Entries by Mary Williams

A plant-specific kinesin KinG regulates intra- and intercellular movement of SHORT-ROOT

SHORT-ROOT (SRT) is a transcription factor that has previously been shown to move between cells and so contribute to developmental patterning. Spiegelman et al. investigated the cellular machinery that contributes to SRT’s movement. Previous work showed that the movement of SRT depends on the endosome and intact microtubules. In this work the authors identified KinG, […]

SHORTROOT-mediated increase in stomatal density has no impact on photosynthetic efficiency

SHORTROOT (SRT) is a transcription factor that contributes to developmental patterning non-cell autonomously, by moving between cells. In leaves, SRT has been shown to contribute to sub-epidermal patterning specified by distance from the vein. Schuler et al. explored whether it also contributes to epidermal patterning, specifically stomatal patterning, in rice leaves. They found that after […]

Barriers to integration of bioinformatics into undergraduate life sciences education

Today’s biology students need to be trained to work with large datasets, meaning that mathematics, statistics and computer science should regularly be integrated into their biology courses. Williams et al. carried out a survey to determine the extent to which this occurs. Although 95% of respondents agree that bioinformatics training is important, 60% do not […]

What We’re Reading: November 17th

J. Exp. Bot. Special Issue. The plant cuticle: old challenges, new perspectives ($) The cuticle is a cell-wall polymer that protects against desiccation, pathogens and UV light.  Domínguez et al. provide an open-access editorial that describes this fine collection of articles covering all aspects of the plant cuticle, from its evolutionary origins to its ecological […]

Light controls protein localization through phytochrome-mediated alternative promoter selection ($)

Previous studies have shown that some genes use multiple promoters, but the extent to which this occurs has not been fully resolved. Ushijima et al. showed widespread phytochrome-mediated differential promoter use in response to light. They identified more than 2000 genes with light-dependent alternative promoter selection, most affecting the length of the N-terminus of the […]

Review: Growth-mediated plant movements: hidden in plain sight ($)

Time-lapse imaging reveals the slow movements of plants, such as phototropism and gravitropism. Harmer and Brooks review the molecular bases for these growth-mediated movements. While auxin has long been known to be involved in photo- and gravitropisms, new results show that ABA is involved in the movement of plants towards water (hydrotropism). The authors also […]

Recombination between members of Onsen family

Plant genomes are largely remnants of transposons of varying ages, some of which are presumed to be no longer capable of transposition. Sanchez et al. examined the family of Onsen retrotransposons to determine which members retain activity. They prompted transposition through heat treatment in a mutant line deficient in siRNA production (siRNAs suppress transposon activation). […]

Complex evolutionary history and targets of domestication in the cultivated potato

Potatoes originated in the Andes of southern Peru, and are now the third most important crop for direct human consumption. Hardigan et al. sequenced 67 potato relatives, including South American landraces, North American cultivars and wild-diploid species to learn about the genetics of modern potato’s domestication. They identified genes associated with key domestication events including […]

Canalization of tomato fruit metabolism

Plants are noted for their phenotypic plasticity, but there are also examples of phenotypic canalization, which Alseekh et al. define as “the property of those phenotypic traits showing no environmental effect when individuals of a specific genotype are exposed to a set of different environments.” In this work, they explored the genetic underpinnings of canalization […]