA3 by class I BPCs promotes ovule development and coordinates embryo and endosperm growth
Current Position: Assistant professor, Department of ornamental horticulture, China Agricultural University (since May 2019)
Education: PhD in ornamental…
Recognizing Plant Cell authors: Javier Galdón Armero
The Plant Cell, The Plant Cell: Author ProfilesJavier Galdón Armero, first author of An SEM resource for locating loci influencing epidermal development in tomato reveals a new role for Mixta-like in leaves
Current Position: Field Trial Expert at Seipasa
Education:
2014-2018: PhD in Plant Science at the John Innes Centre, Norwich, UK
2010-2014:…
Recognizing Plant Cell authors: Mike Muszynski
The Plant Cell, The Plant Cell: Author ProfilesMike Muszynski, first author of The Maize Hairy Sheath Frayed1 (Hsf1) Mutation Alters Leaf Patterning Through Increased Cytokinin Signaling
Current Position: Assistant Professor, Department of Tropical Plant and Soil Sciences, College of Tropical Agriculture and Human Resources, University of Hawaiʻi…
Recognizing Plant Physiology authors: Delf Kah
Plant Physiology, Plant Physiology: Author ProfilesDelf Kah, co-first author of Durotropic growth of pollen tubes
Current Position: PhD student at the University of Erlangen-Nuremberg, Germany
Education: M.Sc. in Physics, University of Erlangen-Nuremberg, Germany
Non-Scientific Interests: music, cooking, chess
Brief Bio: I am a PhD student…
Recognizing Plant Physiology authors: Ronny Reimann
Plant Physiology, Plant Physiology: Author ProfilesRonny Reimann, co-first author of Durotropic growth of pollen tubes
Current Position: Editor for chemistry and biology at the publishing house C.C.Buchner, Germany
Education: PhD in Biology, University of Erlangen-Nuremberg, Germany; M.Sc. in Biotechnology, HS Lausitz - University of Applied Sciences,…
KETCHing up with gametogenesis: nucleocytoplasmic import and cell cycle control
Research, The Plant Cell, The Plant Cell: In BriefIn eukaryotes, active import of large signaling molecules and proteins over 40kD in the nucleus is mediated by aptly named “importin” proteins. As there are considerably fewer importins than there are cargos, determining how cargo-transporter specificity is mediated constitutes a challenging issue…
Recognizing Plant Cell authors: Taro Kimura
The Plant Cell, The Plant Cell: Author ProfilesTaro Kimura, first author of Arabidopsis ROOT PHOTOTROPISM2 is a Light-Dependent Dynamic Modulator of Phototropin1
Current Position: Post-doctoral researcher at Niigata University
Education: Ph.D, Master of Science and BSc at Niigata University
Non-scientific Interests: reading, driving, baseball
Brief…
A GDSL Lipase Facilitates Ethylene Signaling in Rice
Research, The Plant Cell, The Plant Cell: In a NutshellZhao et al. investigate the function of a GDSL lipase in ethylene signaling in rice roots The Plant Cell (2020). https://doi.org/10.1105/tpc.19.00840
By He Zhao and Jinsong Zhang, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Background: The plant hormone ethylene…
Perspective: What is replication? (PLOS Biol)
Plant Science Research WeeklyThis is an interesting paper and certainly one to share with students. Nosek and Errington argue that how we usually think of as “replication”, repeating a study and observing the same results, is incorrect. Instead, they argue for abroader definition of replication, as something that supports the…
Introducing plant biology graduate students to a culture of mental well‐being (Plant Direct)
Plant Science Research WeeklyGraduate studies are challenging times, fraught with uncertainty and stress. Dewa et al. addressed this problem head on by developing a required, credited course for first-year graduate students, “Tools for Becoming a Successful Professional and for Enhancing Your Well‐Being and Work Environment”.…
Review: The genetic basis and nutritional benefits of pigmented rice (Frontiers Genetics)
Plant Science Research WeeklyPigmented rice varieties are those in which a pigment is deposited in the bran, the outer layer of the grain. The pigment can be from brown to red (proanthocyanidins) or from purple to black (anthocyanins). In the course of domestication, humans have selected against the genetic factors responsible for…
Genome-phenome wide association in maize and Arabidopsis identifies a common molecular and evolutionary signature (Mol. Plant)
Plant Science Research WeeklyGenome-wide association studies (GWAS) are widely used to link natural genetic variation to trait variation, with a single or a select few correlated traits assessed. High-throughput phenotyping allows the scoring of hundreds of individuals for various traits at several time points. An undeniable consequence…
Versatile auto-luminescent luciferase-based reporters for spatiotemporal gene expression studies (eLIFE)
Plant Science Research WeeklyFirefly luciferase constructs are extensively used for gene expression studies but require a reaction with an exogenous substrate, so expression to some extent reflects tissue penetrance. Khakhar et al. designed customizable auto-luminescence constructs based on a fungal bioluminescence pathway (FBP)…
A natural variant of ORANGE interacts with plastid division factor ARC3 to regulate chromoplast number and carotenoid accumulation (Mol. Plant)
Plant Science Research WeeklySome “superfoods” have high nutritional value due to the presence of carotenoids, which prevent degenerative diseases like cancer. In plants, these pigments are biosynthesized and stored by plastid organelles called chromoplasts. Chromoplast number and size define total carotenoid accumulation. ORHis,…
Structural basis for WUSCHEL binding (bioRxiv)
Plant Science Research WeeklyThe transcription factor WUSCHEL (WUS) plays a central role in organization of the shoot meristem. The three-helix bundle homeodomain in WUS can bind to several distinct DNA sequence motifs in many target genes promoters, but a structural view of these binding events has been lacking. Here Sloan et al.…
Deubiquitinating enzymes UBP12, 13 are antagonistic to E3 ligases BIG BROTHER and DA2 (eLIFE)
Plant Science Research WeeklyPost-translation modifications like ubiquitination and deubiquitination are important to maintain protein homeostasis and in turn plant growth. DA1, and DA1-RELATED PROTEIN 1, 2 (DAR1, DAR2) are latent peptidases activated upon ubiquitination by E3 ligases BIG BROTHER (BB) and DA2. In this paper, Vanhaeren…
Newly identified miRNAs may contribute to aerenchyma formation in sugarcane roots (Plant Direct)
Plant Science Research WeeklySugarcane is one of the major crops for sugar and ethanol production and has been successfully used for first generation ethanol production through sucrose fermentation, but second generation ethanol production, through cell wall depolymerization, is still limited. Aerenchyma formation in sugarcane root…
Sex chromosome evolution in asparagus (Plant Cell)
Plant Science Research WeeklySeparation of male and female flowers on different individuals, called dioecy, has evolved independently many times in flowering plants from hermaphroditic ancestors. A long-standing theory predicts that specialized X and Y sex chromosomes can evolve in dioecious species when mutations occur in two tightly…
CsIVP functions in vasculature development and downy mildew resistance in cucumber (PLOS Biol)
Plant Science Research WeeklyHigh yielding crops are often less resistant to pathogens and vice versa, suggesting that there is an underlying mechanism co-regulating development and disease resistance in plants. Yan et al. identified a transcription factor in cucumber (CsIVP) that regulates vascular development and resistance to…
Auxin response factor targeted by viruses (PNAS)
Plant Science Research WeeklyAuxin regulates various aspects of plant growth and development and it also contributes to plant defense. Auxin activates downstream signaling by promoting degradation of the repressor Aux/IAA proteins to liberate the key transcription factors ARFs (auxin response factors). Pathogens have been known…
Ploidy affects the seed, dormancy and seedling characteristics of a perennial grass, conferring an advantage in stressful climates ($) (Plant Biol.)
Plant Science Research WeeklyBoth polyploidy (i.e., having more than two sets of chromosomes) and seed traits influence plant fitness. However, the interaction between these two factors is underexplored. Here, Stevens et al. tested the effect of polyploidy and seed developmental environment on 1) seed viability and mass; 2) seed…
Individualistic responses of forest herb traits to environmental change ($) (Plant Biol)
Plant Science Research WeeklyFunctional traits have shown promise for their ability to improve predictions of interspecific plant responses to environmental factors, but most trait-based studies have not addressed the role of intraspecific trait variation (ITV) in trait-environment relationships. ITV may be directly or indirectly…
Plant Science Research Weekly: April 10
Blog, WWR Full PostWhite paper: Introducing plant biology graduate students to a culture of mental well‐being
Graduate studies are challenging times, fraught with uncertainty and stress. Dewa et al. addressed this problem head on by developing a required, credited course for first-year graduate students, “Tools…
Thylakoid membranes or a disulfide bond help to properly fold Plsp1, a protein that is essential for photosynthesis
Research, The Plant Cell, The Plant Cell: In a NutshellMcKinnon et al. investigate the effects of a membrane on the folding of a thylakoid protease. Plant Cell https://doi.org/10.1105/tpc.19.00797
By Lucas McKinnon and Steven Theg
Background: Inside a chloroplast is the light-absorbing membrane called the thylakoid, which contains many different proteins…
Cytokinin can reprogram leaf patterning
Research, The Plant Cell, The Plant Cell: In a NutshellMuszynski et al. explore the mechanisms controlling tissue organization in developing leaves.
Plant Cell https://doi.org/10.1105/tpc.19.00677
By Michael G. Muszynski, University of Hawaiʻi – Mānoa
Background: Leaves are responsible for capturing sunlight and carbon dioxide that provide…
Cellulose synthase-like D (CSLD) 3 protein is a beta-1,4-glucan synthase
Research, The Plant Cell: In a NutshellYang et al. probe the biosynthetic activity of a protein involved in cell wall deposition.
Plant Cell https://doi.org/10.1105/tpc.19.00637
Jiyuan Yang, Erik Nielsen. Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
Background:…
Double Crossed: CDKG1 Regulates Crossover Formation by Stabilizing Meiotic and Somatic Recombination Intermediates
Research, The Plant Cell, The Plant Cell: In BriefGenetic recombination is the process by which novel genotypes are generated from the genetic material of both parents. In eukaryotes, homologous chromosomes synapse and recombine during meiotic prophase I, during which double-stranded breaks (DSBs) are formed by DNA topoisomerases such as SPO11. If large…
LACCASE2 negatively regulates lignin deposition of Arabidopsis roots
Plant Physiology, Plant Physiology: News and Views, ResearchLignin is a complex aromatic biopolymer in the secondary cell wall of vascular plants. It is crucial for providing physical strength and pathogen resistance to the plant. Lignified xylem vessels are also necessary for efficient water transport. Lignin is formed by oxidative polymerization of monomers…
Recognizing Plant Cell authors: Alex Harkess
The Plant Cell, The Plant Cell: Author ProfilesAlex Harkess, first author of Sex determination by two Y-linked genes in garden asparagus
Current Position: Assistant Professor, Auburn University; Faculty Investigator, HudsonAlpha Institute for Biotechnology
Education: B.S. Botany, Miami University (OH); Ph.D. Plant Biology, University of Georgia
Non-scientific…
Recognizing Plant Physiology authors: MD Asraful Jahan
Plant Physiology, Plant Physiology: Author ProfilesMD Asraful Jahan, first author of Glyceollin Transcription Factor GmMYB29A2 Regulates Soybean Resistance to Phytophthora sojae
Current Position: Associate Professor, Department of Genetic Engineering and Biotechnology, School of Life Sciences, Shahjalal University of Science and Technology, Sylhet-3114,…
Recognizing Plant Physiology authors: Chao-Yuan Yu
Plant Physiology, Plant Physiology: Author ProfilesChao-Yuan Yu, first author of The unfolded protein response modulates a phosphoinositide-binding protein through the IRE1-bZIP60
Current Position: PhD candidate in Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan and Graduate Institute of Biotechnology, National Chung-Hsing…
How Light Activates the Plant Circadian Clock
Research, The Plant Cell, The Plant Cell: In a NutshellLiu et al. discover how members of the photosensory-signaling pathway orchestrate circadian clock gene expression to regulate plant responses to daily changes in the light environment. Plant Cell https://doi.org/10.1105/tpc.19.00981
Background: Plants use an endogenous time-keeping mechanism known…
Chimeric Activators and Repressors Define HY5 Activity
Research, The Plant Cell, The Plant Cell: In BriefEarly during seedling development and throughout their lives, plants sense and adapt to their constantly changing environment. Germinated seedlings perceive light which triggers a major developmental switch ultimately leading to photoautotrophic growth. This complex process, referred to broadly as photomorphogenesis,…
Recognizing Plant Physiology authors: Claudio Calvaruso
Plant Physiology, Plant Physiology: Author ProfilesClaudio Calvaruso, first author of Specific Lhc proteins are bound to PSI or PSII supercomplexes in the diatom Thalassiosira pseudonana
Current Position: PhD candidate at the Institut für Molekulare Biowissenschaften, Goethe University of Frankfurt, Germany
Education: PhD candidate at the Goethe…
Recognizing Plant Physiology authors: An-Shan Hsiao
Plant Physiology, Plant Physiology: Author ProfilesAn-Shan Hsiao, first author of An Intrinsically Disordered Protein Interacts with Cytoskeleton for Adaptive Root Growth under Stress
Current Position: Postdoctoral scientist, University of Cambridge, UK
Education:
PhD in Plant Molecular Biology, The University of Hong Kong
M.Sc. in Plant Biology,…
Editorial: Redeploying plant defences (Nature Plants)
Plant Science Research WeeklyWith COVID19 ravaging across the globe, the medicinal value of plants and related research fields e.g., phytochemistry, ethnobotany, etc., is presently in focus. The drug development chain, though extremely promising, is not an immediate solution as it is a long, multistep process. Nature Plants highlights…
Review. Twenty years of CBL-CIPKs: The knowns and the unknowns (Trends Plant Sci)
Plant Science Research WeeklyWhat are the chances that homologs of a vital animal protein could be found in plants, and how much structural and functional similarity would they share? These questions led to the discovery of Calcineurin B-like (CBL) and CBL-interacting protein kinase (CIPK) protein families in plants. In this review,…
Gene balance predicts transcriptional responses immediately following ploidy change in Arabidopsis thaliana (Plant Cell)
Plant Science Research WeeklyThroughout evolutionary time polyploidization events have occurred frequently, increasing the gene copy number (gene dosage) of multiple angiosperms. The gene balance hypothesis proposes that there is selection on gene copy number to maintain the stoichiometric balance between dosage-sensitive genes…
Water lily (Nymphaea thermarum) draft genome reveals variable genomic signatures of ancient cambium losses (bioRxiv)
Plant Science Research WeeklyThe vascular cambium, a meristematic tissue responsible for xylem and phloem production, is an ancestral trait in angiosperms, however, its loss has independently occurred in at least 5 flowering plant lineages. One of such is the Nymphaeales, which includes Nymphaea thermarum, an emergent model for…
Integrated multi-omics framework of the plant response to jasmonic acid (Nature Plants)
Plant Science Research WeeklyJasmonic acid (JA) is involved in fertility, seed emergence and defense. JA perception and signal transduction are well understood, but there is limited understanding of the JA responsive genome regulatory program since only one or a small number of components are usually studied at once. Zander et al.…
Unlocking interspecies grafting (bioRxiv)
Plant Science Research WeeklyPlant grafting is an agricultural technique that joins plant tissues (e.g., the shoot and root) to confer beneficial traits from one plant to another. Although interfamily grafting is difficult in general, Notaguchi et al. found that Nicotiana benthamiana (Nb) has a strong potential to graft with phylogenetically…
Understanding Evening Complex activity (PNAS)
Plant Science Research WeeklyProcesses like photosynthesis and growth follow a well-defined rhythm driven by a 24-h internal clock that is controlled by three principal interacting transcription–translation feedback loops: the morning, central, and evening loops. The Evening Complex (EC), which is active at the end of the day,…
GIGANTEA shapes the photoperiodic rhythms of termomorphogenic growth in Arabidopsis (Mol. Plant)
Plant Science Research WeeklyPlants evolved molecular mechanisms to integrate seasonal changes with developmental programs. For example, warmer temperatures and increasing day-length mark the transition from winter to spring, and trigger flowering. Now, the synchronisation of ambient temperature and photoperiod is perturbed by global…
The circadian clock influences the long-term water use efficiency of Arabidopsis (Plant Physiol.)
Plant Science Research WeeklyThe volume of water required for a given crop yield is largely influenced by the plant's Water Use Efficiency (WUE). Considering that the majority of the water taken up by plants is lost through transpiration, WUE can be improved by modulating stomatal opening. Besides light and temperature, stomatal…
A plant-specific protein, COST1, mediates autophagy to promote drought tolerance (PNAS)
Plant Science Research WeeklyMuch remains to be learned about the sensing and signaling mechanisms controlling growth in response to drought. To dissect how plants control drought via autophagy, Bao et al. found a plant-specific protein, COST1 (CONSTITUTIVELY STRESSED 1) containing a DUF641 (domain of unknown function 641) domain,…
FERONIA controls pectin- and nitric oxide-mediated male–female interaction (Nature)
Plant Science Research WeeklyIn flowering plants, fertilization occurs when a pollen tube, growing down the transmitting tissue, arrives at the ovule, ruptures, and releases its content of sperm cells. The pollen tube is guided towards the ovule by LUREs, small cysteine-rich secreted peptides. Timely rupturing and sperm release…
Ecological strategies begin at germination: Traits, plasticity, and survival in the first four days of plant life ($) (Funct. Ecol.)
Plant Science Research WeeklySeedling establishment is seldom addressed in trait-based ecology. Advocating for the importance of this stage of a plants' life, Larson et al. assessed how functional traits varied in newly emerged seedlings and how this was related to their phylogeny and survival under drought. The authors germinated…
Plant Science Research Weekly: April 3rd
Blog, WWR Full PostEditorial: Redeploying plant defences
With COVID19 ravaging across the globe, the medicinal value of plants and related research fields e.g., phytochemistry, ethnobotany, etc., is presently in focus. The drug development chain, though extremely promising, is not an immediate solution as it is a long,…
Recognizing Plant Physiology authors: Galileo Estopare Araguirang
Plant Physiology, Plant Physiology: Author ProfilesGalileo Estopare Araguirang, first author of The 4 Arabidopsis Choline/Ethanolamine Kinase Isozymes Play Distinct Roles in Metabolism and Development
Current Position: PhD Candidate (Biochemistry) in Prof. Philip Wigge’s Lab under the prestigious International Max Planck Research School- Primary Metabolism…
Plant Pathogens Recruit PI(4,5)P2 to the Interfacial Membrane for Disease Development
Blog, Research, The Plant Cell, The Plant Cell: In a NutshellQin et al. show that PI(4,5)P2 functions as a susceptibility factor for plant disease. Plant Cell https://doi.org/10.1105/tpc.19.00970
By Li Qin and Yangdou Wei. Department of Biology, University of Saskatchewan, Canada
Background: Biotrophic plant pathogens such as powdery mildews and rusts require…
Recognizing Plant Physiology authors: Laurent Mombaerts
Plant Physiology, Plant Physiology: Author ProfilesLaurent Mombaerts, co-first author of Differential effects of day-night cues and the circadian clock on the barley transcriptome
Current Position: 2019 – now Postdoctoral Research Scientist, Systems Control group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg
Education:
2019…
Recognizing Plant Physiology authors: Lukas Müller
Plant Physiology, Plant Physiology: Author ProfilesLukas Müller, co-first author of Differential effects of day-night cues and the circadian clock on the barley transcriptome
Current Position: Patent engineer at a patent law firm in Munich, Germany
Education:
2005 – 2008: Bachelor of Science in agricultural sciences at the Technische Universität…
Recognizing Plant Physiology authors: Yong Yang
Plant Physiology, Plant Physiology: Author ProfilesYong Yang, first author of RNAi-based screen reveals concerted functions of MEKK2 and CRCK3 in plant cell death regulation
Current Position: Research Assistant in the National Navel Orange Engineering Research Center, Gannan Normal University, Jiangxi, China
Research Experience: Joint-Ph.D. in the…
Recognizing Plant Physiology authors: Xinbin Dai
Plant Physiology, Plant Physiology: Author ProfilesXinbin Dai, co-first author of MtSSPdb: the Medicago truncatula Small Secreted Peptide Database
Current Position: Sr. Computational Biologist, Noble Research Institute, Ardmore, Oklahoma, USA
Education: Post-doc in plant biology division at Samuel Roberts Nobel Foundation, United States; PhD in plant…
Recognizing Plant Physiology authors: Clarissa Boschiero
Plant Physiology, Plant Physiology: Author ProfilesClarissa Boschiero, co-first author of MtSSPdb: the Medicago truncatula Small Secreted Peptide Database
Current Position: Postdoctoral Fellow at Noble Research Institute, Ardmore, Oklahoma, USA
Education: Ph.D. and M.Sc. in Animal Science at São Paulo State University, Brazil
Non-scientific Interests:…
Security Notice: This Plant Immunity is under mRNA Surveillance
Research, The Plant Cell, The Plant Cell: In BriefEvery manufacture relies on a quality control process to ensure that the released product is without defects. Similarly, each transcript leaving the eukaryotic nucleus is subjected to mRNA surveillance, which helps to ensure that only flawless mRNAs are directed to translation. For example, transcripts…
Pollen surface replenished: a tapetal flavonoid transporter
Research, The Plant Cell, The Plant Cell: In a NutshellGrunewald et al. identify a flavonoid transporter required for the deposition of flavonol-b-1,2-linked diglycosides to the outer pollen wall in Arabidopsis thaliana. The Plant Cell (2020) https://doi.org/10.1105/tpc.19.00801
By Stephan Grunewald and Thomas Vogt, Leibniz Institute of Plant Biochemistry,…
A Roadmap Toward Large-Scale Genome Editing in Crops
Research, The Plant Cell, The Plant Cell: In BriefIf the planet does not turn to ash before 2050, farmers will need to produce twice as much on roughly the same available arable land to feed the ever-growing world population. But since the Green Revolution of the 1950s and 1960s, progress in crop yield has been incremental. And for good reason: most…
Tools to unravel the mystery of why some tomatoes are hairier than others
Research, The Plant Cell, The Plant Cell: In a NutshellGaldon-Armero et al. present an image resource that can be used to identify natural variation in leaf epidermal development in tomato. The Plant Cell (2020). https://doi.org/10.1105/tpc.20.00127
By Javier Galdon-Armero and Cathie Martin, John Innes Centre, Norwich, UK
Background: Just like our…
Twin-Positive Motifs Function as Specific Plastid Targeting Signals
Research, The Plant Cell, The Plant Cell: In BriefPrecise trafficking of proteins to their proper destinations in the cell, whether to an organelle, a membrane, or the cytoplasm, is required for optimal cellular function. Because most plastid proteins are nucleus-encoded and translated in the cytoplasm, proper targeting and import relies on the presence…
Recognizing Plant Physiology authors: Na Li
Plant Physiology, Plant Physiology: Author ProfilesNa Li, co-first author of Pseudo Response Regulators regulate photoperiodic hypocotyl growth by repressing PIF4/5 transcription
Current Position: Ph.D. candidate in Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China
Education: B.S. in College…
Exosome-Deficient Mutants Reveal Rare Promoter Upstream Transcripts (PROMPTs) in Arabidopsis
Research, The Plant Cell, The Plant Cell: In BriefIn eukaryotes and archaea, protein-coding DNA is transcribed to messenger RNA (mRNA) via a preinitiation complex (PIC) composed of over 100 proteins, among them regulatory proteins, numerous transcription factors, and RNA polymerase II—the enzyme that produces precursor messenger RNA (pre-mRNA). Although…
Recognizing Plant Cell authors: Peng Zhou
The Plant Cell, The Plant Cell: Author ProfilesPeng Zhou, first author of Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions
Current Position: Post-doctoral Associate in Dr. Nathan Springer lab at the University of Minnesota
Education: Ph.D. (Plant Pathology) in University of Minnesota; M.Sc. (Forensic…
RNA polymerase II transcription: cleave to elongate
Research, The Plant Cell, The Plant Cell: In a NutshellAntosz et al. show that the ability of RNA polymerase II to cleave transcripts is required for proper transcription and plant growth.
Wojciech Antosz and Klaus Grasser, University of Regensburg
https://doi.org/10.1105/tpc.19.00891
Background: In plants as in other eukaryotes, nuclear…
Recognizing Plant Physiology authors: Yunliu Zeng
Plant Physiology, Plant Physiology: Author ProfilesYunliu Zeng, first author of Sensory-directed Genetic & Biochemical Characterization of Volatile Terpene Production in Kiwifruit
Current Position: Associate Professor at Huazhong Agricultural University (HZAU), China
Education: Ph.D. and Master of Pomology at HZAU, China; BSc of Horticulture…
Recognizing Plant Cell authors: Lucas McKinnon
The Plant Cell, The Plant Cell: Author ProfilesLucas McKinnon, first author of Membrane Chaperoning of a Thylakoid Protease whose structural stability is modified by the Protonmotive force
Current Position: PhD candidate at University of California, Davis
Education: PhD in Plant Biology (expected March 2020), B.S. in Biological Sciences (UC Davis,…
Review. Signalling pathways underlying nitrogen-dependent changes in root system architecture: from model to crop species (J. Exp. Bot.)
Plant Science Research WeeklyNitrogen (N) is one of the seventeen essential nutrients for a plant to complete its life cycle and is one of the most important determinants of productivity of various crops globally. Nitrate (NO3‑) and ammonium (NH4+) are the major plant-available forms of N. The spatiotemporal heterogeneity of N…
Hornwort genomes (Nature Plants)
Plant Science Research WeeklyA major update in plant genome information is taking place. Two independent groups have published genomes of hornwort species from the Anthoceros genus. Both papers arrive at similar conclusions supporting the model of a single “Setaphyta” clade, with hornworts sister to liverworts and mosses. These…
Roles for CHROMATIN REMODELING 4 in Arabidopsis floral transition (Plant Cell)
Plant Science Research WeeklyThe time at which flowers appear is critical for plant reproductive success. As such, the vegetative to reproductive growth transition is governed by several cues: environmental (photoperiod, temperature) and endogenous (gibberellins, age). Here, Sang et al. used an elegant forward-genetics approach…
The embryo sheath is an anti-adhesive structure that facilitates cotyledon emergence during germination in Arabidopsis ($) (Curr. Biol.)
Plant Science Research WeeklyThe embryo sheath is a glycoprotein structure formed during seed maturation in Arabidopsis thaliana. However, its function and its persistence after germination have been uncertain. Here, Doll et al. examined germination and seedling establishment of krs mutants deficient in the KERBEROS peptide that…
“The secret is how to die!”: CPK1 controls cell death via phosphorylation of ORE1 (Plant Cell)
Plant Science Research WeeklyCell death, like all other cellular processes, is controlled by a highly complex signaling network. A search for the targets of Arabidopsis calcium dependent protein kinase1 (CPK1) by Durian and co-workers has revealed that it phosphorylates ORESARA1 (ORE1), a master regulator of leaf senescence responses,…
How Marchantia polymorpha avoids bug bites (bioRxiv)
Plant Science Research WeeklyPlants took hundreds of million years to evolve from aquatic to land environments. Biotic and abiotic stress adaptation contributed to the transition. In this preprint, Romani et al. elucidated functions of the transcription factor CLASS I HOMEODOMAIN LEUCINE-ZIPPER (C1HDZ) in the early land plant Marchantia…
A feedforward loop controls vascular regeneration and tissue repair through local auxin biosynthesis (Plant Cell)
Plant Science Research WeeklyPlant cells are entrapped in rigid cell walls, so morphogenesis relies on asymmetric cell division (ACD) and positional cues to regulate tissue patterning. The Arabidopsis phloem is a good system to study tissue patterning due to its relatively simple composition: sieve elements (SEs) and companion cells…
Mars1 kinase signaling in the chloroplast unfolded protein response (eLIFE)
Plant Science Research WeeklyIn stressful situations, such as high light and nutrient scarcity, the chloroplast may experience increased proteotoxicity due to a surge in damaging reactive oxygen species. In response, a signal is sent to the nucleus to increase production of many proteins, including proteases and chaperones to help…
The cis-regulatory codes of response to combined heat and drought stress (bioRxiv)
Plant Science Research WeeklyAs sessile organisms, plants must not only respond to a single stress, but multiple stresses at the same time. To understand the DNA regulatory elements that mediate the transcriptional response to heat, drought and combined heat and drought stress, Azodi et al. utilized the known transcription factor…
A plant kinase exploited by a bacterial effector (bioRxiv)
Plant Science Research WeeklyPathogens have evolved a suite of effector proteins that are secreted into plants and aid successful colonization. AvrPtoB is a well-conserved effector of pathogenic Pseudomonas syringae strains that targets multiple plant defense-related proteins and is required for pathogen virulence and bacterial…
Evidence for physiological seed dormancy cycling in the woody shrub Asterolasia buxifolia and its ecological significance in fire‐prone systems ($) (Plant Biol.)
Plant Science Research WeeklyPhysiologically dormant seeds shift between dormancy (i.e., unable to germinate), conditional dormancy (i.e., germination restricted to a narrow set of conditions), and non-dormancy (i.e., germination under a wide range of conditions) in response to environmental changes. This mechanism –known as dormancy…
Plant Science Research Weekly: March 27
WWR Full PostReview. Signalling pathways underlying nitrogen-dependent changes in root system architecture: from model to crop species
Nitrogen (N) is one of the seventeen essential nutrients for a plant to complete its life cycle and is one of the most important determinants of productivity of various crops globally.…
Phosphorus sensing in Chlamydomonas by TORC1 subunit LST8
Research, The Plant Cell, The Plant Cell: In a NutshellCouso et al. developed a TOR kinase assay for Chlamydomonas and show how subunit LST8 senses phosphorus availability and modulates cell growth. Plant Cell https://doi.org/10.1105/tpc.19.00179
By I. Couso, M.E. Pérez-Pérez, M.M. Ford, E. Martínez-Force, L.M. Hicks, J.G. Umen, and J.L. Crespo.
Background:…
Cell-Specific Light Response in C4 Photosynthesis
Plant Physiology, Plant Physiology: On The InsideIn C4 species, the expression of photosynthesis genes is partitioned such that leaf mesophyll and bundle sheath cells accumulate different components of the photosynthetic pathway. The expression of nucleus-encoded photosynthesis genes is modulated both by photoreceptor activity and by a network of…
The Fate of Acetate During Hypoxia
Plant Physiology, Plant Physiology: On The InsideUnder hypoxia, Acetyl-CoA Synthetase (ACS), an enzyme that synthesizes acetyl CoA, recovers carbon that would otherwise be lost from the plant as ethanol. Plastid-localized ACS metabolizes cellular acetate and contributes to the de novo biosynthesis of fatty acids and Leu. On the other hand, a peroxisome-localized…
Autophagy Maintains Zinc Pools under Zinc Deficiency
Plant Physiology, Plant Physiology: On The InsideZinc (Zn) is a metallic element that is essential for all living organisms. Zn serves as a catalytic or structural cofactor in a large number of enzymes including alcohol dehydrogenase, superoxide dismutase (SOD), and regulatory proteins such as transcription factors containing Z-finger domains. Accordingly,…
MYB Transcription Factors Regulate Secondary Metabolism
Plant Physiology, Plant Physiology: On The InsideSecondary cell walls play important roles in providing long-distance water transport, mechanical support, and plant defense. The main components of secondary cell walls are cellulose, hemicellulose, and lignin. The synthesis of lignin monomers involves the phenylpropanoid pathway, which is also shared…
The Arabidopsis GPT1 transporter is Essential in Both Plastids and Peroxisomes
Research, The Plant Cell, The Plant Cell: In a NutshellBaune et al. explore the roles of a metabolite transporter in two different locations in a single cell. Plant Cell https://doi.org/10.1105/tpc.19.00959
By Marie-Christin Baune, Hannes Lansing, Antje von Schaewen
University of Münster, Germany
Background: The oxidative pentose-phosphate…
Temperature Signaling in Guard Cells
Plant Physiology, Plant Physiology: On The InsideThe elucidation of plant temperature signaling networks is confounded by the fact that commonly measured physiological outputs of temperature change (e.g., stem elongation and flowering time) can be temporally and spatially distant from the temperature perception event, requiring intercellular, intertissue,…
Cold-Induced Proteomic Changes in the Chloroplast Envelope
Plant Physiology, Plant Physiology: On The InsideAs a cold-hardy species, Arabidopsis (Arabidopsis thaliana), is a useful model for the investigation of the molecular and physiological mechanisms underlying cold acclimation in plants. Chloroplasts harbor the enzymatic machinery required for photosynthetic CO2 fixation, starch production, nitrite and…
The Way Out: A Transcriptionally Unique Group of Endosperm Cells Implicated in Nutrient Export to the Embryo
Research, The Plant Cell, The Plant Cell: In BriefSuccessful development of the maize (Zea mays) kernel requires proper nutrient transport and signaling among its genetically distinct components: the embryo that gives rise to the next generation, the endosperm that nourishes the embryo, and the maternal tissues that surround the embryo and the endosperm…
Regulation of Carotenoid Pigmentation in Flowers
Research, The Plant Cell, The Plant Cell: In a NutshellStanley et al. Identify a protein in the model plant monkeyflower (Mimulus) required for chromoplast development and carotenoid biosynthesis. Plant Cell https://doi.org/10.1105/tpc.19.00755
By Lauren Stanley and Yao-Wu Yuan, University of Connecticut
Background: Carotenoids are yellow, orange,…
The R-loop: An Additional Chromatin Feature for Gene Regulation in Arabidopsis
Research, The Plant Cell, The Plant Cell: In BriefR-loops are three-stranded nucleic acid structures composed of a DNA-RNA hybrid and a displaced single-stranded DNA. R-loops are stable structures as they form an intermediate A/B conformation of the RNA-DNA hybrid that is more stable than the B form of dsDNA or A form of the dsRNA. Recent evidence reveals…
SHORTROOT coordinates phloem development via two pathways
Research, The Plant Cell, The Plant Cell: In a NutshellKim et al. examine how plants coordinate sieve element and companion cell development.
Plant Cell https://doi.org/10.1105/tpc.19.00455
By Hyoujin Kim1 and Ji-Young Lee1,2, School of Biological Sciences, College of Natural Science, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826,…
Update: How plants sense and respond to stressful environments (Plant Phys)
Plant Science Research WeeklyA longstanding question in plant science is how plants “know” that they are under threat. The identification of cell-surface receptors that identify conserved pathogen patterns sheds some light on biotic stress perception, but what about abiotic stresses such as excessive heat or drought? Lamers…
Perspective: Multiscale computational models for crop improvement (Plant J)
Plant Science Research WeeklyThroughout the plant science community, the use of computational or in silico analyses which precede traditional studies are gaining traction to identify research opportunities. Multiscale computational models are those which assimilate data from all biological system levels from gene to ecosystem. Benes…
Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade (Nature Comms.)
Plant Science Research WeeklyTranscription factors (TFs) and their genome-wide targets form gene regulatory networks that allow organisms to respond to stimuli. However, conventional biochemical assays only identify a subset of the TF-target interactions. In this paper, Alvarez et al. elucidate the genetic network of NIN-LIKE PROTEIN…
DRT111/SFPS splicing factor controls ABA sensitivity during seed development and germination (Plant Physiol)
Plant Science Research WeeklyAbscisic acid (ABA) acts on different plant physiological and developmental processes by quite complex mechanisms. In fact, some of these processes interact with light signaling and some are controlled by alternative splicing. In this paper, Punzo et al. show that DRT111 – a splicing factor previously…
A molecular link between photoreceptors and jasmonates (Nature Plants)
Plant Science Research WeeklyPlants balance their efforts on growth and defense depending on the situation. Competitive conditions signaled by the low ratios of red (R) to far-red (FR) light suppress defense responses mediated by the plant hormone jasmonate (JA), presumably for allocating more resources to promote plant growth.…
Integration of light signaling with endogenous developmental pathway to regulate flowering (Mol. Plant)
Plant Science Research WeeklyResponse to changing environmental conditions is key for plant reproductive success. Previous studies have implicated FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED IMPAIRED RESPONSE1 (FAR1) as inhibitors of flowering in phytochrome A signaling pathway. miR156-targeted SQUAMOSA PROMOTER BINDING PROTEIN…
The M3Ks, a missing component discovered in the early ABA core signaling module (Nature Comms)
Plant Science Research WeeklyAbout a decade ago, the ABA receptors [PYR-ABACTIN RESISTANCE (PYR/PYL)/REGULATORY COMPONENT OF ABA RECEPTOR (RCAR)] were discovered, establishing the PYL-PP2C-SnRK2s core signalling module, in which ABA-binding to PYR/PYL receptors inhibits PP2C phosphatases, leading to activation of SnRK2 kinases,…
A feedforward loop controls vascular regeneration and tissue repair through local auxin biosynthesis (Development)
Plant Science Research WeeklyPlants are constantly exposed to biotic and biotic stresses that can cause tissue damage, and, as a response, plants have evolved remarkably plastic regenerative mechanisms in response to wounding. Although some genes required for regeneration have been identified in the Arabidopsis root context, most…
MicroRNAs and the control of stomatal development (PNAS)
Plant Science Research WeeklyStomata mediate critical functions in plant life: gas exchange, water loss, and some environmental responses. At the molecular level, some bHLH transcription factors and a MAP-kinase pathway control a series of asymmetric and symmetric cell divisions of stomatal stem cells to form a guard cell. In…
Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae (eLIFE)
Plant Science Research WeeklyLife cycles in sexually reproducing plants and algae alternate between diploid (sporophytic) and haploid (gametophytic) generations. The haploid gametophyte produces gametes that mate to generate the diploid sporophyte, which in turn undergoes meiosis to generate haploid spores. Development must be coordinated…
Formation of NB-LRR receptor ZAR1 resistome in vivo ($) (Mol. Plant)
Plant Science Research WeeklyTo fight against pathogenic microbes,plants have evolved intracellular nucleotide-binding, leucine-rich repeat (NB-LRR) receptors, known as NLRs, to monitor pathogen effector proteins and trigger robust immune responses. ZAR1 is a canonical NLR, and a forms a multimeric resistosome complex in vitro…
The Q-System as a synthetic transcriptional regulator in plants (Front. Plant Biol.)
Plant Science Research WeeklyThe ability to reliably induce a transgene has greatly enhanced the study of plant biology. Various chemical inducible system have worked robustly in plants, but plant synthetic biology is still lacking an efficient orthogonal (from outside) inducible system where multiple genes can be controlled at…
Plant Science Research Weekly: March 20
Blog, WWR Full PostUpdate: How plants sense and respond to stressful environments
A longstanding question in plant science is how plants “know” that they are under threat. The identification of cell-surface receptors that identify conserved pathogen patterns sheds some light on biotic stress perception, but what…
A Closer Look at Acyl-ACPs in Lipid Metabolism
Research, The Plant Cell, The Plant Cell: In BriefAcyl lipids are a wide range of compounds that have diverse functions in membrane synthesis, energy storage, and signal transduction. Fatty acids are key building blocks of acyl lipids that are synthesized by the fatty acid synthase complex via sequential condensation of two-carbon units to reach lengths…
To Catch Crop Genes in Batch
Research, The Plant Cell, The Plant Cell: In a NutshellLiu et al. demonstrate an integration of massive genetic mapping and high-throughput targeted mutagenesis to accelerate functional gene identification in maize. The Plant Cell (2020) https://doi.org/10.1105/tpc.19.00934
By Hai-Jun Liu & Jianbing Yan, National Key Laboratory of Crop Genetic Improvement,…
Say “Ah!” The Right Amounts of Brassinosteroids and Hydrogen Peroxide Open the “Mouths” of Plant Leaves
Research, The Plant Cell, The Plant Cell: In BriefStomata, from the Greek “mouths,” are tiny pores in the epidermis of many plant aerial tissues that are “fed” carbon dioxide for making sugar. But plants also lose water through these same pores via transpiration. Stomatal aperture regulation in response to environmental cues is therefore of…
HY5 Activates Rather Than Represses its Direct Targets, Including its Negative Regulator SPA1
Research, The Plant Cell, The Plant Cell: In a NutshellBurko et al. carry out detailed phenotypic and molecular analyses of constitutive activator and repressor HY5 fusion proteins to identify its direct targets. Plant Cell https://doi.org/10.1105/tpc.19.00772
Background: Plants are highly responsive to environmental factors, and differences in light,…
Keep cool and open up: temperature-induced stomatal opening
Plant Physiology, Plant Physiology: News and Views, ResearchWhen air temperatures rise above the comfortable level, plants initiate a cooling mechanism to prevent heat stress. High ambient temperatures induce a specific set of growth responses, termed thermomorphogenesis, which includes enhanced hypocotyl and petiole elongation, and leaf hyponasty (reviewed by…
Round Effects: Tasg-D1 is Responsible for Grain Shape in Indian Dwarf Wheat
Research, The Plant Cell, The Plant Cell: In BriefWheat (Triticum spp.), one of the oldest cultivated cereals, is a major food crop grown in many regions with temperate climates. At present, wheat is grown over a wider area than any other commercial crop. Given its importance, extensive marker-assisted breeding of wheat varieties has been undertaken…
Protein Delivery Address Codes Are Part of the Circuitry Adjusting Tissue-Specific Plastid Proteomes
Research, The Plant Cell, The Plant Cell: In a NutshellChu et al. demonstrate that a special address code is required for efficient protein import into root plastids. Plant Cell https://doi.org/10.1105/tpc.19.00702
By Hsou-min Li, Institute of Molecular Biology, Academia Sinica, Nankang, Taipei 11529, Taiwan
Background: Chloroplasts are the most famous…
A Tale of Two Isoforms: Calcium-dependent Inhibition of SnRK2 by SnRK-Calcium-binding Sensor
Plant Physiology, Plant Physiology: News and Views, ResearchMagdalena Julkowska
[email protected]
Reacting to the environment requires not only activating signaling cascades but also modulating the activity of individual components in a context- and time-dependent manner. For example, under non-stress conditions protein phosphatases 2C…
Family dynamics within the seed: Identification of new cell types in maize endosperm
Research, The Plant Cell, The Plant Cell: In a NutshellDoll et al. examine the structure of maize seeds and identify a distinct cell type in the endosperm next to the embryo. https://doi.org/10.1105/tpc.19.00756
Nicolas M. Doll, Peter M. Rogowsky and Thomas Widiez
Laboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB…
Regulation of Protein Synthesis under Abiotic Stress
Research, The Plant Cell, The Plant Cell: In a NutshellLokdarshi et al. demonstrate that cytosolic protein synthesis under abiotic stress is regulated by the GCN2 kinase-eIF2a module under the command of reactive oxygen species originating from chloroplasts. Plant Cell https://doi.org/10.1105/tpc.19.00751
By Ansul Lokdarshi and Albrecht von Arnim (University…
Opinion: We aren’t good at picking candidate genes, and it’s slowing us down (COPB)
Plant Science Research WeeklyRecent advances have facilitated the generation of huge phenotypic datasets from plant populations. However, the means to inexpensively organise such datasets to unequivocally determine causal genes has evaded researchers. Here, Baxter discusses how human bias when selecting candidate genes is compromising…
Update: Twenty years of progress in physiological and biochemical investigation of RALF peptides (Plant Physiol)
Plant Science Research WeeklyRALFs (Rapid Alkalinzation Factors) were one of the first types of signaling peptides identified in plants, and as their name suggests they were shown to induce an increase in the pH (i.e., alkalinization) of culture medium, through inducing phosphorylation of a plasma-membrane proton pump. There are…
Review: Pathways to sex determination in plants: How many roads lead to Rome? (COPB)
Plant Science Research WeeklyAlthough most angiosperms produce both male and female gametes, in some species an individual is either male or female, a property known as dioecy (literally, two houses). Dioecy exists in ~6% of angiosperms and is hypothesized to have evolved several times independently. While much research has been…
Opinion. Anthropogenic seed dispersal: Rethinking the origins of plant domestication (Trends Plant Sci)
Plant Science Research WeeklyStudies regarding the development of agriculture have started to integrate a plant evolutionary perspective. In this context, Spengler explores how changes in seed dispersal allowed plant domestication during the first half of the Holocene (e.g., more than 5000 years ago). He starts by redefining domestication…
Phenome analysis in multiple combinations of G-protein alpha and beta in Arabidopsis (Plant J)
Plant Science Research WeeklyHeterotrimeric G-proteins are implicated in a large number of signalling pathways. As their name indicates, they are composed of three different subunits, Gα, Gβ, and Gγ. The Arabidopsis genome has genes encoding four Gα, one Gβ and two Gγ protein subunits, as compared to the multiple members that…
Transcription factor NF‐YB21 positively regulate the root growth in Populus (New Phytol)
Plant Science Research WeeklyNuclear factor Y (NF-Y) proteins are heterotrimeric transcription factors made up of A, B and C subunits that exist in higher eukaryotes. Previous work has implicated NF-Ys in root growth. Recently, Zhou et al. isolated a root-specific NF-Y family transcription factor in Populus designated as PdNF-YB21.…
In Arabidopsis, low blue light enhances phototropism by releasing cryptochrome 1-mediated inhibition of PIF4 expression (bioRxiv)
Plant Science Research WeeklyA plant’s light environment is complex and variable, but through different photoreceptors the plant can perceive its environment and grow appropriately. For example, plants respond differently in the presence of dense vegetation (leading to a low red to far-red light ratio due to far-red light being…
Heat tolerance regulated by an ancient jasmonate signaling pathway (Curr. Biol)
Plant Science Research WeeklyJasmonate responses are regulated not only by the well-studied pair of the bioactive hormone jasmonoyl-isoleucine (JA-Ile) and the receptor COI1, but also the cyclopentenone OPDA and the JA-Ile precursor dn-OPDA can activate jasmonate signaling. However, the OPDA/dn-OPDA signaling and their physiological…
Allelic mutations in the Ripening-inhibitor (RIN) locus generate extensive variation in tomato ripening ($) (Plant Physiol)
Plant Science Research WeeklyRipened fruits attract animals to eat and disperse seeds, allowing propagation. Slowing down the fruit ripening process is often used commercially to decrease damage during transport and extend shelf life. Molecular (increased pigment, aroma, and flavor) and physiological (softened flesh) changes of…
Disturbance of floral color pattern by activation of an endogenous virus in aged petunia plants (Plant J)
Plant Science Research WeeklyThe red color of petunia petals is due to the presence of anthocyanin pigments, produced in part through the action of the chalcone synthase enzyme. In the “Red Star”’ variety, expression of the CHS-A gene encoding chalcone synthase is silenced in cells around the midvein through post-transcriptional…
An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages ($) (Nature Plants)
Plant Science Research WeeklyIt’s widely thought that plants acquired the ability to live on land thanks to a little help from their friends, specifically arbuscular mycorrhizal fungi. Even now, most land plants form mutually beneficial associations with fungi or bacteria, and these often involve the plant cells acting as hosts…
Plant Science Research Weekly: March 13
Blog, WWR Full PostOpinion: We aren’t good at picking candidate genes, and it’s slowing us down
Recent advances have facilitated the generation of huge phenotypic datasets from plant populations. However, the means to inexpensively organise such datasets to unequivocally determine causal genes has evaded researchers.…
The Cold Never Bothered Me Anyway: DELLA-Interacting GROWTH REGULATING FACTORS Mediate Plant Growth in Cold Stress
Research, The Plant Cell, The Plant Cell: In BriefThe gibberellin (GA) hormone signaling pathway is a key regulator of major plant developmental processes such as seed germination, cell elongation, and flowering time. The influence of GA is mediated by DELLA repressor proteins which, in the absence of GA, inhibit the activity of transcription factors.…
A Closer Look at the Fatty Acid Assembly Line
Research, The Plant Cell, The Plant Cell: In a NutshellNam et al. describe a general method to analyze and quantify the fatty acid biosynthetic profile of any sample with the use of an aspartate protease and LC-MS/MS. Plant Cell https://doi.org/10.1105/tpc.19.00954
By Lauren M. Jenkinsa,b, Jeong-Won Nama, and Doug K. Allena,b (aDonald Danforth Plant…
The Case of Virus-Induced Plant Autophagy: Cui Bono?
Research, The Plant Cell, The Plant Cell: In BriefPlant-viral interactions, like other plant-pathogen interactions, involve a molecular arms race. When plants mount a defense response against an unwanted viral invasion, the invaders eventually evolve mechanisms to thwart or sabotage the defense response, thus placing plants back under pressure to evolve…
Recognizing Plant Cell authors: Stephan Grunewald
The Plant Cell, The Plant Cell: Author ProfilesStephan Grunewald, first author of The Tapetal Major Facilitator NPF2.8 is required for Accumulation of Flavonol Glycosides on the Pollen Surface in Arabidopsis thaliana
Current Position: PhD student, Department of Cell and Metabolic Biology, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany
Education:…
Recognizing Plant Cell authors: Zhuqing Zhou
The Plant Cell, The Plant Cell: Author ProfilesZhuqing Zhou, co-first author of Specific Recruitment of Phosphoinositide Species to the Plant-Pathogen Interfacial Membrane Underlies Arabidopsis Susceptibility to Fungal Infection
Current Position: Professor, Cell and Developmental Biology, College of Life Science and Technology, Huazhong Agricultural…
Recognizing Plant Cell authors: Li Qin
The Plant Cell, The Plant Cell: Author ProfilesLi Qin, co-first author of Specific Recruitment of Phosphoinositide Species to the Plant-Pathogen Interfacial Membrane Underlies Arabidopsis Susceptibility to Fungal Infection
Current Position: Ph.D. candidate in the lab of Prof. Yangdou Wei, Department of Biology, University of Saskatchewan
Education:…
Brassinosteroids and H2O2 Regulate Guard Cell Starch Metabolism
Research, The Plant Cell, The Plant Cell: In a NutshellLi et al. demonstrate that the BR and H2O2 interdependently promote guard cell starch degradation and stomatal opening in Arabidopsis.
Plant Cell https://doi.org/10.1105/tpc.19.00587
By Jin-Ge Li, Min Fan, Wenbo Hua, Yanchen Tian, and Ming-Yi Bai
The Key Laboratory of Plant Development and…
Recognizing Plant Physiology authors: Jinwu Deng
Plant Physiology, Plant Physiology: Author ProfilesJinwu Deng, first author of The calcium sensor CBL2 and its interacting kinase CIPK6 are involved in plant sugar homeostasis via interacting with tonoplast sugar transporter TST2
Current position: Ph.D. student, College of Plant Science and Technology, Huazhong Agricultural University
Education:…
En Garde: CRK2 Pre-associates with RBOHD and Regulates ROS Production
Research, The Plant Cell, The Plant Cell: In BriefReactive oxygen species (ROS) production is a common early response to biotic or abiotic stresses. While an important messenger in both plants and animals, unrestricted accumulation of ROS has deleterious consequences such as cell death. Thus, the production of ROS is tightly controlled. A main component…
Recognizing Plant Direct authors: Jon Cody
Plant Direct, Plant Direct: Author ProfilesJon Cody, first author of Site-Specific Recombinase Genome Engineering Toolkit in Maize
Current Position: Postdoctoral Associate, University of Minnesota
Education: PhD, Division of Biological Sciences, University of Missouri – Columbia
Non-scientific Interests: skateboarding, PC gaming and…
Recognizing Plant Cell authors: Alice Pajoro
The Plant Cell, The Plant Cell: Author ProfilesAlice Pajoro, first author of Mutagenesis of a Quintuple Mutant Impaired in Environmental Responses Reveals Roles for CHROMATIN REMODELING4 in the Arabidopsis Floral Transition
Current Position: post-doctoral researcher
Education: PhD in molecular biology at Wageningen University, the Netherlands;…
The protein phosphatase PP2A-B’γ takes control over salicylic acid to suppress defense and premature senescence
Plant Physiology, Plant Physiology: News and Views, ResearchAmna Mhamdi
Ghent University, Department of Plant Biotechnology and Bioinformatics, and VIB Center for Plant Systems Biology, 9052 Ghent, Belgium
Address correspondence to [email protected]
Long thought to be unselective and often referred to as "housekeeping" enzymes, type 2A Protein…
Breaking Water-wise Photosynthesis
Research, The Plant Cell, The Plant Cell: In a NutshellBoxall et al. explore the effects of silencing phosphoenolpyruvate carboxylase in a Crassulacean acid metabolism species. Plant Cell https://doi.org/10.1105/tpc.19.00481
By Susie Boxall and James Hartwell
Background: Severe droughts and high temperatures are becoming more frequent due to climate…
Recognizing Plant Cell authors: Jing Zhou
The Plant Cell, The Plant Cell: Author ProfilesJing Zhou, co-first author of SHORTROOT-Mediated Intercellular Signals Coordinate Phloem Development in Arabidopsis Roots
Current position: Scientist, Technology Development at Elo Life Systems
Education: Ph.D. in Developmental Biology and Molecular Biology at Cornell University, M.Sc. in Biological…
Recognizing Plant Cell authors: Hyoujin Kim
The Plant Cell, The Plant Cell: Author ProfilesHyoujin Kim, co-first author of SHORTROOT-Mediated Intercellular Signals Coordinate Phloem Development in Arabidopsis Roots
Current Position: combined Masters and Doctoral course student, Seoul National University, Republic of Korea
Education: B.Sc. Genetic engineering, University of Kyung-Hee,…
Recognizing Plant Physiology authors: Román Ramos Báez
Plant Physiology, Plant Physiology: Author ProfilesRomán Ramos Báez, first author of A synthetic approach allows rapid characterization of the maize nuclear auxin response circuit
Current Position: PhD Candidate, Department of Biology, University of Washington, Seattle, Seattle, WA, United States of America
Education: B.S. Biochemistry and Biotechnology,…
Telling Footprints: Exon Junction Complexes Mark Targets of Nonsense- and miRNA-Mediated mRNA Decay
Research, The Plant Cell, The Plant Cell: In BriefRNA degradation mechanisms control the quality and quantity of mRNAs and are crucial for plant cell viability. The major pathways for RNA degradation involve 5’-3’ or 3’-5’ exonucleolytic cleavage by exoribonucleases or the exosome complex, respectively, whereas targets of miRNAs are cleaved…
Recognizing Plant Cell authors: Marie-Christin Baune
The Plant Cell, The Plant Cell: Author ProfilesMarie-Christin Baune, first author of The Arabidopsis Plastidial Glucose-6-phosphate Transporter GPT1 is Dually Targeted to Peroxisomes via the Endoplasmic Reticulum
Current Position: Post-doctoral researcher at German Institute of Food Technology
Education: BSc and MSc in Plant Biotechnology from…
SUMO reins in an overactive cell cycle
Research, The Plant Cell, The Plant Cell: In a NutshellLin et al. investigate how SUMOylation of a ribosomal protein affects cell size-mediated cell cycle control in Chlamydomonas reinhardtii.
Plant Cell https://doi.org/10.1105/tpc.19.00301
By Yen-Ling Lin1,2,3 and Su-Chiung Fang1,2
1Biotechnology Center in Southern Taiwan, Academia Sinica, Tainan,…
The Rules of Attachment: REC8 Cohesin Connects Chromatin Architecture and Recombination Machinery in Meiosis
Research, The Plant Cell, The Plant Cell: In BriefDuring cell division, accurate tethering and release of newly replicated sister chromatids is essential for ensuring that each daughter cell receives a full set of chromosomes. To accomplish this, cells use cohesins that act as the “chromosomal glue”. These cohesins are a group of ring-shaped protein…
CDGK1 maintains class I meiotic recombination precursors
Research, The Plant Cell, The Plant Cell: In a NutshellNibau et al. explore the role of a cyclin-dependent kinase in meiosis.
Plant Cell https://doi.org/10.1105/tpc.19.00942
By Candida Nibau, Andrew Lloyd, Dylan Phillips and John Doonan
IBERS, Aberystwyth University, UK
Background: Cyclin-dependent kinases are involved in many cellular…
What Happens after Manuscript Submission?
Blog, Plantae Webinars, Pubs Pages, Science Communication, Webinars0 Comments
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What Happens after Manuscript Submission?
Recorded Friday, March 6, 2020
About This Webinar
In one of our recent webinars, Mary Williams discussed how to prepare your manuscript for publication. But what happens next?
In the second webinar of this series, Jon Munn, Jennifer Regala,…
Review: How mycorrhizal associations drive plant population and community biology ($) (Science)
Plant Science Research WeeklyGreat strides have been made in discovering the molecular players that allow plants and mycorrhizal fungi to establish their symbiosis. Here, Tedersoo et al. look beyond the single plant and address how these associations affect plant communities. Notably, they review the functions of the four evolutionarily…
Review: Mechanisms regulating PIF transcription factor activity at the protein level ($) (Physiol. Plant.)
Plant Science Research WeeklyAbsorption of red and far-red light by phytochromes dramatically affects plant development, and many of these effects are mediated by the PIF (PHYTOCHROME INTERACTING FACTOR) family of transcription factors. Favero reviews the many ways that PIF activity is regulated beyond through their interactions…
High-throughput CRISPR/Cas9 mutagenesis streamlines trait gene identification in maize (Plant Cell)
Plant Science Research WeeklyMaize has provided some fascinating mutants and developmental insights, but its genomic complexity has made it more difficult (for example as compared to rice) to identify agronomically important genes. Liu et al. describe a new high-throughput method to integrate forward- and reverse-genetics to identify…
Base-editing-mediated artificial evolution of OsALS1 in planta to develop novel herbicide-tolerant rice germplasms (Mol. Plant)
Plant Science Research WeeklyThe trait of herbicide tolerance allows farmers to use chemical means to eliminate weed competitors. Acetolactate synthase (ALS) is an enzyme targeted by more than 50 different herbicides. In order to generate novel herbicide tolerance traits, Kuang et al. used a base-editing artificial evolution approach,…
Structural basis of unidirectional energy transfer in Porphyridium purpureum phycobilisome (Nature)
Plant Science Research WeeklyCyanobacteria and red algae employ phycobilisomes (PBSs) as light-harvesting systems to adapt to fluctuating environments. PBSs are composed of phycobiliproteins, linker proteins and chromophores. Ma et al. used cryo-EM to determine the 2.82 Å structure of the very large (14.7-megadalton, 706 protein…
Chimeric activators and repressors define HY5 activity and reveal a light-regulated feedback mechanism (Plant Cell)
Plant Science Research WeeklyPlants take cues from the environment and decide when and how to regulate growth. When light is limiting, etiolated growth allows plants to reach the soil surface and gain access to light. After light perception, plants de-etiolate and go through a series of morphological and genetic changes. HY5 is…
Two MYB proteins in a self-organizing activator-inhibitor system produce spotted pigmentation patterns (Curr. Biol.)
Plant Science Research WeeklyThe questions of how patterns are formed is one of the oldest in biology, and even considered by the famous mathematician Alan Turing, who proposed that reaction-diffusion (RD) models underly de novo pattern formation. Briefly, a reaction that takes place in one place sends a signal that leads to a different…
Hybrid autoimmunity and a plant resistosome complex ($) (Cell Host Microbe)
Plant Science Research WeeklyHybrid necrosis occurs when the progeny of a cross between two different plants show widespread cell death. It can be caused by autoactivation of nucleotide-binding and leucine rich repeat domain (NLR) proteins, intracellular immune receptors that play a central role in plant resistance to diverse pathogens.…
Mildew Locus O facilitates colonization by arbuscular mycorrhizal fungi in angiosperms (New Phytol.)
Plant Science Research WeeklyIn plants, disease resistance genes typically act in a dominant way – the presence of a resistance allele, even a single copy, is enough to confer resistance. The barley gene Mildew Resistance Locus O (MLO1) is different, as it acts in a recessive way; loss-of-function mlo1 plants are resistant to…
Some mycoheterotrophic orchids depend on carbon from deadwood: novel evidence from a radiocarbon approach (New Phytol.)
Plant Science Research WeeklyA mycoheterotrophic ("fungal-other-eating") plant takes carbon nutrients from a fungus, but as fungi are not themselves photosynthetic, the (ectomycorrhizal) fungus must get its carbon from somewhere, usually a plant. Thus the typical flow of carbon goes from autotrophic photosynthesizing plant to fungus…
Community diversity outweighs effect of warming on plant colonization ($) (Global Change Biol.)
Plant Science Research WeeklySeveral studies have addressed growing concerns regarding increases in exotic plant colonization of communities in response to a warming climate. However, both abiotic (e.g., warming climate) and biotic (e.g., changes in community diversity) shifts can be simultaneous results of warming and both can…
Plant Science Research Weekly: March 7
Blog, WWR Full PostReview: How mycorrhizal associations drive plant population and community biology ($)
Great strides have been made in discovering the molecular players that allow plants and mycorrhizal fungi to establish their symbiosis. Here, Tedersoo et al. look beyond the single plant and address how these associations…
Viral proteins activate autophagy
Research, The Plant Cell, The Plant Cell: In a NutshellIsmayil et al. identify a virus that activates autophagy and reveal the underlying mechanism.
Plant Cell https://doi.org/10.1105/tpc.19.00759
By Asigul Ismayil, MOE Key Laboratory of Bioinformatics, Center for Plant Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences,…
Pol IV Function is Differentially Essential within the Brassicaceae
Research, The Plant Cell, The Plant Cell: In BriefAt least five RNA polymerases (Pol I to Pol V) are known to exist in plant cells. Pol IV produces short transcripts that are converted into double-stranded RNAs by RNA-dependent RNA polymerase 2 (RDR2) and processed into 24-nucleotide (nt) small interfering RNAs (siRNAs) by DICER-LIKE 3 (DCL3). These…
Attacking the front and the rear – the elaborate control of reactive oxygen species production
Research, The Plant Cell, The Plant Cell: In a NutshellKimura et al. reveal how phosphorylation of a key enzyme activates reactive oxygen species production. Plant Cell https://doi.org/10.1105/tpc.19.00525
Sachie Kimuraa,b, Michael Wrzaczeka
aOrganismal and Evolutionary Biology Research Programme, Viikki Plant Science Centre, Faculty of Biological…
When to Sleep? CHT7 is Critical for Nutrient-dependent Quiescence in Chlamydomonas
Research, The Plant Cell, The Plant Cell: In BriefTo survive nutrient scarcity, unicellular organisms establish a reversible quiescent state in which cells cease growth and division and switch metabolism to an energy-conserving mode. When nutrients become available again, cells exit from quiescence and resume growth and division. The mechanistic details…
Persulfidation-controlled guard cell ABA signaling
Research, The Plant Cell, The Plant Cell: In a NutshellShen et al. explore the role of H2S signaling and the reversible modification persulfidation in guard cell signaling. https://doi.org/10.1105/tpc.19.00826
Yanjie Xie; Laboratory Center of Life Sciences, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, PR China.
Background:…
Paving the way for C4 evolution: study of C3-C4 intermediate species in grasses
Plant Physiology, Plant Physiology: News and Views, ResearchC4 photosynthesis originated as an adaptation to low atmospheric CO2 concentrations 30-35 million years ago (Sage, 2016). Although accounting for only 3% of the vascular plants on earth, C4 plants contribute 25% of terrestrial photosynthesis (Westhoff and Gowik, 2010), thus providing a highly desirable…
Recognizing Plant Direct authors: Daniel Santana de Carvalho
Plant Direct, Plant Direct: Author ProfilesDaniel Santana de Carvalho, first author of IsoSeq transcriptome assembly of C3 panicoid grasses provides tools to study evolutionary change in the Panicoideae
Current Position: Postdoctoral researcher, Bioinformatics Interdisciplinary Graduate Program, Federal University of Minas Gerais, Brazil
Education:…
Recognizing Plant Physiology authors: Erica LaMontagne
Plant Physiology, Plant Physiology: Author ProfilesErica LaMontagne, co-first author of EPSIN1 modulates the plasma membrane abundance of FLAGELLIN SENSING2 for effective immune responses
Current Position: Research Scientist at Elemental Enzymes Ag & Turf, LLC
Education: PhD in Biochemistry from University of Missouri-Columbia (2013 - 2018);…
Recognizing Plant Physiology authors: Carina Collins
Plant Physiology, Plant Physiology: Author ProfilesCarina Collins, co-first author of EPSIN1 modulates the plasma membrane abundance of FLAGELLIN SENSING2 for effective immune responses
Current Position: Assistant Professor of Chemistry & Physics at Drury University
Education:
Post-doc in botany department University of Wisconsin Madison
Ph.D.…
Recognizing Plant Cell authors: Yuan Xie
The Plant Cell, The Plant Cell: Author ProfilesYuan Xie, co-first author of Photosynthetic Phosphoribulokinase Structures: Enzymatic Mechanisms and the Redox Regulation of the Calvin-Benson-Bassham Cycle
Current Position: Postdoctoral Associate in Department of Biophysics, Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University…
Recognizing Plant Cell authors: Ailing Yu
The Plant Cell, The Plant Cell: Author ProfilesAiling Yu, co-first author of Photosynthetic Phosphoribulokinase Structures: Enzymatic Mechanisms and the Redox Regulation of the Calvin-Benson-Bassham Cycle
Current Position: Ph.D. candidate in National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing,…
IbBBX24 Enhances Fusarium Wilt Resistance in Sweet Potato
Research, The Plant Cell, The Plant Cell: In a NutshellZhang et al. identify a target gene for enhancing pathogen resistance without yield penalty in sweet potato. Plant Cell https://doi.org/10.1105/tpc.19.00641
Background: Sweet potato is an economically important root and tuber crop that is widely used as an industrial and bioenergy resource worldwide…
Know Your Roots: A Transcriptomic Exploration of Key Life History Traits in the Model Lycophyte Selaginella moellendorffii
Research, The Plant Cell, The Plant Cell: In BriefLand plants (embryophytes) evolved from a freshwater charophycean algal predecessor over 450 million years ago and have since separated into the diversity of plant lineages observed today. A key factor in the expansion of plant life on land was the evolution of rooting structures and a vasculature that…
Silencing Transposons is Important for Pollen Development in Capsella
Research, The Plant Cell, The Plant Cell: In a NutshellWang et al. reveal that viable pollen formation in Capsella requires the function of a DNA-dependent RNA polymerase. Plant Cell https://doi.org/10.1105/tpc.19.00938
Background: Transposons, or “jumping genes”, are kept silent by a plant-specific pathway that starts with DNA-dependent RNA…
Review: Crop phenomics and high-throughput phenotyping (Mol. Plant)
Plant Science Research WeeklyCrop phenomics has lagged behind crop genomics because traditional methods are time-consuming, expensive, invasive and subjective. Recently, high-throughput, automated, sensor and machine-vision methods have been developed, as reviewed by Yang et al. This review describes a large number of phenotyping…
Review: Tropical trees as time capsules of anthropogenic activity (Trends Plant Sci.)
Plant Science Research WeeklyTrees will help us ensure our future, but they are also a valuable record of our past. This fascinating review article by Caetano-Andrade et al. describes how anthropologists are taking advantage of data recorded in trees to understand more about not only the atmospheric and geological events of the…
Metabolic labeling of RNAs uncovers hidden features and dynamics of the Arabidopsis transcriptome (Plant Cell)
Blog, Plant Science Research WeeklyThe ability to directly sequence RNAs (RNA-seq) has revolutionized our understanding of gene expression, but it can miss or underestimate short-lived RNAs. Several methods have been developed to identify newly-synthesized mRNAs to provide a snapshot of transcription as it happens. Szabo present Neu-seq,…
Reprogramming of root cells during nitrogen-fixing symbiosis involves dynamic polysome association of coding and noncoding RNAs ($) (Plant Cell)
Plant Science Research WeeklyThe symbiotic relationship between Rhizobium bacteria and leguminous plants like Medicago results in the development of secondary root organs called nodules. The bacteria housed in the nodule infection zone assimilate atmospheric nitrogen for plant growth. In this paper, Traubenik et al. used (RNA-seq)…
The pan-genome effector-triggered immunity landscape (Science)
Plant Science Research WeeklySuccessful plant pathogens produce a suite of small molecules called effectors that are injected into plant cells and perturb plant defense. As a counter defense, plants have evolved intracellular receptors (called NLRs; nucleotide-binding domain leucine-rich repeat) that detect specific effectors and…
Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis (Nature)
Plant Science Research WeeklyHydrogen peroxide (H2O2) is an important signal involved in diverse stress responses both intracellularly and extracellularly, but until now it hasn’t been clear how the plant recognizes it. Wu et al. used a genetic screen to search for plants that fail to produce a calcium influx response in the presence…
Embryonic photosynthesis affects post-germination plant growth (Plant Physiol.)
Plant Science Research WeeklyAngiosperm seeds develop within maternal tissues, yet in some species including Arabidopsis the developing embryos carry out photosynthesis. In Arabidopsis, this is transitory, and the embryonic chloroplasts lose chlorophyll and dedifferentiate into eoplasts as the seed matures. Sela et al. set out to…
HY5 interacts with and recruits HDA9 to negatively regulate autophagy (Mol. Plant)
Plant Science Research WeeklyPlants activate autophagy, a cellular recycling process, to recycle useful nutrients or remove harmful items, helping them to withstand harsh conditions. Recently, Yang et al. found that HY5 is a hub connecting the light signaling and autophagy pathways. Under replete conditions (e.g., light and nitrogen-sufficient),…
Damage-gated immune responses to microbes (Cell)
Plant Science Research WeeklyPlants are surrounded by diverse microbes and must avoid mounting an immune response against innocuous microbes, while properly activating defense against invading pathogens. As the initial plant-microbe contacts happen in a limited number of cells, understanding spatially-resolved plant immune responses…
Does ICE1 participate in cold responses?
Plant Science Research WeeklyFor many years, the Arabidopsis transgenic allele ice1-1 was used to demonstrate the role of the transcription factor ICE1 in freezing and cold tolerance. This gene was first identified in a screening strategy using a luciferase reporter for DREB1A expression, another TF involved in downstream signaling.…
Plant Science Research Weekly: February 28
Blog, WWR Full PostReview: Crop phenomics and high-throughput phenotyping
Crop phenomics has lagged behind crop genomics because traditional methods are time-consuming, expensive, invasive and subjective. Recently, high-throughput, automated, sensor and machine-vision methods have been developed, as reviewed by Yang…
Recognizing Plant Cell authors: Nicolas Doll
The Plant Cell, The Plant Cell: Author ProfilesNicolas Doll, first author of Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Sub-domain Adjacent to the Embryo Scutellum
Current Position: Postdoctoral scientist at VIB, Gent (starting April 2020)
Education:
2020- : Post-doc at VIB, Gent,…
Recognizing Plant Cell authors: Cun-Ying Duan
The Plant Cell, The Plant Cell: Author ProfilesCun-Ying Duan, co-first author of Arabidopsis KETCH1 is critical for the nuclear accumulation of ribosomal proteins and gametogenesis
Current Position: State Key laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Master degree
Education: Master in…
Recognizing Plant Cell authors: Feng Xiong
The Plant Cell, The Plant Cell: Author ProfilesFeng Xiong, co-first author of Arabidopsis KETCH1 is critical for the nuclear accumulation of ribosomal proteins and gametogenesis
Current Position: Ph.D. candidate in State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, China
Education: M.S. in State…
Hormonal Solution for (Root) Hair Extension
Research, The Plant Cell, The Plant Cell: In BriefRoot hairs are tubular outgrowths of a subset of root epidermal cells serving multiple roles, including plant anchorage in the soil, water and nutrient absorption, and symbiotic interactions with nitrogen fixing bacteria in legumes (Salazar-Henao et al., 2016). Root hairs form an interface between the…
Shared Genetic Control of Root Traits across Taxa
Plant Physiology, Plant Physiology: On The InsideRoot system architecture (RSA) plays a crucial role in plant productivity and tolerance to environmental stresses. The maize (Zea mays) root system, composed of the embryonic primary root and variable numbers of seminal roots, as well as postembryonic shoot-borne and lateral roots, is both different…
Auxin and Microtubule Array Patterning
Plant Physiology, Plant Physiology: On The InsideThe Arabidopsis hypocotyl is a valuable model for studying axial growth phenomena in flowering plants owing to its dramatic cell elongation in the absence of cell division and its sensitivity to environmental cues. When grown in the dark, a hypocotyl rapidly elongates, using the energy reserves in the…
Recognizing Plant Cell authors: Yen-Ling Lin
The Plant Cell, The Plant Cell: Author ProfilesYen-Ling Lin, first author of SUMO Protease SMT7 Modulates Ribosomal Protein L30 and Regulates Cell-size Checkpoint Function
Current Position: Ph.D. Candidate in Ph.D. Program in Microbial Genomics, National Chung Hsing University and Academia Sinica, Taiwan
Education: BS in Department of Life Science,…
The Nuclear Envelope and Stomatal Dynamics
Plant Physiology, Plant Physiology: On The InsideEukaryotic nuclei are double membrane-bound organelles with distinct inner nuclear membranes (INM) and outer nuclear membranes (ONM). The site where the INM and ONM meet forms the nuclear pore, where nucleocytoplasmic transport occurs. Spanning the INM and the ONM are protein complexes known as “linkers…
Open Sesame! Uncovering a Hidden Key Used by Pathogenic Bacteria to Open the Doors Connecting Plant Cells
Research, The Plant Cell, The Plant Cell: In BriefIt has been known for several decades, and suggested as early as the 1930s (Caldwell 1931), that viruses move their proteins and other molecules from one plant cell to the next by altering and regulating plasmodesmata (PD), the tiny doors connecting the cytoplasm between plant cells. And only in the…
Collinear Chromosomes and Shifting Centromeres in the Arabideae
Research, The Plant Cell, The Plant Cell: In BriefFor such an important structure, the centromere certainly is hard to pin down, particularly in regard to the relationship between its sequence composition and epigenetic state and its functions in chromosome pairing and kinetochore formation. In addition to undergoing rapid sequence evolution, centromeres…
Natural Variation in the Amylose Content of Starch
Plant Physiology, Plant Physiology: On The InsideStarch is the major storage carbohydrate in plants. It occurs as semi-crystalline, insoluble granules consisting of two Glc polymers: amylopectin and amylose. Amylopectin, the major polymer, gives rise to the semi-crystalline matrix of the granule. Amylose is believed to reside in amorphous regions…
Recognizing Plant Direct authors: Kyungwon Min
Plant Direct, Plant Direct: Author ProfilesKyungwon Min, first author of A metabolomics study of ascorbic acid-induced in situ freezing tolerance in spinach (Spinacia oleracea L.)
Current Position: I have recently defended my PhD dissertation under the guidance of Dr. Rajeev Arora’s laboratory, Department of Horticulture, Iowa State University,…
How nutrients affect algal cell cycle regulation
Research, The Plant Cell, The Plant Cell: In a NutshellTakeuchi et al. examine the role of an algal protein during nitrogen starvation and quiescence.
Plant Cell https://doi.org/10.1105/tpc.19.00628
By Tomomi Takeuchi and Christoph Benning, Michigan State University
Background: Living cells need energy to grow and divide. When their source…
Recognizing Plant Physiology authors: Freddy Bunbury
Plant Physiology, Plant Physiology: Author ProfilesFreddy Bunbury, first author of Physiological and Molecular Responses of a Newly Evolved Auxotroph of Chlamydomonas to B12 Deprivation
Current Position: Postdoctoral Fellow in the labs of Arthur Grossman and Devaki Bhaya at the Carnegie Institution for Science at Stanford
Education: BA in Plant Biology…
Malate Transport and Apple Tartness
Plant Physiology, Plant Physiology: On The InsideAcidity is a major contributor to apple (Malus domestica) fruit quality, including fruit overall taste and flavor. Organic acids collectively are responsible for acidity, but malic acid accounts for more than 90% of the total acid and largely controls apple fruit acidity. Most of the malic acid in apple…
Recognizing Plant Cell authors: Ho Won Jung
The Plant Cell, The Plant Cell: Author ProfilesHo Won Jung, first author of Pathogen-associated Molecular Pattern-triggered Immunity Involves Proteolytic Degradation of Core Nonsense-mediated mRNA Decay Factors During the Early Defense Response
Current Position: Associate Professor at Dong-A University, Korea
Education: Ph.D. and Master of Science…
How to Make a LAZY Plant Weep
Plant Physiology, Plant Physiology: On The InsideThe LAZY gene family, discovered through the characterization of a rice (Oryza sativa) mutant with unusually wide tiller angles, encodes proteins that function in gravitropism. Gravitropism begins with a perception process that ultimately causes a difference in the cell elongation rate across the…
Variation in xylem resistance to cavitation explains why some leaves within a canopy are more likely to die under water stress
Plant Physiology, Plant Physiology: News and Views, ResearchMeisha Holloway-Phillips
Department of Environmental Sciences, University of Basel, Switzerland
[email protected]
When trees are subjected to soil water deficits, some leaves and branches show signs of stress or die before others in the canopy. Why is that? Here I highlight recent…
Press Release (Chinese) for IbBBX24 Promotes the Jasmonic Acid Pathway and Enhances Fusarium Wilt Resistance in Sweet Potato
Research, The Plant Cell: NewsPlant cell∣中国农大何绍贞、刘庆昌教授课题组在甘薯蔓割病抗性机理研究中取得突破性进展
近日,国际著名植物学期刊The Plant Cell在线发表了中国农业大学农学院、农业农村部甘薯生物学与生物技术重点实验室何绍贞/刘庆昌教授课题组题为“IbBBX24…
A Key Regulator of Post-Golgi Vesicular Traffic
Research, The Plant Cell, The Plant Cell: In a NutshellRen et al. identify a downstream effector of Rab5a that associates with the tethering and fusion complexes to mediate membrane fusion of dense vesicles with the protein storage vacuoles.
Plant Cell https://doi.org/10.1105/tpc.19.00863
By Y.L. Ren, Y.H. Wang and T. Pan
Background: Plants use…
Review: In vitro analytical approaches to study plant ligand-receptor interactions (Plant Physiol)
Plant Science Research WeeklyIt seems every other paper shows a nice diagram of a signaling cascade that includes a receptor interacting with its ligand. However, sometimes these diagrams are little more than speculation or guesswork. It’s not always easy to figure out if this interaction is real. Here, Sandoval and Santiago review…
Review: Evolution of plant hormone response pathways ($) (Annu. Rev. Plant Biol.)
Plant Science Research WeeklySpatio-temporal action of hormones is essential for proper growth and development of plants. In this review, Blázquez et al. discuss the evolution of the shared features of signaling pathways of different plant hormones. Auxin, jasmonic acid, gibberellic acid, and strigolactone signaling pathways…
Review: Targeting root ion uptake kinetics to increase plant productivity and nutrient use efficiency (Plant Physiol.)
Plant Science Research WeeklyRoots anchor plants and take up water, but one of their most important and complex functions is to bring a large number of different essential nutrients into the plant. Root architecture affects and is affected by nutrient uptake, but ultimately uptake is largely controlled by membrane-bound ion transporters.…
COP1 destabilizes DELLA proteins in Arabidopsis (bioRxiv)
Plant Science Research WeeklyThe canonical model of gibberellic acid (GA) signaling pathway includes the recognition of the hormone by the receptor GID1 and the further degradation of the DELLA proteins by the proteasome. In this paper, Blanco-Touriñan et al. observed in Arabidopsis that the DELLA protein REPRESSOR OF ga1-3 (RGA)…
The maize heterotrimeric G protein β subunit controls shoot meristem development and immune responses ($) (PNAS)
Plant Science Research WeeklyHeterotrimeric G proteins transduce signals between receptors and downstream factors. Previous genetic studies have shown diverse roles for these proteins based on loss-of-function phenotypes; for example mutations in Arabidopsis Gα and Gβ subunits both lead to enlarged shoot apical meristems. Wu et…
High productivity in hybrid-poplar plantations without isoprene emission to the atmosphere ($) (PNAS)
Plant Science Research WeeklyMany trees emit isoprene (C5H8, a small volatile carbon compound) during hot weather, and isoprenes have been shown to help trees tolerate short bursts of high temperatures (heat flecks). Isoprenes are not themselves harmful, but are reactive and can lead to the production of high levels of ground-level…
Imaging plant germline differentiation within Arabidopsis flowers by light sheet microscopy (eLIFE)
Plant Science Research WeeklyAdvances in microscopy have greatly informed our understanding of fundamental plant processes, but the germline cells in flowers have been hard to image as they are tiny and embedded within other tissues. Valuchova et al. present a method using light sheet fluorescence microscopy that allows live cell…
Using CRISPR/Cas9 editing to inactivate an endogenous virus impacting bananas (Commun. Biol.)
Plant Science Research WeeklyBanana streak virus (BSV) is a plant pathogenic pararetrovirus that has integrated into the genome of banana Musa spp., reducing crop production. When BSV-infected banana plants become stressed, BSV reactivates to create functional infectious viruses that can cause lethal tissue necrosis. Tripathi et…
Plant Science Research Weekly: February 21
Blog, WWR Full PostReview: In vitro analytical approaches to study plant ligand-receptor interactions
It seems every other paper shows a nice diagram of a signaling cascade that includes a receptor interacting with its ligand. However, sometimes these diagrams are little more than speculation or guesswork. It’s not…
Ethylene vs. Salicylic Acid in Apical Hook Formation
Research, The Plant Cell: In BriefWhen seeds germinate underground, the emerging seedlings must push upward through the soil to reach sunlight and begin photoautotrophic growth. As the hypocotyl emerges from the seed, mechanical pressure against the soil induces production of ethylene, which accumulates and promotes hypocotyl curling.…
Recognizing Plant Physiology authors: Miaoquan Song
Plant Physiology, Plant Physiology: Author ProfilesMiaoquan Song, first author of OsNAR2.1 interaction with OsNIT1 and OsNIT2 functions in root-growth responses to nitrate and ammonium
Current Position: PhD student of Nanjing Agriculture University
Education: 2013-2020, PhD student, College of Resources and Environmental Sciences, Nanjing Agricultural…
Recognizing Plant Cell authors: Ansul Lokdarshi
The Plant Cell, The Plant Cell: Author ProfilesAnsul Lokdarshi, first author of Light activates the translational regulatory GCN2 kinase via reactive oxygen species emanating from the chloroplast
Current Position: Post-Doctoral Research Associate, The University of Tennessee, Knoxville
Education: Ph.D. Department of Biochemistry & Cellular…
Frequent Centromere Shifts in a Crucifer Clade
Research, The Plant Cell, The Plant Cell: In a NutshellMandáková et al. investigate genome evolution and frequent centromere repositioning in the tribe Arabideae The Plant Cell (2020). https://doi.org/10.1105/tpc.19.00557
By Martin A. Lysak, CEITEC, Masaryk University, Brno 625 00, Czech Republic.
Background: The centromere is a chromosomal structure…
Recognizing Plant Physiology authors: Shreya Agrawal
Plant Physiology, Plant Physiology: Author ProfilesShreya Agrawal, first author of The Functions of Chloroplast Glutamyl-tRNA in Translation and Tetrapyrrole Biosynthesis
Current Position: Postdoctoral Research Fellow, Section of Biomolecular Sciences, Department of Biology, University of Copenhagen, Denmark
Education: Ph.D. in Plant Physiology,…
Recognizing Plant Cell authors: Ourania Lantzouni
The Plant Cell, The Plant Cell: Author ProfilesOurania Lantzouni, first author of GROWTH-REGULATING FACTORS interact with DELLAs and regulate growth in cold stress
Current Position: Seeking a new challenge.
Education: PhD studies at Technical University of Munich, Germany (2013- today); MSc Industrial and Commercial Biotechnology at Newcastle…
Recognizing Plant Cell authors: Lauren Jenkins
The Plant Cell, The Plant Cell: Author ProfilesLauren Jenkins, first author of A General Method for Quantification and Discovery of Acyl Groups Attached to Acyl Carrier Proteins in Fatty Acid Metabolism using LC-MS/MS
Current Position: Senior lab technician, Donald Danforth Plant Science Center, St. Louis, Missouri, United States of America
Education: B.S.…
Recognizing Plant Cell authors: Shin-Ichiro Ozawa
The Plant Cell, The Plant Cell: Author ProfilesShin-Ichiro Ozawa, first author of The OPR Protein MTHI1 Controls the Expression of Two Different Subunits of ATP Synthase CFo in Chlamydomonas reinhardtii
Current Position: Assistant Professor (specially appointed) in Institute of Plant Science and Resources, Okayama University
Education: Ph.D…
Recognizing Plant Physiology first authors: Viviana Andrea Correa Galvis
Plant Physiology, Plant Physiology: Author ProfilesViviana Andrea Correa Galvis, first author of H+ transport by K+ EXCHANGE ANTIPORTER3 promotes photosynthesis and growth in chloroplast ATP synthase mutants
Current Position: CropQuality Lead, Infarm
Education: PhD in Plant Biology, HeinrichHeine University Düsseldorf (HHU), Germany; M.Sc. in Biology,…
Recognizing Plant Cell authors: June-Sik Kim
The Plant Cell, The Plant Cell: Author ProfilesJune-Sik Kim, co-first author of DREB1A/CBF3 is repressed by transgene-induced DNA methylation in the Arabidopsis ice1-1 mutant
Current Position: Researcher, Gene discovery Researcher Group, RIKEN Center for Sustainable Resource Science, Japan
Education: Ph.D., Department of Applied Biological Chemistry,…
Recognizing Plant Cell authors: Satoshi Kidokoro
The Plant Cell, The Plant Cell: Author ProfilesSatoshi Kidokoro, co-first author of DREB1A/CBF3 is repressed by transgene-induced DNA methylation in the Arabidopsis ice1-1 mutant
Current Position: Assistant professor, Laboratory of Plant Molecular Physiology, Graduate School of Agricultural and Life Sciences, The University of Tokyo
Education:…
Ubiquitous ubiquitin: The K63 ubiquitinome
Research, The Plant Cell: In BriefPolyubiquitination, the sequential attachment of the small 8kDa globular protein ubiquitin (Ub) to target proteins, represents a major post-translational modification that ultimately determines the substrate’s cellular fate. Ub conjugation is an extremely versatile form of protein regulation since…
Recognizing Plant Physiology authors: Yiqiong Li
Plant Physiology, Plant Physiology: Author ProfilesYiqiong Li, first author of Secondary mutation-induced alternative splicing suppresses RNA splicing defect of the jing he sheng1 mutant
Current Position: Ph.D. student in Prof. Hongbo Gao’s laboratory, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China
Education:…
Recognizing Plant Cell authors: Sachie Kimura
The Plant Cell, The Plant Cell: Author ProfilesSachie Kimura, first author of CRK2 and C-terminal Phosphorylation of NADPH Oxidase RBOHD Regulate Reactive Oxygen Species Production in Arabidopsis
Current Position: Assistant Professor, Ritsumeikan Global Innovation Research Organization (R-GIRO), Ritsumeikan University, Japan
Education: Ph.D.…
Recognizing Plant Physiology authors: Xinyue Li
Plant Physiology, Plant Physiology: Author ProfilesXinyue Li, first author of Histone Acetylation at the Promoter for the Transcription Factor PuWRKY31 Affects Sucrose Accumulation in Pear Fruit
Current Position: Ph.D. candidate at the College of Horticulture, Shenyang Agricultural University, Shenyang, China
Education: Successive master-doctor program…
Recognizing Plant Cell authors: Qian Zhang
The Plant Cell, The Plant Cell: Author ProfilesQian Zhang, co-first author of IbBBX24 Promotes the Jasmonic Acid Pathway and Enhances Fusarium Wilt Resistance in Sweet Potato
Current Position: PhD Candidate, Department of Plant Genetics, Breeding and Seed Science, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
Education: PhD…
Recognizing Plant Cell authors: Huan Zhang
The Plant Cell, The Plant Cell: Author ProfilesHuan Zhang, co-first author of IbBBX24 Promotes the Jasmonic Acid Pathway and Enhances Fusarium Wilt Resistance in Sweet Potato
Current Position: Post-doc, Department of Plant Genetics, Breeding and Seed Science, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
Education: Ph.D.…
Microtubule regulation in the moss Physcomitrella patens
Research, The Plant Cell: In a NutshellLeong et al. examine the roles of Kinesin-13 and -8 in moss mitosis.
Plant Cell https://doi.org/10.1105/tpc.19.00521
By Shu Yao Leong (Nagoya University, currently Eberhard Karls University of Tübingen) & Moé Yamada (Nagoya University)
Background: Microtubules (MTs) are dynamic macromolecular…
Review: Deep learning for plant genomics and crop improvement (Curr. Opin. Plant Biol.)
Plant Science Research WeeklyOne of the goals of plant science is to use the molecular phenotype (genome, transcriptome, proteome) to predict the whole-plant phenotype. Deep learning approaches can potentially begin to do this, starting with a training dataset, and testing it with a validation dataset. Wang et al. review advances…
Review: Methods to visualize elements in plants (Plant Physiol)
Plant Science Research Weekly
Plant Science Research Weekly: February 14
February 14, 2020/in Blog, WWR Full Post /by Mary Williams
Review: Deep learning for plant genomics and crop improvement
One of the goals of plant science is to use the molecular phenotype (genome, transcriptome, proteome) to predict the…
Review. Flowering plants in the Anthropocene: A political agenda (Trends Plant Sci)
Plant Science Research WeeklyFor the past 100 million years, flowering plants have been the main producers of land biomass. They also are indirectly responsible for the origin of agriculture, setting the ball rolling for the onset of the Anthropocene. Negrutiu et al. argue that the accompanying rapid global changes require a reconsideration…
A two-way molecular dialogue between embryo and endosperm is required for seed development ($) (Science)
Plant Science Research WeeklyDuring seed formation, the developing embryo becomes covered with a water-impermeable cuticle. Several Arabidopsis mutants have been identified that are defective in cuticle formation and provide a framework for how it is formed. Doll et al. have added a missing piece to this puzzle. Briefly, embryo…
Central clock components modulate plant shade avoidance by directly repressing transcriptional activation activity of PIF proteins ($) (PNAS)
Plant Science Research WeeklyPHYTOCHROME INTERACTING FACTORs (PIFs) are transcriptional factors that relay light signals from the phytochrome photoreceptors to regulate the expression of light-sensitive genes, but there is not a direct correlation between PIF binding and expression of the target genes. In this paper, Zhang Y et…
Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice ($) (Science)
Plant Science Research WeeklyThe well-known success of the green-revolution was accomplished through the development of semi-dwarf grasses (rice and wheat), which led to decreased losses to lodging and higher yields; however, the benefits of these improved varieties depends on the application of nitrogen-rich fertilizer. As N-rich…
DIX domain polymerization drives assembly of plant cell polarity complexes (Cell)
Plant Science Research WeeklyIn multicellular organisms like plants, asymmetric cell division can arise from cell polarity. The signals that establish cell polarity relative to the body axis are unknown in plants. In Arabidopsis, SOSEK1 was previously identified as having a polar distribution. SOSEK1 has a DIX domain similar to…
Rhizosphere microbiome mediates systemic root metabolite exudation ($) (PNAS)
Plant Science Research WeeklyRoots exude metabolites that affect the composition and activities of their microbiome. Korenblum et al. show that the microbiome in turn affects metabolite exudation, not only locally but also systemically (shown using a split-root system). They call this response SIREM: systemically induced root exudation…
Farming plant cooperation in crops (Proc. R. Soc. B.)
Plant Science Research WeeklyIf you want a great plant, select for a strong, vigorous, high-yielding individual; this is also the outcome of natural selection. But if you want a great field of plants, these traits may not be as suitable, because the plants will expend energy competing between themselves. When seeds from many plants…
Plant Science Research Weekly: February 14
Blog, WWR Full PostReview: Deep learning for plant genomics and crop improvement
One of the goals of plant science is to use the molecular phenotype (genome, transcriptome, proteome) to predict the whole-plant phenotype. Deep learning approaches can potentially begin to do this, starting with a training dataset, and…
Multilayered Regulation in Senescence
Research, The Plant Cell, The Plant Cell: In a NutshellSakuraba et al. show the existence of multilayered regulation systems for the rice ONAC054 transcription factor, which is involved in abscisic acid-induced leaf senescence in rice. Plant Cell https://doi.org/10.1105/tpc.19.00569
By Nam-Chon Paek, Department of Plant Science, Seoul National University,…
Make, Modify, Move: Multilayered Regulation of ONAC054 During ABA-Induced Leaf Senescence
Research, The Plant Cell, The Plant Cell: In Brief‘Senescence’ originates from the Latin word senescere, to grow old. However, the process of leaf senescence is not simply the passive death of the leaf but instead represents an active and highly regulated process of nutrient remobilization from older leaves into developing parts of the plant to…
Rapid changes: ABA-independent SnRK2s target mRNA decay
Plant Physiology, Plant Physiology: News and Views, ResearchMagda Julkowska
[email protected]
In response to stress, secondary messengers and rapid and reversible protein phosphorylation contribute to signaling cascades that generate unique signatures indicating stress type and severity. Activation of stress-induced signaling cascades…
MED25 regulates the alternative splicing of JAZ genes through recruitment of splicing factors PRP39 and PRP40
Research, The Plant Cell, The Plant Cell: In a NutshellWu et al. investigated MED25 recruits splicing factors to regulate the alternative splicing of JAZ genes in Arabidopsis. The Plant Cell (2019). https://doi.org/10.1105/tpc.19.00583
Background: The jasmonate (JA) signaling pathway controls resource allocation between growth- and defense-related…
A Novel Regulatory Mechanism in Plant Innate Immunity
Research, The Plant Cell, The Plant Cell: In a NutshellXing et al. use advance microscopy to show that phospholipase D functions in the response to powdery mildew. Plant Cell https://doi.org/10.1105/tpc.19.00534
by Jingjing Xing, Xiaojuan Li, Xiaohua Wang, Xueqin Lv, Li Wang, Liang Zhang, Yingfang Zhu, Qianhua Shen, František Baluška, Jozef Šamaj,…
Recognizing Plant Physiology authors: Marcus Griffiths
Plant Physiology, Plant Physiology: Author ProfilesMarcus Griffiths, first author of Targeting root uptake kinetics to increase plant productivity and nutrient use efficiency
Current Position: Postdoctoral Fellow in the Root Phenomics lab headed by Dr. Larry York, Noble Research Institute, US
Education: PhD in Plant & Crop Sciences at University…
Recognizing Plant Cell authors: Christophe Lambing
The Plant Cell, The Plant Cell: Author ProfilesChristophe Lambing, first author of Interacting genomic landscapes of REC8-cohesin, chromatin and meiotic recombination in Arabidopsis thaliana
Current Position: Postdoctoral Researcher at the University of Cambridge, UK
Education: PhD in Molecular Biology at the University of Birmingham, UK.…
Recognizing Plant Physiology authors: Tuan Long
Plant Physiology, Plant Physiology: Author ProfilesTuan Long, co-first author of RMS2 encoding a GDSL lipase mediates lipid homeostasis in anthers to determine rice male fertility
Current Position: Research Director in Hainan Bolian Rice Gene Technology Co., Ltd.
Education: Ph.D in Biochemistry and Molecular Biology from Huazhong Agricultural University
Non-scientific…
Recognizing Plant Physiology authors: Juan Zhao
Plant Physiology, Plant Physiology: Author ProfilesJuan Zhao, co-first author of RMS2 encoding a GDSL lipase mediates lipid hemostasis in anthers to determine rice male fertility
Current Position: Ph.D candidate, State Key Lab of Rice Biology, China National Rice Research Institute (CNRRI), Hangzhou, China
Education: Master of biochemistry and…
Recognizing Plant Cell authors: Cheng-Yu Hou
The Plant Cell, The Plant Cell: Author ProfilesCheng-Yu Hou, co-first author of Widespread Exon Junction Complex Footprints in the RNA Degradome Mark mRNA Degradation Before Steady-state Translation
Current Position: Bioinformatician, Bioinformatics team of technology department, Sofiva Genomics Company, Taiwan
Education: Master of Science in…
Recognizing Plant Cell authors: Bo-Han Hou
The Plant Cell, The Plant Cell: Author ProfilesBo-Han Hou, co-first author of Widespread Exon Junction Complex Footprints in the RNA Degradome Mark mRNA Degradation Before Steady-state Translation
Current Position: research assistant, Agricultural Biotechnology Research Center, Academia Sinica, Taiwan
Education: Bachelor of Nutritional Science,…
Recognizing Plant Cell authors: Wen-Chi Lee
The Plant Cell, The Plant Cell: Author ProfilesWen-Chi Lee, co-first author of Widespread Exon Junction Complex Footprints in the RNA Degradome Mark mRNA Degradation Before Steady-state Translation
Current Position: Research assistant, Agricultural Biotechnology Research Center, Academia Sinica, Taiwan
Education: M.S. and B.S. in Botany at National…
Roots Calling Leaves: Oxylipins in Induced Systemic Resistance
Research, The Plant Cell, The Plant Cell: In a NutshellWang et al. identify signals related to induced systemic resistance produced by a root-colonizing fungus. Plant Cell https://doi.org/10.1105/tpc.19.00487
Background: Trichoderma virens is an agriculturally-relevant root-colonizing fungus that provides its plant hosts many benefits, such as increased…
Review. Gossypium genomics: Trends, scope, and utilization for cotton improvement (Trends Plant Sci)
Plant Science Research WeeklyCotton (Gossypium spp.) provides the world’s most important natural fiber, and I suspect with our growing realization of the problems with plastics there will be still more demand for it. Yang et al. review the current state of Gossypium genomics. As a crop that has been domesticated for millennia,…
Review. Same, but different: growth responses of primary and lateral roots ($) (J. Exp. Bot.)
Plant Science Research WeeklyLateral roots arising from programmed cell division from primary roots in both monocots and dicots share some similarities and dissimilarities in developmental signaling. In this review, Waidmann et al. discuss lateral root organogenesis and elongation with respect to hormone, nutrient, and abiotic conditions.…
Reciprocal cybrids reveal how organellar genomes affect plant phenotypes (Nature Plants)
Plant Science Research WeeklyA cybrid is a cytoplasmic hybrid; in other words, a cell or organism in which the cytosolic genomes (mitochondria and plastid) have a different origin than the nuclear genome; the nuclear genome is inherited solely from the paternal parent, and the cytosolic genomes from the maternal parent. Starting…
Accurate and versatile 3D segmentation of plant tissues at cellular resolution (bioRxiv)
Plant Science Research WeeklyAdvances in microscopy allow biologists to document and understand phenotypic changes at the tissue level. Despite this advancement, analysis of microscopic images to characterize changes in phenotypes is still under development. In this paper, Wolny et al. have developed an image analysis tool PlantSeg…
Expression atlas of Selaginella moellendorffii provides insights into the evolution of vasculature, secondary metabolism, and roots (Plant Cell)
Plant Science Research WeeklyLycophytes, including the model species Selaginella moellendorffii, are extant (still alive today) seedless vascular plants that were particularly abundant around 400-300 million years ago (and major contributors to the formation of coal). To further understand the biology of some of these oldest extant…
Insect herbivory antagonizes leaf cooling responses to elevated temperature in tomato (PNAS)
Plant Science Research WeeklyPlants have strategies to cool themselves when the temperature is hot. These include increasing their rate of transpirational cooling through stomatal opening and raising their leaves, which can enhance air flow. Previous studies have shown a role for the heat shock proteins (HSPs) and their cochaperone…
Monitoring and mitigation of toxic heavy metals and arsenic accumulation in food crops: A case study of an urban community garden (Plant Direct)
Plant Science Research WeeklyUrban gardens are a great way to introduce people to plant science, to bring fresh food into areas underserved by grocery stores (“food deserts”), and can promote a sense of community. But as Cooper et al. observe, many potential sites can be contaminated with heavy metals (lead, cadmium) and metalloids…
Plant Science Research Weekly: February 7
Blog, WWR Full PostReview. Gossypium genomics: Trends, scope, and utilization for cotton improvement
Cotton (Gossypium spp.) provides the world’s most important natural fiber, and I suspect with our growing realization of the problems with plastics there will be still more demand for it. Yang et al. review the current…
Endosymbiotic Pseudomonas stutzeri within Rhodotorula mucilaginosa JGTA-S1
Research, The Plant Cell, The Plant Cell: In a NutshellPaul, Saha, et.al investigated the Improvement of nitrogen nutrition in rice by interaction with the basidiomycete Rhodotorula mucilaginosa and its N2-fixing endobacteria. Plant Cell https://doi.org/10.1105/tpc.19.00385
By Karnelia Paul1, Chinmay Saha1,2,3 and Anindita Seal1
1Department of Biotechnology…
Recognizing Plant Physiology authors: María José Sánchez-Barrena
Plant Physiology, Plant Physiology: Author ProfilesMaría José Sánchez-Barrena, first author of Recognition and activation of the plant AKT1 potassium channel by the kinase CIPK23
Current Position: Associate Scientist, Department of Crystallography and Structural Biology, Institute “Rocasolano”, Spanish National Research Council, Madrid, Spain
Education:…
Recognizing Plant Direct authors: Nitya Subrahmanian
Plant Direct, Plant Direct: Author ProfilesNitya Subrahmanian, first author of Chlamydomonas reinhardtii as a plant model system to study mitochondrial complex I dysfunction
Current Position: Post-doctoral researcher at The Ohio State University, Columbus, OH
Education: Ph.D. in Plant Cellular and Molecular Biology at The Ohio State University,…
Recognizing Plant Cell authors: Tomomi Takeuchi
The Plant Cell, The Plant Cell: Author ProfilesTomomi Takeuchi, first author of Chlamydomonas CHT7 is required for an effective quiescent state by regulating nutrient-responsive cell cycle gene expression
Current Position: Post-doctoral researcher at Michigan State University
Education: BSc in Human Biology; BSc and PhD in Biochemistry and Molecular…
Journey and destination: KORRIGAN1 subcellular localization dynamically changes during plant growth and stress tolerance
Research, The Plant Cell: In BriefNumerous proteins coordinate the synthesis, delivery, and assembly of cell wall components during cell wall biosynthesis (McFarlane et al., 2014). KORRIGAN1 (KOR1) is a membrane-anchored endo-β1,4-glucanase glycoprotein involved in the cellulose biosynthesis of primary and secondary cell walls. KOR1…
A Feedforward Transcriptional Loop in Leaf Senescence
Research, The Plant Cell, The Plant Cell: In a NutshellZhuo et al. show the existence of jasmonate-activated MYC2-Dof2.1-MYC2 transcriptional loop that is involved in the promotion of leaf senescence in Arabidopsis. Plant Cell https://doi.org/10.1105/tpc.19.00297
By M. Zhuo, Y. Sakuraba, and S. Yanagisawa, The University of Tokyo, Japan
Background:…
Preparing your Manuscript for Submission
Blog, Plantae Webinars, Pubs Pages, Science Communication, WebinarsPreparing your Manuscript for Submission
Recorded Tuesday, February 4, 2020
About This Webinar
In this webinar, ASPB Features Editor Mary Williams will outline the key steps in writing a paper, preparing figures, and navigating the submission process. Topics include how to frame the…
Adapting to high light: At a different time and place?
Plant Physiology, Plant Physiology: News and Views, ResearchWhen rays of light enter a plant cell, they find their way to the chlorophyll pigments located in the chloroplast. Chlorophyll molecules are embedded in the light reaction complexes photosystem I (PSI) and photosystem II (PSII), which capture and store the energy needed for carbon fixation in the Calvin…
The photosystem factory in chloroplasts
Research, The Plant Cell, The Plant Cell: In a NutshellSun et al. reveal the subcellular organization of photosystem biogenesis in Chlamydomonas. Plant Cell https://doi.org/10.1105/tpc.19.00263
by Melissa Valente-Paterno, Yi Sun and William Zerges. Department of Biology, Concordia University.
Background: Cells localize intracellular processes to…
Recognizing Plant Physiology authors: Victoria Gastaldi
Plant Physiology, Plant Physiology: Author ProfilesVictoria Gastaldi, first author of Class I TCP transcription factors activate the SAUR63 gene subfamily in gibberellin-dependent stamen filament elongation
Current Position: PhD student at Instituto de Agrobiotecnología del Litoral (CONICET-UNL), Santa Fe, Argentina
Education: Bachelor's…
Recognizing Plant Cell authors: Camilla Ferrari
The Plant Cell, The Plant Cell: Author ProfilesCamilla Ferrari, first author of Expression atlas of Selaginella moellendorffii provides insights into the evolution of vasculature, secondary metabolism and roots
Current Position: Postdoctoral scientist, VIB-UGENT Center for Plant System Biology, Ghent Belgium
Education: B.Sc. Biological Sciences,…
Review: Characteristics, drivers and feedbacks of global greening (Nat. Rev. Earth Environ.)
Plant Science Research WeeklyWhenever we talk about global trends there are of course local variations. Here, Piao et al. discuss recent trends of global greening, which is occurring at arctic as well as temperate and tropical regions. Overall, this greening is attributed to increasing atmospheric CO2, which promotes plant growth,…
AuxSen: a biosensor for direct visualization of auxin (bioRxiv)
Plant Science Research WeeklyAuxins participate in nearly every aspect of plants' life cycle, but the information about the actual distribution of this hormone is scarce. The location of the hormone has been inferred using reporters based on auxin-transcriptional responses or auxin-dependent degradation signals. For a direct visualization,…
Putative cis-regulatory elements predict iron deficiency responses in Arabidopsis roots (Plant Physiol.)
Plant Science Research WeeklyIron (Fe) is an important micronutrient needed by plants for survival. Plants have evolved a range of morphological, physiological and molecular responses to Fe availability, including the transcriptional regulation of over one thousand genes in response to Fe deficiency (-Fe) in Arabidopsis. However,…
GPA5 encodes a Rab5a effector required for post-Golgi trafficking of rice storage proteins ($) (Plant Cell)
Plant Science Research WeeklyStorage proteins secreted into vacuoles during seed development serve as precursors for germination and plant growth. In this paper, Ren et al. identified a regulator, GLUTELIN PRECURSOR ACCUMULATION 5 (GPA5) that is involved in protein trafficking into the vacuoles during seed development. The loss…
Death in cells overlying lateral root primordia facilitates organ growth in Arabidopsis (Curr. Biol.)
Plant Science Research WeeklyWhile cell division and cell expansion are known to be determinants of plant organ growth, little is known about the role of cell elimination and death in this process. Cell death indicators such as cell death- and autolysis-associated cysteine proteases have been observed in cells overlying the site…
MicroRNA397b-LACCASE2 module regulates root lignification under water- and phosphate deficiency ($) (Plant Physiol)
Plant Science Research WeeklyWater and nutrient availability are a major limiting factors for plant productivity. Plant have evolved a series of complex adaptive features that help them to survive in the hostile environment. Upregulation of lignin biosynthetic genes in roots under salt and water stress have been reported in some…
Three previously characterized resistances to yellow rust are encoded by a single locus Wtk1 (J. Exp. Bot.)
Plant Science Research WeeklyYellow rust is a fungal disease of wheat. Three mutants with enhanced resistance were identified in wild emmer wheat from different locations were previously mapped to the same region of chromosome 1B. Given that each locus showed a different degree of resistance, it was presumed that they were non-allelic.…
Perception of Agrobacterium tumefaciens flagellin by FLS2XL confers resistance to crown gall disease (Nature Plants)
Plant Science Research WeeklyFLS2 is a well-characterized cell-surface receptor that recognizes a short epitope found on most bacterial flagellin proteins. The plant pathogen Agrobacterium tumefaciens, causative agent of crown gall disease, deviates strongly at this epitope region, and so is generally not recognized by FLS2 receptors,…
Plant Science Research Weekly: January 31
Blog, WWR Full PostReview: Characteristics, drivers and feedbacks of global greening
Whenever we talk about global trends there are of course local variations. Here, Piao et al. discuss recent trends of global greening, which is occurring at arctic as well as temperate and tropical regions. Overall, this greening is…
To Be or Not To Be Pathogenic: Transcriptional Reprogramming Dictates a Fungal Pathogen’s Response to Different Hosts
Research, The Plant Cell, The Plant Cell: In BriefThe fungal pathogen Fusarium virguliforme invades a wide spectrum of host plants, ranging from eudicots to monocots. Interestingly, fungal root colonization results in disease-producing phenotypes only in certain eudicot hosts (Kolander et al., 2012). For instance, F. virguliforme causes sudden death…
First Author Profiles
Blog, Pubs PagesHave you recently published an article in The Plant Cell, Plant Physiology, or Plant Direct as the first author? If you have, I hope you’ve taken the opportunity to send me your profile! For the past couple of years, we’ve been helping our first authors get the word out about themselves and their…
Promoting the value of publishing in society journals: Perspective from ASPB
Blog, Pubs PagesWith the rise of high-impact commercially published journals in recent years, journals published by learned societies face greater competition than ever before. While many society journals are among the highest-impact titles in their fields, making them top choices among scholars, for societies it is…
The Shape of Rings to Come: Systems Approach to Xylem and Phloem Formation in Arabidopsis
Research, The Plant Cell, The Plant Cell: In BriefPlants have veins too. As in animals, the plant vasculature facilitates the circulation of water and nutrients across tissues and organs. Unlike animals, it originates from a self-renewing population of meristematic cells forming the (pro)cambium ring within stems and tree trunks and roots. Local signals…
Enhanced Metabolic Degradation: The Last Evolved Glyphosate Resistance Mechanism of Weeds?
Plant Physiology, Plant Physiology: News and Views, ResearchFor the past two decades, glyphosate has been the most used herbicide worldwide, resulting in prolonged, extreme selection pressure for glyphosate-resistant (GR) weeds. Glyphosate’s only target as a herbicide is 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), an enzyme of the shikimate pathway. …
Differential modulation of the pathogen transcriptome by distinct hosts
Research, The Plant Cell, The Plant Cell: In a NutshellBaetsen-Young et al. identified key transcriptomic differences in coexpression networks following Fusarium virguliforme infection of symptomatic (soybean) vs. asymptomatic (corn) hosts Plant Cell https://doi.org/10.1105/tpc.19.00697
By Amy Baetsen-Young and Brad Day, Michigan State University
Background:…
Recognizing Plant Physiology authors: Xinyu Fu
Plant Physiology, Plant Physiology: Author ProfilesXinyu Fu, first author of Failure to Maintain Acetate Homeostasis by Acetate-Activating Enzymes Impacts Plant Development
Current Position: Post-doctoral Research Associate, Plant Research Laboratory, Michigan State University
Education: Ph.D. in Plant Biology (Minor: Statistics) from Iowa State…
A novel upstream regulator of trichome development inhibitors
Plant Physiology: News and Views, ResearchMuch like the spikes that deter birds from sitting on fences, trichomes — hair like projections on the leaf surface — are the epidermis’ first line of defence, discouraging insects and other pests (Levin, 1973). In addition to their role protecting the plant, trichomes are an excellent marker to…
The Evening Complex of the Circadian Clock and Chromatin
Plant Physiology, Plant Physiology: On The InsideThe circadian clock generates endogenous biological rhythms with periods of ~24 h. Circadian transcription allows the molecular anticipation of the environmental cycles, which improves plant fitness and adaptation. Consistent with its adaptive function, the circadian clock is subject to multiple layers…
Low Temperature Enhances Plant Immunity
Plant Physiology, Plant Physiology: On The InsideAmbient temperature within the normal range of plant growth influences both pathogen virulence and host immune response. Plants rely on multilayered and multibranched immune systems to fight off pathogens. Plant immune responses are regulated by multiple plant hormones including salicylic acid (SA),…
Far-Red Light and Gibberellin Signaling in Pine
Plant Physiology, Plant Physiology: On The InsideShade-intolerant plants sense surrounding light competitors and respond rapidly with shade-avoidance responses (SARs), including elongation of the stem, hypocotyl, or petiole. Far-red light (FR) is known to be an important light cue during this process. Gibberellins (GAs) are known to play an important…
Salinity Responses of Galapagos Tomatoes
Plant Physiology, Plant Physiology: On The InsideHigh soil salinity affects the growth and development of plants, thus reducing crop yields. The wild relatives of modern crops often have adaptations to environmental stressors, and the alleles underlying these adaptations represent a rich source of genetic material that can be explored to improve environmental…
A Na+ Transporter Negatively Regulates Salt Tolerance
Plant Physiology, Plant Physiology: On The InsideAmong cereal crops, barley (Hordeum vulgare) is the most salt-tolerant species and is widely used for salt-tolerance studies. Recently, a genome-wide association study on 2,671 barley genotypes showed that single nucleotide polymorphisms from HvHKT1;5, a member of the high-affinity K+ transporter (HKT)…
Insights into the Evolution of C4 Photosynthesis in the Grasses
Plant Physiology, Plant Physiology: On The InsideMost evidence supports the idea that the C4 photosynthetic pathway arose via a series of innovations that initially enabled plants to refix a large fraction of photorespired CO2 via the shuttling of Gly from the mesophyll (M) to a sheath of cells surrounding the vascular tissue, where the Gly is decarboxylated.…
Recognizing Plant Physiology authors: Meng Wang
Plant Physiology, Plant Physiology: Author ProfilesMeng Wang, first author of TaANR1-TaBG1 and TaWabi5-TaNRT2s/NARs link ABA metabolism and nitrate acquisition in wheat roots
Current Position: Assistant Professor, Institute of Soil Science, Chinese Academy of Sciences
Education: Bachelor degree (2006-2010): Shandong University, China; Doctor degree…
Salicylic Acid in Hook Development: Communication with Ethylene
Research, The Plant Cell, The Plant Cell: In a NutshellHuang et al. found that SA inhibits hook formation and is dependent on the ET pathway in Arabidopsis. Plant Cell https://doi.org/10.1105/tpc. 19.00658
By Peixin Huang, Yichuan Wang, and Hongwei Guo
Background: For germnating seedlings to survive and become a mature plant, they must push through…
Recognizing Plant Physiology authors: Ross Hendron
Plant Physiology, Plant Physiology: Author ProfilesRoss Hendron, first author of Subdivision of light signalling networks contributes to partitioning of C4 photosynthesis
Current Position: Post-doctoral researcher in the Department of Plant Sciences, Oxford University
Education: Dphil in Interdisciplinary Bioscience, Oxford University
Non-scientific…
Recognizing Plant Physiology authors: Hitaishi Khandal
Plant Physiology, Plant Physiology: Author ProfilesHitaishi Khandal, first author of MicroRNA397b-LACCASE2 module regulates root lignification under water- and phosphate deficiency
Current Position: Post-Doctoral fellow, Faculty of Biology, Israel Institute of Technology-Technion, Haifa, Israel
Education: Ph.D. from National Institute of Plant Genome…
Recognizing Plant Physiology authors: Birte Schwarz
Plant Physiology, Plant Physiology: Author ProfilesBirte Schwarz, first author of Putative cis-regulatory elements predict iron deficiency responses in Arabidopsis roots
Current Position: Ph.D. candidate in the lab of Prof. Dr. Petra Bauer at Heinrich Heine University, Düsseldorf, Germany. Starting February 2020, postdoctoral researcher in the group…
Recognizing Plant Physiology authors: Yuzhu Lu
Plant Physiology, Plant Physiology: Author ProfilesYuzhu Lu, first author of SLENDER RICE1 and Oryza sativa INDETERMINATE DOMAIN2 Regulating OsmiR396 Is Involved in Stem Elongation
Current Position: associate professor, College of Bioscience and Biotechnology, Yangzhou University, Yangzhou, 225009, China
Education: 2005, Ph.D. from Wuhan University…
Review. Small RNAs and extracellular vesicles: New mechanisms of cross-species communication and innovative tools for disease control (PLOS Pathogens)
Plant Science Research WeeklyWe have only recently begun to appreciate the phenomenon of cross-species or cross-kingdom small RNA transfer, and its applications. Using examples from plants and animals, Cai et al. summarize how some pathogens have evolved the capacity to introduce small RNAs into their host to suppress host defense…
Review: Harnessing atmospheric nitrogen for cereal crop production ($) (Curr. Opin. Biotechnol.)
Plant Science Research WeeklyNitrogen demands for plant growth are accomplished through fertilizers or biological nitrogen fixation. Industrial production of nitrogen fertilizer is expensive and causes pollution due to leaching of unused fertilizer. In this review, Bloch et al. discuss the current status of biological nitrogen fixation…
Gene duplication accelerates the pace of protein gain and loss from plant organelles (Mol. Biol. Evol.)
Plant Science Research WeeklyOrganelles, such as the chloroplast and nucleus, are structures with specific functions within a plant cell. It has been reported that many related, or homologous, proteins function in different organelles. However, how and why organellar proteins have diverged over evolutionary time remains unclear.…
Mitochondrial fostering: the mitochondrial genome may play a role in plant orphan gene evolution (bioRxiv)
Plant Science Research WeeklyOrphan genes are those that are found in only a single species. In trying to understand the origin of orphan genes, O’Conner and Li have found that many of these orphan genes are likely to have originated as mitochondrial genes, as many are nuclear genes whose encoded proteins are targeted to the mitochondria…
The origin of land plants is rooted in two bursts of genomic novelty (Curr. Biol)
Plant Science Research WeeklyThe transition of plants from water to land is one of the most momentous shifts in the history of life on Earth. 500 million years ago, the first land plants dramatically changed the environments on the planet, creating soils, rivers and the oxygen-rich atmosphere. However, the factors that enabled early…
A single light-responsive sizer can control multiple-fission cycles in Chlamydomonas (Curr. Biol.)
Plant Science Research WeeklyHow do cells know when it is time to divide? Helt et al. explore this question using the single-celled alga Chlamydomonas. Unlike most animal and fungal cells, which tend to maintain a relatively consistent size by dividing after their size has doubled, Chlamydomonas cells can undergo several rounds…
Isolation of an archaeon at the prokaryote–eukaryote interface (Nature)
Plant Science Research WeeklySometime around 1.8 to 2 billion years ago, complex eukaryotic cells appeared for the first time, providing the ancestor for plants, animals and fungi. Many lines of evidence have indicated that this event probably involved an ancient archaeon taking up an ancient bacterium, the progenitor of all mitochondria.…
SUPPRESSOR OF MAX2 1-LIKE 5 promotes secondary phloem formation during radial stem growth (Plant J)
Plant Science Research WeeklyPlant tissues continue to develop postembryonically through proliferation at the shoot and root apical meristem. In the vasculature, radial growth occurs through the proliferation of the undifferentiated cambial cells. Members of the SUPPRESSOR OF MAX2 1-LIKE (SMXL) proteins are known to be involved…
A proposed new classification scheme for fungal and oomycete pathogens based on carbohydrate-active enzymes (Front. Microbiol)
Plant Science Research WeeklyFilamentous pathogens (fungi and oomycetes) use a variety of tactics to obtain nutrients from plants. Classically, they have been categorized as biotrophic ("eating" living tissues), nectrotrophic (eating dead tissues) or hemibiotrophic (biotrophic followed by heterotrophic). Hane et al. point out that…
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics (Nature Comms)
Plant Science Research WeeklyPreviously, crop-associated mycobiomes were thought to assemble largely under the control of deterministic selection by the plant host with limited influence from drift. This study by Gao et al., highlights the important role of stochastic processes in fungal community assembly, particularly in the hosts’…
From population to production: 50 years of scientific literature on how to feed the world (Global Food Security)
Plant Science Research WeeklyTamburino et al. analyzed text from more than 12,000 research articles published in the past 50 years that included the terms “global” or “world” and “food supply”, “food demand’, or “zero hunger”. From this dataset, they quantified terms related to population, total food production,…
Plant Science Research Weekly: January 24
WWR Full PostReview. Small RNAs and extracellular vesicles: New mechanisms of cross-species communication and innovative tools for disease control
We have only recently begun to appreciate the phenomenon of cross-species or cross-kingdom small RNA transfer, and its applications. Using examples from plants and…
Recognizing Plant Physiology authors: Csaba Papdi
Plant Physiology, Plant Physiology: Author ProfilesCsaba Papdi, co-first author of E2FB interacts with RETINOBLASTOMA RELATED and regulates cell proliferation during leaf development
Current Position: Postdoctoral researcher at IBMP, Institut de biologie moléculaire des plantes du CNRS, Strasbourg, France
Education: PhD in plant molecular biology,…
Recognizing Plant Cell authors: Mingjia Chen
The Plant Cell, The Plant Cell: Author ProfilesMingjia Chen. first author of A Kinase and a Glycosylase Catabolize Pseudouridine in the Peroxisome to Prevent Toxic Pseudouridine Monophosphate Accumulation
Current Position: Associate Professor, College of Life Sciences, Nanjing Agricultural University
Education: PhD at the Institute of Plant…
Recognizing Plant Physiology authors: Csaba Papdi
Plant Physiology, Plant Physiology: Author ProfilesCsaba Papdi, co-first author of ErbB-3 BINDING PROTEIN 1 Regulates Translation and Counteracts RETINOBLASTOMA RELATED to Maintain the Root Meristem
Current Position: Postdoctoral researcher at IBMP, Institut de biologie moléculaire des plantes du CNRS, Strasbourg, France
Education: PhD in plant…
Recognizing Plant Direct authors: Puneet Paul
Plant Direct, Plant Direct: Author ProfilesPuneet Paul, first author of Divergent phenotypic response of rice accessions to transient heat stress during early seed development
Current Position: Post-Doctoral Research Associate at the Department of Agronomy and Horticulture, University of Nebraska-Lincoln
Education: Ph.D. in Plant Molecular…
Top 5 Articles of The Plant Cell and Plant Physiology in 2019 Based on Altmetric Scores
Pubs Pages, Research
HAPPY NEW YEAR, PLANT BIOLOGY COMMUNITY! What a year 2019 was! So many wonderful things happened. ASPB hosted another successful Plant Biology meeting in San Jose, CA. We spent the year celebrating The Plant Cell's 30th anniversary (check…
Review: Matrix redox physiology governs the regulation of plant mitochondrial metabolism through post-translational protein modifications
Plant Science Research Weekly
Mitochondrial metabolism provides ATP and reducing power to drive myriad reactions in the plant cell, and is constantly being fine-tuned in response to environment and demands. Post-translational modifications (PTMs) of proteins, including redox reactions of methionine and cysteine and carbamylation…
Special Issue: New perspectives on crassulacean acid metabolism biology
Plant Science Research WeeklyCrassulacean acid metabolism (CAM) is a water-conserving strategy in which stomata open at night and carbon is stored until daytime photosynthesis provides the energy to fix it. This special issue of the Journal of Experimental Botany, edited by Hultine, Cushman, and Williams, brings together a set of…
Direct conversion of carlactonoic acid to orobanchol by cytochrome P450 CYP722C in strigolactone biosynthesis
Plant Science Research Weekly
Strigolactones (SL) are a compounds that play important roles as phytohormones and as a rhizosphere signaling. Despite the great advances in their research that occurred recently, their biosynthetic pathway is still not well understood. Until now, the pathway leading to the precursor carlactonic…
Review: The impact of synthetic biology for future agriculture and nutrition
Plant Science Research WeeklyThe synthetic biology field is going to be important for the decade we began in order to face climate challenges, including food security. However, plant synthetic biology lags behind bacterial and other eukaryotic systems. Roell and Zurbriggen summarize in this review, many of the projects that are…
Pheophorbide a may regulate jasmonate signaling during dark-induced senescence
Plant Science Research Weekly
During leaf senescence, nitrogen-rich chlorophyll is broken down through a regulated process so that nitrogen-containing compounds can be reassimilated into the plant body. Chlorophyll catabolites are sequestered in the vacuole as linear tetrapyrroles known as phyllobilins, produced through the action…
The γ-tubulin complex protein GCP6 in crucial for spindle morphogenesis but not essential for microtubule reorganization in Arabidopsis (OA)
Plant Science Research Weekly
During cell division, cells require to form mitotic spindle and these mitotic spindles are basically newly formed microtubules. The formation of new microtubules depends on γ-tubulin. Along with 5 GPCs (γ-tubulin protein complex), γ-tubulin form γTuRC (γ-tubulin ring complex) and it facilitates…
Metabolite regulatory interactions control plant respiratory metabolism via Target of Rapamycin (TOR) kinase activation
Plant Science Research Weekly
The rate of mitochondrial respiration is highly dynamic and responds to numerous endogenous and exogenous factors. Here, O’Leary et al. have measured mitochondrial respiration (through O2 production) in response to various metabolites in leaf discs over several hours, to address not only post-translational…
R-Loop Mediated trans Action of the APOLO Long Noncoding RNA
Plant Science Research Weekly
It was shown that the Arabidopsis intergenic long noncoding RNA (LncRNA) APOLO (AUXIN-REGULATED PROMOTER LOOP) modulates in cis its neighbor gene PID forming a chromatin loop. However, it remained unknown whether it can act also in trans modulating the expression of other genes. Now, Ariel et…
Autoregulation of RCO by low-affinity binding modulates cytokinin action and shapes leaf diversity (Curr. Biol)
Plant Science Research WeeklyREDUCED COMPLEXITY (RCO) is the main homeodomain transcription factor (TF) responsible for leaf complexity in cruciferous plants. RCO is lost in the model Arabidopsis with simple leaves but present in the genome of Cardamine hirsuta, a good model for leaf morphology traits. However, little is known about…
Restriction Release: improved maize transformation efficiency
Plant Physiology, Plant Physiology: News and Views, ResearchMagdalena M. Julkowska
[email protected]
Improvement of crops using traditional breeding is too slow to ensure food production able to sustain the growing human population, especially in the face of climate change (Hickey et al., 2019). Transformation methods for monocot crops depend…
Xylem-mobile Oxylipins are Critical Regulators of Induced Systemic Resistance in Maize
Research, The Plant Cell, The Plant Cell: In BriefIn addition to promoting plant growth and development, the colonization of roots by beneficial microorganisms often provides aboveground tissues with enhanced resistance to pathogen attack. This form of resistance, referred to as ‘induced systemic resistance’ (ISR), relies on the long-distance movement…
Plant Science Research Weekly: January 17
Blog, WWR Full PostGuest Editor :
Facundo Romani
I am in an Argentinean PhD student at Universidad Nacional del Litoral (Santa Fe, Argentina) and current ASPB Plantae Fellow. I am about to finish my PhD program, during past years I worked with Javier Moreno as supervisor and spent a long stay at Monash University…
Energy vs growth: Plant nutritional decisions are made by TOR
Research, The Plant Cell, The Plant Cell: In a NutshellO’Leary et al. show that the TOR signalling pathway in plants responds to amino acid levels by eliciting regulatory effects on respiratory energy metabolism at night, uniting a hallmark mechanism of TOR regulation across eukaryotes. Plant Cell https://doi.org/10.1105/tpc.19.00157
By Brendan O’Leary…
Keep it steamy: improved quantification of the humidity within the leaf
Plant Physiology, Plant Physiology: News and Views, ResearchMagdalena M. Julkowska
[email protected]
Stomata are the gatekeepers of plant water status, regulating the balance between plant CO2 uptake and water loss. Stomatal conductance (gs) can be estimated by microscopy of wax or plastic leaf surface imprints, but this technique is time…
Taking Down Plant Communication Channels to Invade
Research, The Plant Cell, The Plant Cell: In a NutshellAung et al. reveal that pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues.
Plant Cell https://doi.org/10.1105/tpc.19.00707
By Kyaw Aung and Sheng Yang He
Background: Multicellular organisms like animals and plants host a multitude of microorganisms.…
THE PLANT CELL Welcomes New Assistant Features Editors
Blog, Pubs Pages, Research, The Plant Cell, The Plant Cell: NewsThe Plant Cell welcomes 12 new Assistant Features Editors (AFEs) for 2020. They join six continuing AFEs who started in 2019. We would also like to thank all of the original AFEs who stepped down from the editorial board in 2018-2019, who helped us to establish the program and provided valuable input…
AvrRpm1, a 28-year Old Mystery Solved
Research, The Plant Cell, The Plant Cell: In a NutshellReddit et al. show that an effector protein from a pathogen modifies a host factor by ADP ribosylation, thereby activating defenses.
The Plant Cell https://doi.org/10.1105/tpc.19.00020
Background:
To protect themselves against disease, plants employ a family of intracellular receptors called…
How To Identify Autophagy Modulators
Plant Physiology, Plant Physiology: News and Views, ResearchAuthor: Masanori Izumi
Affiliation: RIKEN Center for Sustainable Resource Science, Wako 351-0198, Japan
[email protected]
Autophagy is the ubiquitous process in eukaryotes leading to the degradation of intracellular components, during which a portion of the cytoplasm, including organelles,…
Personal Trainer: bHLH121 Functions Upstream of a Transcriptional Network of Heavy Lifters Involved in Balancing Iron Levels
Research, The Plant Cell, The Plant Cell: In BriefIron is a cofactor of numerous plant proteins that function in processes ranging from redox reactions during photosynthesis to respiration. Typical soils contain approximately 1–5% iron, but much of this iron is not readily accessible to plants due to low solubility. Nongraminaceous plants help solubilize…
Recognizing Plant Cell authors: Peixin Huang
The Plant Cell, The Plant Cell: Author ProfilesPeixin Huang, first author of Salicylic Acid Suppresses Apical Hook Formation via NPR1-Mediated Repression of EIN3/EIL1 in Arabidopsis
Current Position: Visiting Research Scholar in Dr. Hongwei Guo’s laboratory, Department of Biology, Southern University of Science and Technology (SUSTech), Shenzhen,…
NTRC: a key regulatory hub in carbon metabolism and redox balance in developing tomato fruits
Plant Physiology, Plant Physiology: News and Views, ResearchMaria Grazia Annunziata
Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
ORCID ID: 0000-0001-8593-1741
By acting as redox regulatory factor, NADPH-dependent thioredoxin reductase C (NTRC) is involved in many metabolic processes as well as plastid biogenesis. It…
How plants tolerate too-close vegetation - plants get tolerant to other plants
Research, The Plant Cell, The Plant Cell: In a NutshellMolina-Contreras et al. show how differences in photoreceptors produce the differing shade responses of Arabidopsis and Cardamine.
https://doi.org/10.1105/tpc.19.00275
by Sandi PAULIŠIĆ 1 and Jaime F. MARTINEZ-GARCIA 1,2
1, Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB.
2,…
Review. Diatom molecular research comes of age: Model species for studying phytoplankton biology and diversity (Plant Cell)
Plant Science Research WeeklyDiatoms are photosynthetic eukaryotes and contribute substantially to global carbon fixation. They are distantly related to green plants, having shared the same primary endosymbiotic event, although they subsequently underwent additional secondary endosymbioses. There are over 100,000 species of diatoms,…
Review: Role of blue and red light in stomatal dynamic behaviour (J Exp Bot)
Plant Science Research WeeklyGuard cells are extremely sensitive and dynamic, and their behaviour controls rates of gas exchange and transpiration, which affect evaporative cooling and transport in the xylem. Matthews et al. review the roles of light signalling pathways in guard cell responses. Cues that control guard cell ion channels…
Combinatorial interactions of the LEC1 transcription factor specify diverse developmental programs during soybean seed development (PNAS) ($)
Plant Science Research WeeklyLEC1 (LEAFY COTYLEDON 1) transcriptional factor regulates multiple developmental processes during different stages of seed development including macromolecule accumulation, inhibition of germination and morphogenesis. In this paper Jo et al., have uncovered the mechanism of LEC1 functioning with other…
The Arabidopsis receptor kinase IRK is polarized and represses specific cell division (Devel. Cell) ($)
Plant Science Research WeeklyOrientation of cell division decides daughter cell fate and is fundamentally important for tissue patterning and morphology. For instance, asymmetric cell division leads to the generation of new cell types; in contrast, symmetric division produces cells with similar identity in a proliferative manner.…
Promotion of BR biosynthesis by miR444 is required for ammonium-triggered inhibition of root growth (Plant Physiol.) ($)
Plant Science Research WeeklyNitrogen, as one of the most important plant nutrients, profoundly affects root growth. Nitrogen is usually taken up in one of two forms, nitrate (NO3-) or ammonium (NH4+), and the two forms affect root growth differently. Here, Jiao et al. demonstrate a connection between ammonium, a small RNA, and…
Pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues (Plant Cell)
Plant Science Research WeeklyPlasmodesmata are regulated channels that connect adjacent cells, allowing movement of metabolites, RNA, proteins, and pathogens. Plants close their plasmodesmata as part of their immune response, but this closure can be interfered with by pathogens. Aung et al. examined the repertoire of effector proteins…
Resistant tomato restricts colonization and invasion by the pathogen Ralstonia solanacearum at four organismal levels (J Exp Bot)
Plant Science Research WeeklyRalstonia solanacearum is a pathogenic bacterium that infects many important crop species, including tomato. Following invasion into the roots, the bacteria move upwards into the shoot and cause dramatic wilting. Previous studies have identified moderately and highly resistant lines. Here, Planas-Marquès…
Medicago-Sinorhizobium-Ralstonia co-infection reveals legume nodules as pathogen confined infection sites developing weak defenses (Curr. Biol.)
Plant Science Research WeeklyThe pathogenic bacterium Ralstonia solanacearum enters roots through wounds and also at root tips. It can also infect legume nodules. Benezech et al. investigated how this infection occurs, and how it is affected by and affects nitrogen fixation. The authors found that nodules are as permissive of Ralstonia…
High-frequency random DNA insertions upon co-delivery of CRISPR-Cas9 ribonucleoprotein and selectable marker plasmid in rice (Sci Reports)
Plant Science Research WeeklyGenome editing through CRISPR/Cas9 holds so much promise for plant breeders, including potentially the ability to overcome the public’s displeasure with conventional GMOs. Still, the gene-editing RNAs and enzymes must get into the plant cell in order to work. Banakar et al. have compared three methods…
Plant Science Research Weekly: January 10
Blog, WWR Full PostReview. Diatom molecular research comes of age: Model species for studying phytoplankton biology and diversity
Diatoms are photosynthetic eukaryotes and contribute substantially to global carbon fixation. They are distantly related to green plants, having shared the same primary endosymbiotic event,…
A membrane-bound cellulase in time and space
Research, The Plant Cell, The Plant Cell: In a NutshellNagashima et al. investigate molecular mechanisms for the sorting of a membrane protein KORRIGAN 1 (KOR1) in plant cells.
Plant Cell https://doi.org/10.1105/tpc.19.00714
By Y. Nagashima1, and H. Koiwa1,2
1Vegetable and Fruit Improvement Center and Department of Horticultural Sciences, Texas…
Recognizing Plant Direct first authors: Meng Xie
Plant Direct, Plant Direct: Author ProfilesMeng Xie, first author of Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect
Current Position: Postdoctoral Associate, Center for Bioenergy Innovation, Oak Ridge National Laboratory; Department of Plant Sciences,…
Recognizing Plant Cell authors: Yasuhito Sakuraba
The Plant Cell, The Plant Cell: Author ProfilesYasuhito Sakuraba, first author of Multilayered regulation of membrane-bound ONAC054 is essential for abscisic acid-induced leaf senescence in rice
Current Position: Professor (Assistant), Biotechnology Research Center, The University of Tokyo, Japan
Education: Ph.D. in Life Science, Hokkaido University,…
Recognizing Plant Physiology authors: Qi Li
Plant Physiology, Plant Physiology: Author ProfilesQi Li, first author of Perception of damaged self in plants
Current Position: Postdoc at University of Florida
Education: BS and PhD in Shandong Agricultural University
Non-scientific Interests: music, running, hiking
Brief bio: I am a postdoctoral associated at University of Florida, supervised…
Recognizing Plant Cell authors: Kyaw Aung
The Plant Cell, The Plant Cell: Author ProfilesKyaw Aung, first author of Pathogenic bacteria target plant plasmodesmata to colonize and invade surrounding tissues
Current Position: Assistant Professor
Education: PhD in Plant Biology from Michigan State University, MS and BS in Horticulture from National Chung Hsing University, Taiwan
Non-scientific…
Recognizing Plant Direct authors: Cindy M. Munoz
Plant Direct, Plant Direct: Author ProfilesCindy M. Munoz, first author of Dimensionless Numbers to Study Cell Wall Deformation of Stiff Mutants of Phycomyces blakesleeanus
Current Position: Faculty in Mechanical Engineering, College of Engineering, Design, and Computing, University of Colorado Denver, Denver, Colorado
Education:
PhD…
Recognizing Plant Physiology authors: Wengui Lin
Plant Physiology, Plant Physiology: Author ProfilesWengui Lin, co-first author of Analysis of Soybean Long Non-coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts
Current Position: PhD candidate
Education: 2011 – 2015 Northeastern University, Bachelor degree; 2015 – Present The Chinese University of Hong Kong, PhD candidate
Non-scientific…
Recognizing Plant Physiology authors: Xiao Lin
Plant Physiology, Plant Physiology: Author ProfilesXiao Lin, co-first author of Analysis of Soybean Long Non-coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts
Current Position: PhD candidate, The Chinese University of Hong Kong
Education: PhD in Biochemistry (2020), The Chinese University of Hong Kong
Non-scientific Interests: Our…
Plant Physiology welcomes 26 new Assistant Features Editors
Blog, Plant Physiology: Editorials, Pubs PagesAt the beginning of 2018 Plant Physiology initiated a program to introduce several promising early-career scientists to the editorial board and engage their expertise in assessing and writing about research published in the journal. Over the past two years these scientists brought their passion for science…
WRKY1 integrates cellular nitrogen and light-energy resources in Arabidopsis thaliana
Plant Physiology, Plant Physiology: News and Views, ResearchTessa Moses
The Institute of Quantitative Biology, Biochemistry and Biotechnology (IQB3), The King’s Buildings, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom.
E-mail: [email protected], ORCID ID: 0000-0001-9366-4727
WRKY1 is a member of the WRKY transcription factor family…
Phosphorus Sensing by LST8 Acts as a TOR Guide for Cell Growth in Chlamydomonas
Research, The Plant Cell, The Plant Cell: In BriefPlant cell growth is often limited by the availability of two key nutrients, phosphorus (P) and nitrogen (N). As in mammals and yeast, a kinase known as TOR (target of rapamycin) is a key nutrient-responsive regulator of primary metabolism and cell growth in plants (Gonzalez and Hall, 2017; Dobrenel…
Casting a Network to Capture Vascular Development
Research, The Plant Cell, The Plant Cell: In a NutshellSmit et al. uncover a feed-forward loop that controls vascular development in Arabidopsis. Plant Cell https://doi.org/10.1105/tpc.19.00562
By Margot E. Smit1, Siobhán M. Brady2, and J. Peter Etchells3
1 Stanford University
2 UC Davis
3 Durham University
Background: Vascular tissues…
Recognizing Plant Physiology authors: Ignacio Lescano
Plant Physiology, Plant Physiology: Author ProfilesIgnacio Lescano, first author of Arabidopsis thaliana Ureide Permease 5 (AtUPS5) connects cell compartments involved in Ureide metabolism
Current Position: Postdoc in the Plant biology laboratory, CIQUIBIC-CONICET (Argentina)
Education: Degree in Biology and Ph.D. in Biology (National University…
Recognizing Plant Direct authors: Christopher John Till
Plant Direct, Plant Direct: Author ProfilesChristopher John Till, first author of The Arabidopsis thaliana N‐recognin E3 ligase PROTEOLYSIS1 influences the immune response
Current Position: Scientist at Azotic technologies Ltd
Education: PhD in Biosciences, Department of Plant and Crop Sciences, Sutton Bonington, University of Nottingham.…
Recognizing Plant Cell authors: Brendan O’Leary
The Plant Cell, The Plant Cell: Author ProfilesBrendan O’Leary, first author of Metabolite regulatory interactions control plant respiratory metabolism via Target of Rapamycin (TOR) kinase activation
Current Position: Postdoc, Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Australia
Education:…
Recognizing Plant Physiology authors: Maryam Foroozani
Plant Physiology, Plant Physiology: Author ProfilesMaryam Foroozani, first author of Low-phosphate chromatin dynamics predict a cell wall remodeling network in rice shoots
Current Position: Ph.D. student in the lab of Dr. Aaron Smith at Louisiana State University
Education: M.Sc. in Plant Cell & Developmental Biology, Shiraz University, Shiraz,…
Review: The nanoscale organization of the plasma membrane and its importance in signaling – a proteolipid perspective (Plant Physiol)
Plant Science Research WeeklyAmple evidence shows that rather than being homogenous, plasma membrane lipids and proteins form distinct nanodomains. Jallais and Ott review plant plasma membrane nanodomains, and their important contributions to receptor-mediated signaling. The authors discuss methods for the study of membrane nanodomains,…
Opinion. A return to the wild: Root exudates and food security (Trends Plant Sci)
Plant Science Research WeeklyMy dog is a fantastic companion, but it’s obvious he could never fend for himself; domestication has eliminated his ancestral survival skills. Likewise, most crop plants thrive under human care, but have lost many of the traits that would help them survive in harsh conditions. Preece and Peñuelas…
Review: Tomato fruit water accumulation and solute metabolism under water shortage (J. Exp. Bot.)
Plant Science Research WeeklyDeficit irrigation is water-conserving strategy in which a growing plant is given just enough but never too much water. Previous studies have shown myriad physiological changes caused by deficit irrigation including decreased growth rate and shoot:root ratio, and also a lower fruit water content. Here,…
Review: Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding (Nature Genetics)
Plant Science Research WeeklyCrop diversity is fundamental to safeguarding global food security. The high-yielding, input-responsive cultivars developed post-green revolution led to the replacement of traditional landraces that harbour beneficial genes and alleles governing biotic and abiotic stress resistance and nutritional quality…
A SAC phosphoinositide phosphatase controls rice development via hydrolyzing PI4P and PI(4,5)P2 (Plant Physiol)
Plant Science Research WeeklyAs their name suggests, phosphoinositide (PI) phosphatases remove phosphates from phosphoinositides (try saying that fast!). Because the phosphorylation status of a membrane-bound PI determines which proteins it interacts with, PI phosphatases and kinases contribute to membrane functions and dynamics.…
Plasma membrane domain patterning and self-reinforcing polarity in Arabidopsis (Devel. Cell)
Plant Science Research WeeklyPhosphoinositides (PIs) are specialized membrane lipids that contribute to membrane nanodomains, which affect protein localizations and vesicle trafficking. Previous studies have implicated PIs in the polar localization of auxin-transporter PIN proteins, and, in roots, the PIN-regulators PAX and BRX.…
Over‐accumulation of abscisic acid in transgenic tomato plants increases the risk of hydraulic failure (Plant Cell Environ.)
Plant Science Research WeeklyABA enhances stomatal closure and so decreases transpiration. Several studies have shown that increasing ABA levels can increase water-use efficiency, so this strategy has been investigated with the goal of obtaining “more crop per drop”. Lamarque et al. investigated physiological and hydraulic effects…
Subdivision of light signaling networks contributes to partitioning of C4 photosynthesis (Plant Physiol)
Plant Science Research WeeklySome plants such as Zea mays partition different components of the photosynthetic pathway in mesophyll cells (MC) and bundle sheath cells (BSC) in a process known as two-cell C4 photosynthesis. For example, light-harvesting reactions carried out by photosystem I and II (PSI and PSII) occur only in the…
Plant Science Research Weekly: January 3rd
Blog, WWR Full PostReview: The nanoscale organization of the plasma membrane and its importance in signaling – a proteolipid perspective
Ample evidence shows that rather than being homogenous, plasma membrane lipids and proteins form distinct nanodomains. Jallais and Ott review plant plasma membrane nanodomains, and…
Simulation modeling platform provides a powerful tool for identifying optimal traits and management practices for wheat production
Plant Physiology, Plant Physiology: News and Views, ResearchAuthor: Robert P Skelton1
[email protected]
Affiliation: Dept. of Integrative Biology, University of California Berkeley, Berkeley, CA, 94720, USA
Global demand for food security places an emphasis on a need to improve crop yield. The complexity of plant development and its interaction…
The spikelet, a different “flower” in rice
Research, The Plant Cell, The Plant Cell: In a NutshellDescriptive paragraph. Plant Cell https://doi.org/10.1105/tpc.18.00682
By Hui Zhuang and Yunfeng Li
Background: The spikelet, often mistaken for a “flower”, is actually an inflorescence unit and can produce one or more florets in some species of grass. This implies that it could be possible…
Recognizing Plant Direct authors: Rumen Ivanov
Plant Direct, Plant Direct: Author ProfilesRumen Ivanov, co-first author of Mobility and localization of the iron deficiency-induced transcription factor bHLH039 change in the presence of FIT
Current position: Senior Researcher, Institute of Botany, Heinrich Heine University, Düsseldorf, Germany
Education: National High School of Mathematics…
Recognizing Plant Direct authors: Ksenia Trofimov
Plant Direct, Plant Direct: Author ProfilesKsenia Trofimov, co-first author of Mobility and localization of the iron deficiency-induced transcription factor bHLH039 change in the presence of FIT
Current Position: PhD Student, Institute of Botany, Heinrich Heine University, Düsseldorf, Germany
Education: B.Sc. and M.Sc. in Biology (Molecular…
ASPB at PAG! (Jan 12-14, 2020)
Blog, Pubs Pages
Are you planning to be in San Diego in January for the Plant and Animal Genome (PAG) meeting? The American Society of Plant Biologists (ASPB) is exhibiting there and we would love to meet you.
Come by and see us at booth 634. Learn more about our journals, The Plant Cell, Plant Physiology, and…
Special Current Opinion in Biotechnology issue Issue: Plant Biotechnology
Plant Science Research WeeklySince most of us will have a few days off this coming week as we welcome in 2020, I’d like to highlight some of the engrossing reviews in this special issue of Current Opinion in Biotechnology, edited by Ralf Reski, Gary Foster & Ed Rybicki. Several of the articles focus on Molecular Pharming,…
Review: Molecular bases of responses to abiotic stress in trees (J. Exp. Bot)
Plant Science Research WeeklyMuch of our understanding of abiotic stress response comes from studies on short-lived annual plants, for good reasons: they are small and easy to study, their short-generation time makes them amenable to genetic studies, and most of our food comes from annual plants. Trees are more difficult to study,…
Review: Surface sensor systems in plant immunity (Plant Physiol)
Plant Science Research WeeklyThe first line of defense is detection. Plants have numerous cell-surface receptor proteins (Pattern Recognition Receptors, PRRs) that recognize potentially harmful pathogens as well as endogenous molecules that suggest damage, known as Damage Associated Molecular Patterns or DAMPS and phytocytokines…
Control of nitrogen fixation in bacteria that associate with cereals (Nature Microbiol)
Plant Science Research WeeklyLegumes benefit from mutualistic symbioses with Rhizobia bacteria, which are induced to fix nitrogen when inside of the nodules produced by the plant. Cereals also associate with Rhizobia, but without nodules they don’t fix nitrogen. Ryu et al. set out to engineer inducible nitrogenase activity in…
An artificial metalloenzyme biosensor can detect ethylene gas in fruits and Arabidopsis leaves (Nature Comms)
Plant Science Research WeeklyBiosensors have provided abundant information about the distribution of target enzymes, for example auxin, revealing much about their roles in plant physiology and development. Ethylene is a tiny (C2H4) gaseous hormone that hasn’t been very amenable to the development of biosensors. Here, Vong et al.…
Rapid customization of Solanaceae fruit crops for urban agriculture ($) (Nature Biotech)
Plant Science Research WeeklyNumerous genes have been identified that modify shoot architecture, which has allowed breeding of varieties for specific purposes and environments. Here, Kwon et al. describe how they have used gene editing to modify several of these genes to produce tomatoes and groundcherries that are compact and rapid…
Successive passaging of plant associated microbiome reveals robust habitat and host genotype-dependent selection (PNAS)
Plant Science Research WeeklyStudy of the plant microbiome can contribute to sustainable agricultural systems through improvements to plant health and nutrition. One goal has been to select and design microbiome communities for specific functions. In a recent article, Morella et al. have used an experimental evolution approach to…
A practical guide for fluorophore selection for FRET experiments in plants (Plant Direct)
Plant Science Research WeeklyProtein-protein interactions modulate the activities of many proteins, i.e., the signaling specificity of Receptor-like kinases (RLK). Förster Resonance Energy Transfer (FRET) allows the study of the dynamics of protein-protein interactions in live plants; this technique is based on energy transfer…
Cleavage of a pathogen apoplastic protein by plant subtilases activates immunity
Plant Science Research WeeklyPlant-pathogen interactions are shaped by a dynamic signaling crosstalk that often leads to an arms-race between plants and pathogens. The initial pathogenic invasion starts in the apoplast, which serves as a major battlefield. This extracellular space is a harsh environment enriched with hydrolytic…
Plant gene editing through de novo induction of meristems ($) (Nature Biotechnol)
Plant Science Research WeeklyA fast method of gene editing using Agrobacterium was developed to deliver combinations of the developmental regulators including WUSCHEL and SHOOT MERISTEMLESS along with gene-editing reagents. The expression of specific developmental regulators led to the induction of meristems and expression of the…
Plant Science Research Weekly: December 27
Blog, WWR Full PostSpecial Current Opinion in Biotechnology issue Issue: Plant Biotechnology
Since most of us will have a few days off this coming week as we welcome in 2020, I’d like to highlight some of the engrossing reviews in this special issue of Current Opinion in Biotechnology, edited by Ralf Reski, Gary…
Stiffening stems: identification of the stiff1 gene involved in maize stalk strength
Research, The Plant Cell, The Plant Cell: In BriefStalk lodging, a structural failure in which crop stalks break prior to harvest, can result in high grain moisture, reduce grain quality, and cause harvesting difficulties. For the popular high-yielding cereal maize (Zea mays), lodging may result in global annual yield reductions of approximately 5-20%…
No Stakes for High Strength Corn
Plant Physiology, Plant Physiology: News and Views, ResearchKim L Johnson
La Trobe Institute for Agriculture & Food, Department of Animal, Plant and Soil Sciences, La Trobe University, Bundoora, Victoria 3086, Australia
In September 2019 hurricane Dorian swept across to the southeast coast of the USA and strong winds and downpours led to major crop…
Review: Pervasive human-driven decline of life on Earth points to the need for transformative change (Science)
Plant Science Research WeeklyReading this review by Diaz et al. feels a bit like reading a bad report card. Although we know we’re failing in our role as Earth’s stewards, we don’t always want to be reminded of this. But, in this case we need to read and act on the suggestions for improvement. The authors review the findings…
Plants make galls to accommodate foreigners: some are friends most are foes (New Phytol)
Plant Science Research WeeklyGall formation by plants is a commonly-seen phenomenon that occurs in response to foreign entities (here called “gall-inducers”) such as viruses, bacteria, fungi, nematodes, etc. In this review Harris and Pitzschke set out criteria for what is and is not a gall; by definition the gall is a developmental…
Review: The many roads to (and from) multicellularity (J. Exp. Bot)
Plant Science Research WeeklyMulticellularity is without doubt a fantastic fluke. We know that it arose independently in plants and animals, but how many times? And is there a common “predisposition” to multicellularity in the universal common ancestor? These are the questions addressed in this review by Niklas and Newman. Looking…
Rapid single-step affinity purification of HA-tagged plant mitochondria (Plant Physiol)
Plant Science Research WeeklyIn the middle part of the 20th century, cell biology leapt forward with the development of differential centrifugation methods for purifying subcellular compartments. However, these methods require large amounts of starting material and can suffer from contamination. Kuhnert et al. present a new simple…
Reprogramming of root cells during nitrogen-fixing symbiosis involves dynamic polysome association of coding and non-coding RNAs (Plant Cell)
Plant Science Research WeeklyKnowing RNA abundance is nice, but in most cases protein abundance is more biologically interesting. Traubenik et al. used TRAP (Translating Ribosome Affinity Purification) to examine efficiency of translation and contributions of non-coding and alternatively spliced RNAs during the establishment…
Identification of low-abundant lipid droplet proteins in seeds and seedlings (Plant Physiol)
Plant Science Research WeeklyThe ability of seeds to pack nutrients into dense stable capsules transformed plants’ and animals’ ability to thrive on land (imagine getting through your day without eating any foods derived from seeds or animals that eat seeds). Within many seeds, nutrients are packaged in lipid droplets, with…
Plant Science Research Weekly: December 20th
WWR Full PostReview: Pervasive human-driven decline of life on Earth points to the need for transformative change
Reading this review by Diaz et al. feels a bit like reading a bad report card. Although we know we’re failing in our role as Earth’s stewards, we don’t always want to be reminded of this. But,…
Mightier than Muscle: A Near-atomic View of Pollen Actin Filaments
Research, The Plant Cell, The Plant Cell: In a NutshellBeyond its well-known role in muscle contraction, the cytoskeletal component actin participates in many critical cellular processes. Globular actin polymerizes into thin, flexible filaments that assemble into dynamic higher-order structures, such as bundles and networks. In addition to providing mechanical…
Recognizing Plant Cell authors: Fangming Wu
The Plant Cell, The Plant Cell: Author ProfilesFangming Wu, first author of Mediator Subunit MED25 Couples Alternative Splicing of JAZ Genes with Fine Tuning Jasmonate Signaling
Current Position: Assistant Professor, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China
Education: Ph.D. in Beijing Normal…
Recognizing Plant Cell authors: Amy Baetsen-Young
The Plant Cell, The Plant Cell: Author ProfilesAmy Baetsen-Young, first author of Fusarium virguliforme Transcriptional Plasticity Is Revealed by Host Colonization of Corn vs. Soybean
Current Position: Trait Development Lead at Syngenta Seeds in Stanton, MN, USA
Education: Ph.D. in Plant Pathology at Michigan State University, MI, USA. M.S.…
A Key Upstream Regulator of the Iron Homeostasis Regulatory Network
Research, The Plant Cell, The Plant Cell: In a NutshellGao et al. identify a transcription factor that regulates the expression of the large majority of genes involved in the iron homeostasis regulatory cascade. Plant Cell https://doi.org/10.1105/tpc.19.00541
By Fei Gao, Florence Vignols, and Christian Dubos
BPMP, Univ Montpellier, CNRS, INRA, SupAgro,…
Recognizing Plant Physiology authors: Boris Mayer
Plant Physiology, Plant Physiology: Author ProfilesBoris Mayer, first author of Treatment analogous to seasonal change demonstrates the integration of cold responses in Brachypodium distachyon
Current Position: PhD candidate, Department of Plant Science, McGill University, Montreal, Canada
Education: MSc (Plant Science), McGill University
Non-scientific…
Plant Tomosyn is a negative regulator of SNARE-mediated secretion in pollen
Plant Physiology: News and Views, ResearchEmily R Larson, [email protected]
Vesicle transport is one of those molecular processes that is easy to take for granted. From cell expansion and polarised growth to protein regulation and signalling, vesicle trafficking plays its unsung part. We tend to believe that we know a lot about this…
Recognizing Plant Physiology authors: Ansul Lokdarshi
Plant Physiology, Plant Physiology: Author ProfilesAnsul Lokdarshi, first author of ErbB-3 BINDING PROTEIN 1 Regulates Translation and Counteracts RETINOBLASTOMA RELATED to Maintain the Root Meristem
Current Position: Post-Doctoral Research Associate, The University of Tennessee, Knoxville
Education: Ph.D. Department of Biochemistry & Cellular…
Recognizing Plant Physiology authors: Baoda Han
Plant Physiology, Plant Physiology: Author ProfilesBaoda Han, first author of CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1) mediates plant resistance against Pseudomonas syringae
Current Position: Research Assistant
Education: M.S., Cell Biology, Northeast Forestry University, China, 2008-2011
Non-scientific Interests: swimming, singing, cooking, travel…
The Functions of Retinoblastoma-Related Proteins in Rice
Plant Physiology, Plant Physiology: On The InsideRETINOBLASTOMA was originally identified as a tumor suppressor gene in animals. A basic and core function of its protein is to control cell proliferation via regulating cell cycle entry. RB protein is also involved in regulating cell differentiation and organ specification. In plants, RBR (RB-Related)…
Jasmonic Acid and High Light and Heat Stress
Plant Physiology, Plant Physiology: On The InsidePlants often experience high light (HL) intensities in the field, many times in conjunction with elevated temperatures. Such conditions are a serious threat to agriculture production, because photosynthesis is highly sensitive to both HL intensities and high-temperature stress. During HL stress, the…
Glyphosate Resistance in Barnyard Grass
Plant Physiology, Plant Physiology: On The InsideGlyphosate is the world’s most commonly used herbicide, owing to its high efficacy, broad spectrum, and systemic mode of action. Most plant species cannot significantly metabolize glyphosate, which is a major factor contributing to its lethality in plants. However, the widespread adoption of glyphosate-tolerant…
Plant Calmodulin-Dependent NAD+ Kinase
Plant Physiology, Plant Physiology: On The InsideA common plant response to a variety of stresses is an influx of calcium (Ca2+) ions followed by an apoplastic burst of reactive oxygen species (ROS). This ROS burst is generated by Ca2+-dependent plasma membrane NADPH oxidases. A rapid increase in the NADP(H) pool size may be required to sustain the…
Recognizing Plant Physiology authors: Li Feng
Plant Physiology, Plant Physiology: Author ProfilesLi Feng, first author of An online database for exploring over 2,000 Arabidopsis small RNA libraries
Current Position: PhD student in Biomedical Engineering, SUSTech-HIT Joint Graduate/PhD Project, Department of Biology & Institute of Plant and Food Science, Southern University of Science and Technology…
Decoding Natural Variation in Chloroplast Size
Plant Physiology, Plant Physiology: News and Views, ResearchLynn GL Richardson
[email protected]
Department of Plant Biology, Michigan State University, East Lansing, MI 48824
Chloroplasts, like their cyanobacterial ancestors, use binary fission to divide and generate new organelles. The origins of the division machinery stem from both the original eukaryotic…
Ray Parenchymal Cells Contribute to Lignification
Plant Physiology, Plant Physiology: On The InsideIn conifers such as Norway spruce (Picea abies), lignin is a major cell wall constituent of secondary xylem (wood), forming approximately 27% of the dry weight. Lignin enhances the structural stability of wood as well as water transport through it. Lignification encompasses many steps, starting with…
Translation has something to say in nitrogen-fixing symbiosis
Research, The Plant Cell, The Plant Cell: In a NutshellTraubenik et al. highlight the importance of translational control and mRNA decay for successful establishment of the nitrogen-fixing symbiosis. Plant Cell https://doi.org/10.1105/tpc.19.00647
By Soledad Traubenik, Mauricio Reynoso, Flavio Blanco, and María Eugenia Zanetti
Background: Legume plants…
Plasmodesmatal Transport is Regulated by the Circadian Clock
Plant Physiology, Plant Physiology: On The InsidePlasmodesmata (PD) are membrane-bound tunnels that connect the cytosols of neighboring plant cells. The rate of PD transport between cells changes during the course of plant development. Forward genetic screens to identify factors controlling transport through PD have repeatedly revealed that chloroplasts…
Recognizing Plant Direct authors: María del Rosario Ramírez Flores
Plant Direct, Plant Direct: Author ProfilesMaría del Rosario Ramírez Flores, first author of Inoculation with the mycorrhizal fungus Rhizophagus irregularis modulates the relationship between root growth and nutrient content in maize (Zea mays ssp. mays L.)
Current Position: PhD student, Plant Biotechnology at Center of Research and Advances…
Recognizing Plant Physiology authors: Puneet Paul
Plant Physiology, Plant Physiology: Author ProfilesPuneet Paul, first author of MADS78 and MADS79 are essential regulators of early seed development in rice
Current Position: Post-Doctoral Research Associate at the Department of Agronomy and Horticulture, University of Nebraska-Lincoln
Education: Ph.D. in Plant Molecular Biology, Goethe University,…
Predicting adult complex traits from early development transcript data in maize
Research, The Plant Cell, The Plant Cell: In BriefAn enduring goal of biologists is to link variation in the genome to phenotype. The discovery of easily measurable genetic markers in the recent past has led to the identification of variants controlling different traits through linkage analysis. Subsequently, advances in high-throughput sequencing have…
PIF4 plays a conserved role in Solanum lycopersicum
Plant Physiology, Plant Physiology: News and Views, ResearchScott Hayes, [email protected]
The adoption of Arabidopsis thaliana as a model plant in the early 1980s led to a revolution in plant molecular genetics. Its diminutive size, rapid generation time and small genome made Arabidopsis a fantastic tool, allowing us to build a complex picture of the genetic…
Switching the direction of stem gravitropism by altering two amino acids in AtLAZY1 (Plant Phys)
Plant Science Research WeeklyIn a fascinating twist to the gravitropism story, Yoshihara and Spalding have managed to make a plant with shoots that don’t ignore gravity, but actually respond in the entirely inappropriate away. The LAZY genes were first identified from a rice mutant with a decreased response to gravity. In Arabidopsis…
Research update: GUN1 hit the mark in 2019
Plant Science Research Weekly
Chloroplasts are able to sense and respond to environmental signals. They send retrograde signals that inform the nucleus about their developmental stage and integrity. In response, the nucleus adjusts gene expression to optimize chloroplast recovery and adaptation. Back in 1993, a screen for genotypes…
Plant Science Research Weekly: December 13
Blog, WWR Full PostThis week we start with a short summary contributed by Charlotte Gommers hghlighting several papers published in 2019 that revealed new insights into an enigmatic plant gene, GUN1.
Research update: GUN1 hit the mark in 2019
Chloroplasts are able to sense and respond to environmental signals. They…
RGF1 controls root meristem size through ROS signaling (Nature)
Plant Science Research WeeklyStem cells are maintained in the stem-cell niche by intercellular interactions and signaling networks in which a peptide hormone, the root meristem growth factor 1 (RGF1), is involved. RGF1 is also important in the control of the size of the meristematic zone and in the stability of the PLETHORA (PLT)…
CSN5 of COP9 signalosome modulates heat-response of Arabidopsis (biomolecules)
Plant Science Research WeeklyCOP9 signalosome (CSN) is a conserved multi-subunit complex in higher eukaryotes that was originally identified as a regulator of plant photomorphogenesis. It functions by regulating ubiquitin-mediated protein stability, through the deneddylase enzymatic acitivity of the CSN5 subunit. CSN5 is encoded…
Increasing risks of multiple breadbasket failure under 1.5 and 2 °C global warming (Ag Systems)
Plant Science Research WeeklyCrop yields are vulnerable to rising temperatures and changes in precipitation. Here, Gaupp et al. model the projected crop yields at 1.5 versus 2.0 degrees of additional warming, as part of the HAPPI experiment (perhaps a misnomer: Half a degree Additional warming, Prognosis and Projected Impacts).…
Perspective: Challenging battles of plants with phloem-feeding insects and prokaryotic pathogens (PNAS)
Plant Science Research WeeklyMuch of our understanding of plant defense response is built upon the responses that occur in leaves. Many pathogens colonize the phloem system, which is both nutrient-rich and provides an easy conduit for spreading through systemically through the plant body. These phloem-inhabiting prokaryotic pathogens…
Unraveling cis and trans regulatory evolution during cotton domestication (Nature Comms)
Plant Science Research WeeklyPolyploidization leads to a myriad of changes in gene expression and organization of genomes and can supply the material for speciation, adaptation, and morphological innovation. The most cultivated cotton species, Gossypium hirsutum, is an allotetraploid species (AD genome) containing two subgenomes…
NONSTOP GLUMES 1 regulates spikelet development in rice (Plant Cell)
Plant Science Research WeeklyRecently, several genes affecting rice architecture have been identified that may increase yields by increasing the number of grains formed, but as yet the genetic control of rice inflorescence architecture and organ identity is still being worked out. Zhuang et al. identified mutants of the NONSTOP…
Review. Brassinosteroids: Multi-dimensional regulators of plant growth, development, and stress responses (Plant Cell)
Plant Science Research WeeklyIt’s been fifty years since the existence of brassinosteroids was shown, and about thirty since the awesome power of Arabidopsis genetics started to reveal the genes involved in its synthesis, perception and signaling. Nolan et al. review the highlights of brassinosteroid research and also more recent…
Recognizing Plant Cell authors: Shauni McGregor
The Plant Cell, The Plant Cell: Author ProfilesShauni McGregor, co-first author of A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis
Current Position: PhD student and the University of Sheffield
Education: BSc in Biological Sciences and MScR in developmental plant genetics from…
Recognizing Plant Cell authors: Margot Smit
The Plant Cell, The Plant Cell: Author ProfilesMargot Smit, co-first author of A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis
Current Position: HHMI postdoc in the group of Prof. Dr. Dominique Bergmann, Stanford University Department of Biology
Education: MSc in Biotechnology…
Recognizing Plant Physiology authors: Zhen Wang
Plant Physiology, Plant Physiology: Author ProfilesZhen Wang, co-first author of Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways
Current Position: Research Associate, Shanghai Center for Plant Stress Biology, Chinese Academy of Sciences, China
Education: Ph.D. in Genetics, Shanghai Institutes for Biological…
Recognizing Plant Physiology authors: Yechun Hong
Plant Physiology, Plant Physiology: Author ProfilesYechun Hong, co-first author of Two Chloroplast Proteins Negatively Regulate Plant Drought Resistance Through Separate Pathways
Current position: Ph.D. student, Shanghai center for plant stress biology, Chinese Academy of Sciences
Education: B.S., School of life science, Sun Yat-Sen University
Non-scientific…
Recognizing Plant Physiology authors: Erika Őszi
Plant Physiology, Plant Physiology: Author ProfilesErika Őszi, first author of E2FB interacts with RETINOBLASTOMA RELATED and regulates cell proliferation during leaf development
Current Position: Ph.D. student in the lab of Dr. Zoltán Magyar at the Biological Research Centre, Szeged, Hungary
Education: PhD and MSc in plant biology, BSc in molecular…
Recognizing Plant Physiology authors: Geng Ding
Plant Physiology, Plant Physiology: Author ProfilesGeng Ding, co-first author of Non-catalytic subunits facilitate quaternary organization of plastidic acetyl-CoA carboxylase
Current Position: Assistant Scientist, Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University
Education: Ph.D. in Molecular, Cellular and Developmental…
Recognizing Plant Physiology authors: Kiran-Kumar Shivaiah
Plant Physiology, Plant Physiology: Author ProfilesKiran-Kumar Shivaiah, co-first author of Non-catalytic subunits facilitate quaternary organization of plastidic acetyl-CoA carboxylase
Current Position: Research Associate, Plant Resilience Institute, Michigan State University
Education: Ph.D. in Biochemistry (Iowa State University), M.Sc in Biochemistry…
10 things you might not know about ASPB publications
Blog, Pubs PagesThe ASPB pubs department has a blog! It's not surprising you didn't know this #1 fact because this post is our first! But now that you know, you should check back here often to learn more about Plant Direct, Plant Physiology, and The Plant Cell. You will hear from our publications staff, our authors,…
Recognizing Plant Physiology authors: Muhammad Uzair
Plant Physiology, Plant Physiology: Author ProfilesMuhammad Uzair, first author of PERSISTENT TAPETAL CELL 2 is required for normal tapetal programmed cell death and pollen wall patterning
Current Position: Research Assistant (University of Hong Kong)
Education: M.Sc. (Hons.) Agriculture Biotechnology, Centre of Agricultural Biochemistry and Biotechnology…
Pyrethrin biosynthesis: From a phytohormone to specialized metabolite
Plant Physiology, Plant Physiology: News and Views, ResearchRaimund Nagel
Universität Leipzig
Department of Plant Physiology
Leipzig, Saxony 04103
Germany
[email protected]
Dalmatian chrysanthemum (Tanacetum cinerariifolium) contains pyrethrins, which are highly effective natural insecticides that are nontoxic to most animals and biodegradable.…
Lipid Rafts to the Rescue! Plants under Fungal Attack Recruit Phospholipase Dδ
Research, The Plant Cell, The Plant Cell: In BriefWhen your fort is under attack during battle, and the wall is breached, you can choose to fight, flee, or forgo. Plants, on the other hand, are left with little choice: they must fight. Winning any battle, though, depends on a multitude of factors, most notably your available arsenal, soldiers, and importantly,…
PIF8: a new player in far-red light signaling
Research, The Plant Cell, The Plant Cell: In a NutshellOh et al. identify a far-red light-specific role for PIF8.
Plant Cell https://doi.org/10.1105/tpc.19.00515
By Jeonghwa Oh, KAIST
Background: When plants are in the dark, their stems get longer to search for light. When reaching the light, plant photoreceptors called phytochromes perceive light…
Recognizing Plant Physiology authors: Laura Arribas-Hernández
Plant Physiology, Plant Physiology: Author ProfilesLaura Arribas-Hernández, first author of Occurrence and functions of m6A and other covalent modifications in plant mRNA
Current Position: Postdoctoral Researcher, University of Copenhagen
Education: PhD in Biochemistry at the University of Copenhagen (2015), BS and MS in Biology at Universidad…
The heat is on: maize pollen development after a heat wave
Plant Physiology, Plant Physiology: News and Views, ResearchThe yield of key food crops (i.e., wheat [Triticum aestivum], rice [Oryza sativa], maize [Zea mays], and sorghum [Sorghum biocolor]) relies on their production of seeds, while the propagation of almost all crops is seed-dependent. Seed set in turn relies on the production of flowers containing the male…
Recognizing Plant Direct authors: Shivani Upadhyaya
Plant Direct, Plant Direct: Author ProfilesShivani Upadhyaya, first author of Reciprocal regulation of photosynthesis and mitochondrial respiration by TOR kinase in Chlamydomonas reinhardtii
Current Position: Graduate Student, Tata Institute of Fundamental Research (TIFR), Mumbai, India
Education: M.Sc in Bioinformatics
Non-Scientific…
Recognizing Plant Physiology authors: Adrien Heymans
Plant Physiology, Plant Physiology: Author ProfilesAdrien Heymans, first author of GRANAR, a computational tool to better understand the functional importance of monocotyledon root anatomy
Current Position: PhD Student at the Earth and Life Institute, UCLouvain, Belgium
Education: Master degree in Bioengineering, agricultural sciences, UCLouvain,…
Recognizing Plant Direct authors: Renesh Bedre
Plant Direct, Plant Direct: Author ProfilesRenesh Bedre, first author of GenFam: A web application and database for gene family-based classification and functional enrichment analysis
Current Position: Assistant Research Scientist in Kranthi Mandadi laboratory at Texas A&M AgriLife Research and Extension Center, Weslaco, Texas
Education:…
Recognizing Plant Cell authors: Trevor Nolan
The Plant Cell, The Plant Cell: Author ProfilesTrevor Nolan, first author of Brassinosteroids: Multi-Dimensional Regulators of Plant Growth, Development, and Stress Responses
Current Position: Postdoc in the laboratory of Philip Benfey, Duke University and HHMI
Education: Ph.D. in Genetics from Iowa State University
Non-scientific Interests:…
Recognizing Plant Direct authors: Nooshin Omranian
Plant Direct, Plant Direct: Author ProfilesNooshin Omranian, co-first author of Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations
Current Position: Postdoctoral Research Associate in Max Planck Institute of Molecular Plant Physiology (MPIMP), Potsdam, Germany
Education: Ph. D. degree in Systems…
Recognizing Plant Direct authors: Prashant Pandey
Plant Direct, Plant Direct: Author ProfilesPrashant Pandey, co-first author of Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations
Current Position: Assistant Research Officer, The National Research Council of Canada, Saskatoon
Education: Ph. D. at Max Planck Institute of Molecular Plant Physiology,…
Recognizing Plant Physiology authors: Xue-Rong Zhou
Plant Physiology, Plant Physiology: Author ProfilesXue-Rong Zhou, first author of Reorganization of acyl flux through the lipid metabolic network in oil-accumulating tobacco leaves
Current Position: Senior Principal Research Scientist
Education: Ph.D. in Plant Molecular Virology, Chinese Academy of Sciences, China; M.Sc. in Molecular Genetics, Shanghai…
Recognizing Plant Physiology authors: Duorong Xu
Plant Physiology, Plant Physiology: Author ProfilesDuorong Xu, first author of VENOSA4, a human dNTPase SAMHD1 homolog, contributes to chloroplast development and abiotic stress tolerance
Current Position: PhD candidate in the group of PD Dr. Tatjana Kleine, Leister lab, Ludwig-Maximilians-University of Munich, Germany
Education: M.S. in Cell Biology,…
Recognizing Plant Cell authors: Fei Gao
The Plant Cell, The Plant Cell: Author ProfilesFei Gao, first author of The transcription factor bHLH121 interacts with bHLH105 (ILR3) and its closest homologues to regulate Fe homeostasis in Arabidopsis
Current Position: Ph.D. student in the lab of Dr. Christian Dubos at BPMP, INRA, CNRS, SupAgro, Univ Montpellier, Montpellier, France
Education:…
Recognizing Plant Physiology first authors: Naomi Cox
Plant Physiology, Plant Physiology: Author ProfilesNaomi Cox, first author of A novel upstream regulator of trichome development inhibitors
Current Position: PhD Candidate in Plant Molecular Biology at the University of Sheffield, UK and Visiting PhD Scholar at the International Rice Research Institute (IRRI), The Philippines
Education: MBiolSci…
Insect-damaged Arabidopsis moves like wounded Mimosa pudica (PNAS)
Plant Science Research WeeklyStroking leaves of the sensitive plant Mimosa pudica causes them to fold inwards, but when touched more aggressively the leaf petioles and petioles of distal untouched leaves collapse dramatically downwards (as seen in this video); the propagating electrical signal is called the slow wave potential.…
Review. Dare to change, the dynamics behind plasmodesmata-mediated cell-to-cell communication (COPB)
Plant Science Research WeeklyA new review by Petit et al. skillfully highlights the role of plasmodesmata at the interface between cell biology and whole-plant physiology. These tiny channels that connect plant cells determine what moves from cell-to-cell symplastically, so have roles in just about everything, from developmental…
From plasmodesma geometry to effective symplasmic permeability through biophysical modelling (eLIFE)
Plant Science Research WeeklyPlasmodesmata are tiny regulated channels that connect adjacent plant cells through which nutrients, signaling molecules and viruses can move. To try to resolve discrepancies between functional and structural studies, Deinum et al. have developed a model for plasmodesmatal permeability that predicts…
Primer: Rhynie chert ($) (Curr. Biol.)
Plant Science Research WeeklyThis short Primer by Strullu-Derrien et al. introduces the amazing early vascular plant fossils from the Rhynie chert. The fossils' high level of detail is a consequence of their being embedded in a glass-like silica matrix, possibly derived from hydrothermal springs. The fossils are approximately 407…
Conversion of Escherichia coli to generate all biomass carbon from CO2 (Cell)
Plant Science Research WeeklyPlants are photosynthetic autotrophs, meaning they use light energy to feed themselves, with carbon dioxide as a carbon source. Heterotrophs like E. coli require organic carbon. Here, Gleizer et al. have rewired the metabolism of E. coli to make it into a (non-photosynthetic) autotroph, meaning it can…
A new B-BOX containing protein regulates red light photomorphogenesis ($) (PNAS)
Plant Science Research WeeklyAs the primary red light photoreceptor in Arabidopsis, phyB affects various developmental processes, such as seed germination, shade avoidance, etc. PIF3 is a key repressor of phyB-mediated photomorphogenesis that is degraded in red light. Recently Heng et al. identified a positive regulator of red light…
Arabidopsis transcriptional response to fractional gravity during spaceflight under blue-light (Frontiers Plant Sci)
Plant Science Research WeeklyA plant’s response to a microgravity environment allows for dissection of molecular pathways governing gravity sensing and other integrated pathways, such as phototropism. Renewed interest in long-term space travel also requires that plant behavior and growth under microgravity is well-understood and…
Rice nitrogen nutrition is improved by association with a fungus carrying nitrogen-fixing endobacteria ($) (Plant Cell)
Plant Science Research WeeklyPreviously, growth-promoting endophytic (living within the plant) microbes were isolated from plants (narrowleaf cattail, Typha angustifolia) growing in a nutrient-poor site in an effort to identify new beneficial microbes. One of these identified is the fungus Rhodotorula mucilaginosa. Now, Paul et…
Phage combination therapies for bacterial wilt disease in tomato ($) (Nature Biotech)
Plant Science Research WeeklyBacteriophages are viruses that infect bacteria. As agents that weaken or destroy pathogens, they have shown therapeutic promise in human and plant disease treatment. Wang et al. studied the effect on pathogenic Ralstonia solanacearum of different phages individually and in combinations in the rhizosphere…
Antimicrobial solid media for screening non-sterile Arabidopsis thaliana seeds (bioRxiv)
Plant Science Research WeeklyTransgenic plant production often involves an agar-based selection step in which plants that have taken up the introduced DNA (containing a selectable marker) show resistance to a corresponding antibiotic. Typically, putatively transformed seeds are surface sterilized prior to plating so that microbes…
Assessing the sustainability of post-Green Revolution cereals in India ($) (PNAS)
Plant Science Research WeeklyThe major objectives of sustainable agriculture are to fulfill food requirements, maintain a safe environment and profitable economy, and withstand climate change. Here, Davis et al. discuss a multidimensional approach to achieve sustainable agriculture in India by transitioning some areas from growing…
Plant Science Research Weekly: December 6
Blog, WWR Full PostReview. Dare to change, the dynamics behind plasmodesmata-mediated cell-to-cell communication
A new review by Petit et al. skillfully highlights the role of plasmodesmata at the interface between cell biology and whole-plant physiology. These tiny channels that connect plant cells determine what…
Recognizing Plant Direct authors: Ze-Hua Guo
Plant Direct, Plant Direct: Author ProfilesZe-Hua Guo, first author of Arabidopsis cytosolic acyl-CoA-binding proteins function in determining seed oil composition
Current Position: Postdoctoral Fellow, University of Hong Kong, Pokfulam, Hong Kong, China
Education: PhD in Plant Molecular Biology at the University of Hong Kong (Hong Kong,…
Recognizing Plant Cell authors: Soledad Traubenik
The Plant Cell, The Plant Cell: Author ProfilesSoledad Traubenik, first author of Reprogramming of root cells during nitrogen-fixing symbiosis involves dynamic polysome association of coding and non-coding RNAs
Current Position: Ph.D. candidate at Dr. María Eugenia Zanetti and Dr. Flavio Blanco’s Root Biology lab, Institute of Biotechnology and…
Recognizing Plant Physiology authors: Alecia Biel
Plant Physiology, Plant Physiology: Author ProfilesAlecia Biel, first author of A role for plant KASH proteins in regulating stomatal dynamics
Current Position: PhD student, The Ohio State University, Columbus OH
Education: BS in Biology at Pennsylvania State University, University Park PA
Non-scientific Interests: reading sci/fi fantasy novels,…
Recognizing Plant Physiology authors: Weibing Yang
Plant Physiology, Plant Physiology: Author ProfilesWeibing Yang, first author of Visualization of Protein Coding, Long Non-coding and Nuclear RNAs by FISH in Sections of Shoot Apical Meristems and Developing Flowers
Current Position: Postdoctoral Research Associate, The Sainsbury Laboratory Cambridge University, UK
Education: Ph.D. in Genetics (Institute…
Recognizing Plant Direct first authors: Archana Kumari Srivastava
Plant Direct, Plant Direct: Author ProfilesArchana Kumari Srivastava, first author of MYC2 Regulates ARR16, a Component of Cytokinin Signaling Pathways, in Arabidopsis Seedling Development
Current Position: Research Associate in Medical Research Department, Healthcare Division, Research & Development at Emami Ltd., India
Education: Ph.D.…
Recognizing Plant Physiology authors: Sylvain Aubry
Plant Physiology, Plant Physiology: Author ProfilesSylvain Aubry, first author of Pheophorbide a may regulate jasmonate signalling during dark-induced senescence
Current Position: Senior Scientist at the University of Zürich, Switzerland
Education: PhD in Molecular Plant Physiology. University of Zürich
Non-scientific Interests: playing Raspberry…
An Improved Recombineering Toolset for Plants
Research, The Plant Cell, The Plant Cell: In a NutshellBrumos and Zhao et al. developed an improved set of genetic tools to make precise sequence modifications in large DNA fragments and used them to tag hundreds of plant genes, including those involved in auxin production. Plant Cell https://doi.org/10.1105/tpc.19.00431
By Javier Brumos, Anna Stepanova,…
Comment: Climate tipping points — too risky to bet against (Nature)
Plant Science Research WeeklyComment: Climate tipping points — too risky to bet against
This Comment in Nature by Lenton et al. (leaders in climate study and policy) is making headlines, as it points to the serious implications of continuing climate change. It’s worth looking at the article itself, not just the digested version.…
Review: Design and engineering of advanced plant optogenetics systems (TIPS)
Plant Science Research Weekly
Review: Design and engineering of advanced plant optogenetics systems
Optogenetics uses light-sensitive proteins to trigger specific outputs in the cell in response to particular wavelengths of light. Many optogenetic systems use chimeric proteins that contain different sensor and effector…
Biosynthesis of the nitrogenase active-site cofactor precursor NifB-co in Saccharomyces cerevisiae (PNAS)
Plant Science Research WeeklyNitrogenases are large, multisubunit enzymes that require complex metal cofactors. They are the only enzymes capable of fixing N2 into usable form, and are only produced by some archaea and bacteria; “nitrogen-fixing” legumes actually depend on the presence of their bacterial symbionts for this function.…
Widespread long-range cis-regulatory elements in the maize genome ($) (Nature Plants)
Plant Science Research WeeklyThe chromatin landscape is key in the regulation of gene expression. Many studies have been made in Arabidopsis, but its genomic architecture is different to other plants. Here Ricci et al. present a very comprehensive study of chromatin analysis in maize. This work includes a huge amount of sequencing…
The prevalence, evolution and chromatin signatures of plant regulatory elements ($) (Nature Plants)
Plant Science Research WeeklyWith a wide range of genome sizes and varying architectures, understanding the evolution and function of non-coding regions is not straightforward in plants. Nevertheless, many advances are coming out that will shed light on this complex scientific problem. Lu et al. performed ATAC-seq to study chromatin…
Dynamic ubiquitination determines transcriptional activity of the plant immune coactivator NPR1 (eLIFE)
Plant Science Research Weekly
Dynamic ubiquitination determines transcriptional activity of the plant immune coactivator NPR1
Plants (and animals) need to strike a delicate balance when activating their immune responses: not too much and not too little. The transcriptional coactivator NPR1 [nonexpressor of pathogenesis-related…
The use of high throughput phenotyping for assessment of heat stress-induced changes in Arabidopsis (bioRxiv)
Plant Science Research WeeklyWith global temperatures rising, tolerance to heat is becoming increasingly important as a breeding target for crop plants, but it is a highly complex response that includes processes including plant cooling capacity, growth recovery, and maintenance of photosynthesis. Using Arabidopsis, Gao et al. developed…
Evolution of carnivorous traps from planar leaves through simple shifts in gene expression (Science)
Plant Science Research WeeklyWhen is a leaf not a leaf? When it’s a trap. Just about everyone, including Charles Darwin, has been fascinated by carnivory in plants, which involves the development of structures that capture or trap food. Whitewoods, Gonçalves, Cheng et al. investigated how traps form in the humped bladderwort…
Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms (Mol Plant)
Plant Science Research Weekly
Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms
Comparative genomics has revealed that the angiosperms have experienced numerous whole-genome duplications (WGD), which have been proposed to have contributed to their global dominance. Following WGD, many of the…
Shared genetic control of root system architecture between Zea mays and Sorghum bicolor (Plant Physiol)
Plant Science Research WeeklyRoot research got a boost from Arabidopsis grown on Petri plants, but what do you do if you study something bigger, or want to see how roots grow in soil? Zheng et al. developed a new set of tools they call CREAMD-COFE [Core Root Excavation using Compressed-air (to extract the roots from soil), and Core…
Global transcriptome analysis reveals circadian control of splicing events in Arabidopsis thaliana (bioRxiv)
Plant Science Research WeeklyDevelopmental programming, metabolism and plant growth are regulated by the circadian rhythm that integrates environmental signals and plant growth. In this paper, Romanowski et al. have used the RNAseq approach to determine post-transcriptional regulation in Arabidopsis thaliana, specifically alternate…
Plant science research weekly: November 29
Blog, WWR Full PostReview: Design and engineering of advanced plant optogenetics systems
Optogenetics uses light-sensitive proteins to trigger specific outputs in the cell in response to particular wavelengths of light. Many optogenetic systems use chimeric proteins that contain different sensor and effector domains;…
Recognizing Plant Cell authors: Karnelia Paul
The Plant Cell, The Plant Cell: Author ProfilesKarnelia Paul, co-first author of A tripartite interaction among the basidiomycete Rhodotorula mucilaginosa, N2-fixing endobacteria, and rice improves nitrogen nutrition in plants
Current Position: PhD student in Department of Biotechnology and Dr. B.C. Guha Centre for Genetic Engineering and Biotechnology,…
Recognizing Plant Cell authors: Chinmay Saha
The Plant Cell, The Plant Cell: Author ProfilesChinmay Saha, co-first author of A tripartite interaction among the basidiomycete Rhodotorula mucilaginosa, N2-fixing endobacteria, and rice improves nitrogen nutrition in plants
Current Position: Faculty in Genome Science, School of Interdisciplinary Studies, University of Kalyani, Kalyani-741235,…
Attract or Defend: The CYP-associated Versatility of Terpenoids
Research, The Plant Cell, The Plant Cell: In BriefFloral scent, a blend of volatile organic compounds (VOCs), is a communication signal central to plant interactions. For example, VOCs attract pollinators when flowers are opened (Muhleman et al., 2015).
However, some plants do not cross-pollinate and depend less on VOCs. Flowers are fragile structures…
Proteases Help Cyanobacteria Survive Nutrient Starvation
Research, The Plant Cell, The Plant Cell: In a NutshellKrynická et al. uncover the critical role of the FtsH1/3 protease complex in the acclimation of a model cyanobacterium to nutrient stress. Plant Cell https://doi.org/10.1105/tpc.19.00411
By Vendula Krynická1,2 and Philip J. Jackson3,4
1Centre Algatech, Institute of Microbiology of the Czech…
Perspective: Revolutionizing agriculture with synthetic biology (Nature Plants)
Plant Science Research WeeklyIn a new Perspective by Wurtzel et al., the authors lay out SynBio’s tremendous potential to transform agriculture. Consider how we might leverage the “vast design space that plants have not occupied.” As an example, plants employ two pathways to fix carbon, and prokaryotes another six, but scientists…
Review: The role of peptides cleaved from protein precursors in eliciting plant stress reactions (New Phytol)
Plant Science Research WeeklyAlthough the first signaling peptide identified in plants, systemin, is involved in stress responses, developmentally important peptide signals have largely occupied the limelight. This Tansley Review by Chen et al. summarizes recent insights into peptides with a role in stress responses: wounding, pathogen…
Next-Gen sequence databases: RNA and genomic informatics resources for plants (Plant Physiol)
Plant Science Research WeeklyDrawing on more than 15 years of improvements, Nakano et al. have released public websites and resources for data access, display, and analysis of plant small RNAs, from Arabidopsis to wheat and with many crops and model species represented. The tools can analyze, integrate and display the abundance…
RNA G-quadruplex structures exist and function in vivo (bioRxiv)
Plant Science Research WeeklyRNA G quadruplex (RG4) structures that include two or more layers of G-quartets can form in guanine-rich RNA sequences. These structures are known exist in vitro and are proposed to form in vivo as well. However, there is no direct evidence from plants showing the presence of these structures in vivo. …
Penium margaritaceum genome bears footprints of evolutionary origins of land plants (bioRxiv)
Plant Science Research WeeklyThe Zygnematophyceae are the green algae that are most closely related to land plants. Some species in this clade are considered subaerial, meaning that they can live under air (as opposed to under water). The green films you see on tree trunks and walls are often Zygnematophycaea. Several new insights…
Genomes of subaerial Zygnematophyceae provide insights into land plant evolution ($) (Cell)
Plant Science Research WeeklyThe availability of charophyte algae genomic information is helping to understand how the plant transition to a terrestrial environment occurred at the molecular level. Here, Cheng et al. are releasing two genomes from the Zygnematophyceae clade (Spirogloea muscicola and Mesotaenium endlicherianum),…
A ligand-independent origin of abscisic acid perception ($) (PNAS)
Plant Science Research WeeklyThe origins of ABA signaling have long been puzzling. Green algae make ABA but don't respond to it, and ABA receptors have appeared to be missing from their genomes. Reccently, Sun et al. identified a gene encoding an ortholog of PYL family of ABA receptor proteins in the transcriptome of an alga from…
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridization (Nature Comms)
Plant Science Research WeeklyThe Ug99 strain of wheat stem rust pathogen Puccinia graminis f. sp. tritici (Pgt) emerged in Uganda in 1999 and presents a significant threat to global wheat production. Genetic analysis indicates it is distinct from other Pgt races. Li et al. set out to understand its origins. Puccinia graminis are…
Pollination of Cretaceous flowers (PNAS)
Plant Science Research WeeklyLike something from Jurassic Park, a tiny insect embedded in amber has provided new insights into life millions of years ago. But in this case, the 99 million year old insect shows us that, as Darwin surmised, insects really were important contributors to angiosperm pollination from their origins. In…
Review: Ready-to-eat salad crops: A plant pathogen’s heaven (Plant Disease)
Plant Science Research WeeklyFor those of you celebrating Thanksgiving next weekend, here’s an article full of fun facts to share over the salad. Gullino et al. describe the history of salad (mentioned by Virgil and Pliny) and the rapid growth in the prepared salad industry. They describe the challenge of growing and getting these…
Plant Science Research Weekly: November 22
Blog, WWR Full PostReview: The role of peptides cleaved from protein precursors in eliciting plant stress reactions
Although the first signaling peptide identified in plants, systemin, is involved in stress responses, developmentally important peptide signals have largely occupied the limelight. This Tansley Review…
Recognizing Plant Cell authors: Jeonghwa Oh
The Plant Cell, The Plant Cell: Author ProfilesJeonghwa Oh, first author of PHYTOCHROME INTERACTING FACTOR 8 inhibits phytochrome A-mediated far-red light responses in Arabidopsis
Current Position: Ph.D. candidate, Plant Biology Lab, Department of Biological Sciences, Korea Advanced Institute of Science and Technology
Education: B.S., Department…
Recognizing Plant Physiology authors: Sanjay Kumar Singh
Plant Physiology, Plant Physiology: Author ProfilesSanjay Kumar Singh, co-first author of Mutually Regulated AP2/ERF Gene Clusters Modulate Biosynthesis of Specialized Metabolites in Plants
Current Position: Scientist at the University of Kentucky, USA
Education: PhD in plant science, Bose Institute, India
Non-scientific Interests: poetry, gardening,…
Recognizing Plant Physiology authors: Priyanka Paul
Plant Physiology, Plant Physiology: Author ProfilesPriyanka Paul, co-first author of Mutually Regulated AP2/ERF Gene Clusters Modulate Biosynthesis of Specialized Metabolites in Plants
Current Position: Postdoctoral Scholar in Professor Sharyn Perry’s lab at the University of Kentucky, USA
Education: PhD in Integrated Plant and Soil Sciences, from…
Recognizing Plant Cell authors: Inmaculada Couso
The Plant Cell, The Plant Cell: Author ProfilesInmaculada Couso, first author of Phosphorus availability regulates TORC1 signaling via LST8 in Chlamydomonas
Current Position: Marie S. Curie Postdoctoral Fellow at the Plant Biochemistry and Photosynthesis Institute in Sevilla, Spain
Education: PhD. Department of Chemistry, Biochemistry Div. University…
Recognizing Plant Physiology authors: Cong Wang
Plant Physiology, Plant Physiology: Author ProfilesCong Wang, co-first author of Conservation and divergence in the meiocyte sRNAomes of Arabidopsis, soybean and cucumber
Current Position: Post-doctoral fellow. Plant Biology, Fudan University, China
Education: Ph.D. Biochemistry and Molecule Biology, Sep. 2013-Jan. 2019. Fudan University, China;…
Recognizing Plant Physiology authors: Jiyue Huang
Plant Physiology, Plant Physiology: Author ProfilesJiyue Huang, co-first author of Conservation and divergence in the meiocyte sRNAomes of Arabidopsis, soybean and cucumber
Current Position: Postdoctoral Research Associate at Copenhaver Lab, University of North Carolina-Chapel Hill, NC
Education: PhD in Biochemistry and Molecular Biology, Department…
OsKNAT7 bridges secondary cell wall formation and cell growth regulation
Plant Physiology, Plant Physiology: News and Views, ResearchThe plant cell wall is a complex structure composed of cellulose embedded in a matrix of polysaccharides (hemicellulose and pectin), phenolic compounds and proteins. The primary cell wall is a thin layer formed in growing cells and is present ubiquitously, whereas the secondary cell wall is a rigid and…
Arabidopsis OR Represses the Greening of Cotyledons while It Is in the Nucleus
Research, The Plant Cell, The Plant Cell: In a NutshellSun et al. showed that OR interacts with TCP14 in the nucleus of dark-germinated seedlings and reduces chlorophyll biosynthesis, thylakoid membrane development and expression of EARLY LIGHT-INDUCIBLE PROTEINS, and that subsequent illumination relieves this repression. Plant Cell https://doi.org/10.1105/tpc.…
Recognizing Plant Physiology authors: Chih-Hang Wu
Plant Physiology, Plant Physiology: Author ProfilesChih-Hang Wu, co-first author of NRC4 gene cluster is not essential for bacterial flagellin-triggered immunity
Current Position: Postdoctoral Scientist, The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, UK; Assistant Research Fellow, Institute of Plant and Microbial Biology,…
Recognizing Plant Physiology authors: Hiroaki Adachi
Plant Physiology, Plant Physiology: Author ProfilesHiroaki Adachi, co-first author of NRC4 gene cluster is not essential for bacterial flagellin-triggered immunity
Current Position: Postdoctoral Scientist, The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, UK
Education: BSc, MSc and PhD, Graduate School of Agricultural Science,…
Recognizing Plant Physiology authors: Juan Carlos De la Concepcion
Plant Physiology, Plant Physiology: Author ProfilesJuan Carlos De la Concepcion, co-first author of NRC4 gene cluster is not essential for bacterial flagellin-triggered immunity
Current Position: Post-doc, Department of Biological Chemistry, John Innes Centre, Norwich, UK
Education: BSc in Biology, BSc Biochemistry and MSc in Molecular Genetics and…
New Teaching Tool, "Computational Microscopy: Revealing Molecular Mechanisms in Plants Using Molecular Dynamics Simulations"
Blog, Pubs Pages, The Plant Cell, The Plant Cell: NewsWe’re excited to annouce the publication of The Plant Cell‘s latest Teaching Tool, “Computational Microscopy: Revealing Molecular Mechanisms in Plants Using Molecular Dynamics Simulations,” by Jiangyan Feng, Jiming Chen, Balaji Selvam, and Diwakar Shukla. Available without subscription at The…
Essay: Reconstructing trait evolution in plant evo–devo studies (Curr. Biol.)
Plant Science Research WeeklyPlant evo-devo studies are thriving thanks to new genetic engineering tools and the emergence of model systems such as the moss Physcomitrella patens, the liverwort Marchantia polymorpha, and the fern Ceratopteris richardii. In the past few years many debates have taken place among the community, in…
Review: Genetic strategies for improving crop yields (Nature)
Plant Science Research WeeklySimply put, as food demand increases due to population growth and increased affluence, crop yields are likely to decrease due to the changing climate. Plant scientists will be familiar with many research avenues that aim to address this disconnect, ranging from increasing crop resilience to abiotic stresses,…
Review: Soil compaction and the architectural plasticity of root systems (J Exp Bot)
Plant Science Research WeeklyRoot system architecture (RSA) describes the spatial arrangement of root components within the soil. RSA is useful to understand the exploration of the plant to get nutrients and water through the soil space. In a new review, Correa et al. discuss RSA plasticity in response to soil compaction, which…
Review: An evolutionary history of genes controlling carpel development (COPB)
Plant Science Research WeeklyCarpels, the female reproductive structures in angiosperms, are the most complex organs in plants. Most of the current knowledge about the molecular mechanism underlying carpel development derives from Arabidopsis. In a new review, Becker summarizes recent studies about the reconstruction of ancestral…
New insights into Marchantia polymorpha genome
Plant Science Research WeeklySince the publication of the Marchantia polymorpha genome in 2017, a big update was necessary. In the past week, two groups published on improving Marchantia chromosome assembly following different experimental approaches. Diop et al. made a high-density linkage map using genetic markers obtained by…
ATP binding cassette proteins ABCG37 and ABCG33 are required for potassium-independent cesium uptake in Arabidopsis roots (bioRxiv)
Plant Science Research WeeklyPotassium is one of the major nutrients for plant growth and development. Plants have a well-studied potassium uptake system mediated by transporters and ion channels. Unfortunately, due to the chemical similarity of potassium and cesium, which is toxic for plant growth, cesium is able to to get into…
A conserved signaling module controls tip growth in liverwort and Arabidopsis (Curr. Biol).
Plant Science Research WeeklyPlants have evolved with rooting cells to anchor them to the land and uptake nutrients efficiently. Growth of root hairs in seed plants or rhizoids in early diverging plants both rely on tip growth, which requires a coordination of wall loosening and deposition of wall materials with cell expansion in…
Understanding pathogenic bacterial gene expression in planta is essential to understand plant pathology (bioRxiv)
Plant Science Research WeeklyHow exactly does the plant defense system target pathogens? Nobori et al. have analyzed interactions inside the plant between the foliar bacterial pathogen Pseudomonas syringae and Arabidopsis thaliana at transcriptomic and proteomic levels by using RNAseq and liquid chromatography mass spectrometry…
Overexpression of zmm28 increases maize grain yield in the field (PNAS)
Plant Science Research WeeklyThis study, from scientists at Corteva Agriscience, demonstrates a yield boost in transgenic maize overexpressing a gene encoding a transcription factor. Expression of zmm28, a maize MADS-box transcription factor gene, is elevated through fusion to a maize GOS2 promoter, which provides moderate, constitutive…
A large transposon insertion in the stiff1 promoter increases stalk strength in maize (Plant Cell)
Plant Science Research WeeklyWe all know the importance of staying upright, especially for our grass crops. Here, Zhang et al. identified a gene underlying a large-effect quantitative trait locus that confers stiff stalks, so prevents lodging. They show that the stiff-stock allele carries a large transposon that strongly represses…
Oxylipins other than jasmonic acid regulate systemic resistance (Plant Cell)
Plant Science Research WeeklyPlant roots communicate with microbes in a sophisticated manner through chemical communication within the rhizosphere, thereby leading to biofilm formation of beneficial microbes and resulting in priming of defence, or induced resistance in the plant host to a wide range of pathogens (induced systemic…
Plant Science Research Weekly: November 15
Blog, WWR Full PostReview: Genetic strategies for improving crop yields
Simply put, as food demand increases due to population growth and increased affluence, crop yields are likely to decrease due to the changing climate. Plant scientists will be familiar with many research avenues that aim to address this disconnect,…
You Are What You Eat: An ATG1-Independent Path to Autophagy
Research, The Plant Cell, The Plant Cell: In BriefFixed carbon derived from photosynthates serves critical roles as both a chemical energy reservoir and a building block for anabolic processes. Environmental constraints that place limitations on a plant’s fixed-carbon economy, such as prolonged darkness and photosynthetic stress, can therefore be…
The first structure of plant actin filaments
Research, The Plant Cell, The Plant Cell: In a NutshellRen et al. examine the structure of maize pollen actin.
Plant Cell https://doi.org/10.1105/tpc.18.00973
Zhanhong Ren (Ph.D. candidate), Key Laboratory of Cell Proliferation and Regulation Biology of Ministry of Education, Center for Biological Science and Technology, College of Life Sciences, Beijing…
Recognizing Plant Direct authors: Jane Fudyma
Plant Direct, Plant Direct: Author ProfilesJane Fudyma, first author of Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites
Current Position: Research Specialist & Laboratory Manager, University of Arizona, Tucson, AZ
Education: BS (Hons) General Science, Biology/Chemistry Concentrations, 2013
Non-Scientific…
Recognizing Plant Cell authors: Mengna Zhuo
The Plant Cell, The Plant Cell: Author ProfilesMengna Zhuo, first author of A Jasmonate-activated MYC2-Dof2.1-MYC2 Transcriptional Loop Promotes Leaf Senescence in Arabidopsis
Current Position: PhD student, Biotechnology Research Center, The University of Tokyo, Japan
Education: M.Sc. in Agriculture, The University of Tokyo, Japan; B.Sc. in Veterinary…
Recognizing Plant Physiology authors: Mayumi Nakano
Plant Physiology, Plant Physiology: Author ProfilesMayumi Nakano, first author of Next-Generation Sequence Databases: RNA and Genomic Informatics Resources for Plants
Current Position: Scientific Manager, Meyers Lab, Donald Danforth Plant Science Center
Education: M.A. in Japanese Literature from University of Wisconsin-Madison, M.A. in Comparative…
Phytochrome-Interacting Factors and Tomato Qualities
Plant Physiology, Plant Physiology: On The InsidePhytochromes (PHYs) are red/far-red light photoreceptors that are activated by light and deactivated by dark and high temperature. Upon light exposure, PHYs are translocated into the nucleus, where they interact with PHY-INTERACTING FACTORS (PIFs) and induce the degradation of these transcription factors.…
Insights into Esca Grape Vine Disease
Plant Physiology, Plant Physiology: On The InsideEsca is a fungal vascular disease of grapevine (Vitis vinifera) that negatively impacts grape yield and the wine industry. Esca is characterized by three main symptoms: leaf scorch, trunk necrosis, and a colored stripe along the vasculature. The fungi most strongly associated with esca wood necrosis…
Circadian Clock Gene Affects Aphid Feeding
Plant Physiology, Plant Physiology: On The InsidePhloem sap-feeding aphids inflict plant damage by direct feeding and by acting as a vector for plant disease transmission. Their highly specialized stylets reach the phloem sieve elements, allowing aphids to extract plant photoassimilates without consuming structural tissues. Probing and feeding by aphids…
Improving Grain Filling Rate in Rice
Plant Physiology, Plant Physiology: On The InsidePoor grain filling by hybrid japonica rice (Oryza sativa) is a major agricultural problem. It has previously been reported that the rice accession Ludao, a wild-type japonica rice grown naturally in the Liangyungang region of China, exhibited a high grain-filling rate and could be selected as a parent…
CO2 and O2 as Drivers of Plant Macroevolution
Plant Physiology, Plant Physiology: On The InsideThe evolution of photosynthesis and, at a later point, the emergence of land plants resulted in substantial changes in the composition of Earth’s atmosphere. Plant colonization of the land in the early Paleozoic (more than 450 million years ago [mya]) was followed by a rapid drop in atmospheric [CO2],…
A Gene Affecting Chloroplast Size
Plant Physiology, Plant Physiology: On The InsideDuring leaf growth and development, chloroplast numbers increase to maximize photosynthetic capacity. In mesophyll cells, chloroplast division takes place primarily during cell expansion and increases plastid numbers from; 10 to 20 in leaf primordia to; 100 or more in mature mesophyll cells. Chloroplasts…
Acylsugar Metabolic Gene Network
Research, The Plant Cell, The Plant Cell: In a NutshellBy Sabyasachi Mandal
Department of Biology, Texas A&M University, College Station, USA
Background: Acylsugars are specialized metabolites secreted through the trichomes (plant hairs) of many plants in the nightshade family (Solanaceae). These compounds provide protection against herbivores…
Purple is the New Orange: Anthocyanin Regulation Coming Together in Carrot
Plant Physiology, Plant Physiology: News and Views, ResearchWestern cultivated carrot (Daucus carota subsp. sativus L) is broadly known for its orange pigmentation and accumulation of carotenoids, known as the carotene group (var. sativus). However, the eastern wild carrot (subsp. carota) originating from southwestern Asia over a century ago provides purple pigmentation…
Transcriptome Dynamics and Gene Activities during Embryo and Grain Development in Wheat
Research, The Plant Cell, The Plant Cell: In a NutshellXiang et al. elucidate transcriptome dynamics and gene activities during embryogenesis and grain development in modern wheat and its progenitors. Plant Cell https://doi.org/10.1105/tpc.19.00397.
By Daoquan Xiang, Teagen D. Quilichini, Peng Gao, and Raju Datla
Aquatic and Crop Resource Development,…
Recognizing Plant Physiology authors: Minoru Ueda
Plant Physiology, Plant Physiology: Author ProfilesMinoru Ueda, first author of Histone modifications form epigenetic regulatory networks to regulate abiotic stress response
Current Position: Researcher
Education: B.A. in Genetic Engineering, faculty of Agriculture, Hokkaido University, and Ph.D. in Plant Molecular Genetics, Graduate School of Agricultural…
Recognizing Plant Cell authors: Ken-Der Wang
The Plant Cell, The Plant Cell: Author ProfilesKen-Der Wang, first author of OXYLIPINS OTHER THAN JASMONIC ACID ARE XYLEM-RESIDENT SIGNALS REGULATING SYSTEMIC RESISTANCE INDUCED BY TRICHODERMA VIRENS IN MAIZE
Current Position: Postdoctoral Research Associate in Dr. Charles Kenerley’s lab, at Texas A&M University
Education: PhD in Plant…
Recognizing Plant Physiology authors: Maria A. Fernandez
Plant Physiology, Plant Physiology: Author ProfilesMaria A. Fernandez, first author of RBR-type E3 ligases and the Ub-conjugating enzyme UBC26 regulate ABA receptor levels and signaling
Current Position: PhD candidate (FPU fellowship) in Dr. Pedro Rodriguez´s lab, at the Instituto de Biología Molecular y Celular de Plantas (IBMCP-CISC)
Education:…
Review: Exchange of small regulatory RNAs between plants and their pests (Plant Physiol)
Plant Science Research WeeklyTrans-species small RNAs are the latest class in the family of signals that move between plants and their attackers. Hudzik et al. review this topic, covering small RNAs that move from plant to pest and from pest to plant. The transmitted RNAs function by interfering with gene expression in the recipient.…
Review: Mosses in biotechnology (Curr. Opin. Biotechnol.)
Plant Science Research WeeklyPlant biotechnology often refers to crops and, more recently, algae, but biotechnology also applies to mosses. As Decker and Reski summarize, mosses have some of the same desirable features as algae, including a largely haploid lifecycle that facilitates genetic studies (including homologous recombination…
Machine learning enables high-throughput phenotyping for analyses of the genetic architecture of bulliform cell patterning in maize (G3)
Plant Science Research WeeklyBulliform cells lie in rows along the upper (adaxial) surface of the maize leaf, and through changes in volume contribute to leaf-rolling, which is a response to water deficit. Several mutants have been identified that affect bulliform cell formation and function, but as yet their occurance in natural…
Synthetic biogenesis of chromoplasts from leaf chloroplasts (bioRxiv)
Plant Science Research WeeklyChromoplasts are a type of plastid, usually found in fruits and flowers, that can accumulate large amounts of carotenoids including beta-carotene (pro-vitamin A). It has been proposed that increasing chromoplast formation could be a way to enhance human consumption of vitamin A. In a new report, Llorente…
Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta (Adv. Sci)
Plant Science Research WeeklyMulticellularity has arisen independently many times across the eukaryotic tree of life (e.g., in plants, animals and fungi). Comparisons of green algae with land plants is likely to identify the genetic toolkit of multicellularity as well as the colonization of terrestrial habitats. Here, Liang et al.…
A MYC-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels ($) (PNAS)
Plant Science Research WeeklyPlants perceive and respond to touch and other physical contact including wounding. Van Moerkercke et al. explored the network of rapid gene responses to a gentle water spray, simulating rainfall. Many of these mecho-induced genes are also responsive to jasmonate, the hormone involved in response to…