Tag: Gene Regulation

It becomes more and more clear that regulation of complex traits and processes, such as root growth and lateral root growth, involves not only gene expression quality (which genes are expressed), quantity (how much transcript is present) and space (in which cell-type transcripts are accumulating) but…

Perception of the phytohormone ethylene results in the cleavage of EIN2 and translocation to the nucleus of its C-terminal end, EIN2-C. Zhang et al. showed that EIN2-C is essential for chromatin modification that allows EIN3, the main ethylene signaling transcription factor, to transcriptionally regulate…

Jasmonic acid (JA) and its derivatives including methyl jasmonate (MeJA) mediate diverse responses to wounding and herbivory and also help to control the growth-defense trade off. JA’s core signaling components have mainly been identified through genetics approaches in Arabidopsis, but gaps remain…

There’s only one thing worse than having a parasite suck the life juices out of you, and that’s having a parasite suck the life juices out of you while simultaneously injecting you with miRNAs to increase your vulnerability. Shahid et al. looked at microRNAs isolated from dodder (Cuscuta campestris),…

Light is one of the environmental conditions which regulates plants’ development, but knowledge of how light-induced transcript accumulation occurs via transcriptional versus post-transcriptional mechanisms is limited. Xin et al. report Splicing Factor for Phytochrome Signaling (SFPS) as an interacting…

Chloroplast biogenesis and leaf development are closely linked processes that have been difficult to tease apart, until recently. Dubreuil et al. used a pluripotent inducible cell line from Arabidopsis, basically plant stem cells, which develop chloroplasts on demand when exposed to light. Using this…

The histone H3 variant H3.3 is distinguished by its expression throughout the cell cycle, while H3.1 is expressed predominantly during DNA replication. Genome-wide ChIP studies in plants have shown that H3.3 is associated with actively transcribed genes, and enriched near the transcriptional end sites.…

The ever-increasing amount of data available to researchers has come with similarly increasing cognitive loads in efforts to use these data. Even when data sets are stored in well-curated databases, it can be time-consuming to master the specific tools harbored at each site and cumbersome to move between…