Tag: Computational Biology

Auxins are a class of phytohormones that regulate many aspects of plant development. Morales-Tapia and Cruz-Ramírez review the current status of the available auxin-driven computational models and discuss plausible integration of these into a single model for plant development. Computational modeling…

Ash dieback (a fungal disease) and the beetle Agrilus planipennis (a herbivore) are crushing ash tree populations in the Northern Hemisphere. To shed light on the genetic basis of the trees' susceptibility and to understand the genetic diversity of these trees, Sollars et al. have sequenced one individual…

We’ve highlighted some of the Plant Cell papers that were widely shared, liked, blogged, retweeted and otherwise garnered high-levels of attention this year. Perhaps you can use some holiday-season quiet time to catch up on those you missed. Reviews and Perspectives Creating order from chaos: epigenome…

We’ve highlighted some of the Plant Physiology papers that were widely shared, liked, blogged, retweeted and otherwise garnered high-levels of attention this year. Perhaps you can use some of that holiday-season quiet time to catch up on those you missed. The breakaway attention-getter from Plant…

Slides from the recent CRISPR/Cas workshop held at the GARNet2016 meeting are now available to download. Organized by Vladimir Nekrasov and Amanda Hopes (The Sainsbury Laboratory/University of East Anglia, UK), the workshop title was, "Introduction to CRISPR-Cas, troubleshooting target design…

Nitrogen-fixing cyanobacteria such as Anabaena sp. PCC 7120 have the challenge of supporting nitrogenase, an enzyme that is highly sensitive to oxygen, and simultaneously photosynthesis, an oxygen-producing set of reactions. They accomplish this by segregating these reactions into two cells, heterocysts…

The yield of a maize plant is correlated with the size, shape and number of kernels it produces. Miller et al. have developed an automated system to quantify these crucial attributes from photographs of kernels both on and off the cob. Their methods will enable researchers and breeders to record…

IN BRIEF by Kathleen L. Farquharson kfarquharson@aspb.org Alternative splicing (AS) regulates gene expression and greatly expands the coding capacity of complex genomes. By regulating which elements of an mRNA transcript are removed or retained, AS produces multiple transcripts from a single gene. Some…