Tag: Gene Regulation

The red color of petunia petals is due to the presence of anthocyanin pigments, produced in part through the action of the chalcone synthase enzyme.  In the “Red Star”’ variety, expression of the CHS-A gene encoding chalcone synthase is silenced in cells around the midvein through post-transcriptional…

Absorption of red and far-red light by phytochromes dramatically affects plant development, and many of these effects are mediated by the PIF (PHYTOCHROME INTERACTING FACTOR) family of transcription factors. Favero reviews the many ways that PIF activity is regulated beyond through their interactions…

Plants take cues from the environment and decide when and how to regulate growth. When light is limiting, etiolated growth allows plants to reach the soil surface and gain access to light. After light perception, plants de-etiolate and go through a series of morphological and genetic changes. HY5 is…

The ability to directly sequence RNAs (RNA-seq) has revolutionized our understanding of gene expression, but it can miss or underestimate short-lived RNAs. Several methods have been developed to identify newly-synthesized mRNAs to provide a snapshot of transcription as it happens. Szabo present Neu-seq,…

The symbiotic relationship between Rhizobium bacteria and leguminous plants like Medicago results in the development of secondary root organs called nodules. The bacteria housed in the nodule infection zone assimilate atmospheric nitrogen for plant growth. In this paper, Traubenik et al. used (RNA-seq)…

Plants activate autophagy, a cellular recycling process, to recycle useful nutrients or remove harmful items, helping them to withstand harsh conditions. Recently, Yang et al. found that HY5 is a hub connecting the light signaling and autophagy pathways. Under replete conditions (e.g., light and nitrogen-sufficient),…

For many years, the Arabidopsis transgenic allele ice1-1 was used to demonstrate the role of the transcription factor ICE1 in freezing and cold tolerance. This gene was first identified in a screening strategy using a luciferase reporter for DREB1A expression, another TF involved in downstream signaling.…

Lycophytes, including the model species Selaginella moellendorffii, are extant (still alive today) seedless vascular plants that were particularly abundant around 400-300 million years ago (and major contributors to the formation of coal). To further understand the biology of some of these oldest extant…