Xiaomin Liu: Plant Physiology First Author

Xiaomin Liu, co-first author of “Fruit crops combating drought: physiological responses and regulatory pathways”

Current Position: PhD, College of Horticulture, Northwest A&F University, China

Education: 2012.09–2016.06 Shanxi Normal University (B.Sc.); 2016.09–2019.06 Northwest A&F University (M.Sc.; PhD)

Non-scientific interests: Playing Badminton

Brief bio: I graduated from College of Life Science, Shanxi Normal University in 2018. The undergraduate study gave me a preliminary understanding of horticulture. In the same year, I was honored to join the Stress Biology of Fruit Trees NWAFU led by Professor Fengwang Ma and my PhD advisor is Professor Chao Li. Currently I am working on the efficient use of water and nutrients in apple. In the past five years, I have published 4 SCI papers as the first author.

共同第一作者:刘晓敏

目前职位:西北农林科技大学园艺学院,在读博士

教育经历:2014.09–2018.06,山西师范大学,学士;2018.09至今,西北农林科技大学,硕士,博士在读

兴趣爱好:打羽毛球

个人简历:本人于2018年毕业于山西师范大学,本科期间的学习使我对园艺专业有了初步的认知。同年有幸加入西北农林科技大学园艺学院苹果逆境生物学团队,团队负责人是马锋旺教授,导师是李超教授。目前研究方向是苹果自身水分和养分高效利用。近五年来,以第一作者身份发表SCI论文4篇。

 

Xiaochang Yin: The Plant Cell First Author

Xiaochang Yin, co-first author of “Binding by the Polycomb complex component BMI1 and H2A monoubiquitination shape local and long-range interactions in the Arabidopsis genome”

Current Position: Postdoc, School of Advanced Agricultural Sciences, Peking University, China

Education: Ph.D., Hainan University, China

Non-scientific Interests: travelling

Brief bio: During my Ph.D. study, I worked in Professor Xingyu Jiang’s lab, mainly to dissect the molecular mechanisms underlying plant salt tolerance. In the postdoc stage, I joined Dr. Yue Zhou’s lab in Peking University in 2020. I studied plant epigenetics, with a main focus on the molecular mechanism of Polycomb Group (PcG) proteins regulating chromatin structure in Arabidopsis. In this work, we show that Arabidopsis genome is partitioned into contiguous compartment domains (CDs) with different epigenetic features. The histone-modifying Polycomb group machinery has been involved in 3D chromatin organization, which is required to maintain appropriate intra-CD and long-range interactions.

姓名:尹晓畅­­­­­

目前职位:北京大学现代农学院博士后

教育经历:海南大学博士

兴趣爱好:旅游

个人简介:博士期间我加入江行玉教授课题组,从事植物响应逆境胁迫的功能研究。2020年我有幸加入北京大学周岳研究员课题组开展博士后研究工作,从事植物表观遗传学研究,尤其关注Polycomb Group (PcG) 蛋白调控的抑制机制在植物发育中的作用。本研究中我们发现拟南芥基因组可以划分为带有不同表观修饰的区室结构域(CD),PcG蛋白参与拟南芥基因组局部和远程相互作用的调控。

 

Francisco J. Romero-Campero: The Plant Cell First Author

Francisco J. Romero-Campero, co-first author of “Binding by the Polycomb complex component BMI1 and H2A monoubiquitination shape local and long-range interactions in the Arabidopsis genome”

Current Position: Principal Investigator in the Institute for Plant Biochemistry and Photosynthesis (University of Seville – CSIC)

Education: Ph.D., Computer Science and Artificial Intelligence Department, University of Seville (Spain)

Non-scientific Interests: Reading and swimming. Walking in the woods, beach puddles and estuaries. Playing with my kids.

Brief bio: I have always been fascinated by plants and algae since my childhood. My grandfather was a farmer, and I remember walking through the wheat fields with him, removing the grains from the spikes to check if they were ready for harvest. As a child, I would walk with my cousins and sister through the estuaries in the Bay of Cádiz (Southern West Spain). While my cousins would be chasing crabs and birds, my sister and I would be picking up algae from puddles, fascinated by their different colors, smells, and tastes.

I studied Mathematics and Computer Science at the University of Seville (Spain). However, I went back to my interest in biology when I pursued a PhD in Bioinformatics and Systems Biology from the University of Seville (Spain) and the University of Sheffield (United Kingdom). My first postdoc focused on Synthetic Biology at the University of Nottingham (United Kingdom). Later, I returned to Spain to use omics techniques to study plant development at the Institute for Plant Biochemistry and Photosynthesis (University of Seville – CSIC).

Currently, I am one of the Principal Investigators in the Research Group on Microalgae Systems Biology and Biotechnology. Our group studies the evolution of gene expression patterns and gene regulatory mechanisms exerted by transcription factors and epigenetic marks in the green lineage, from microalgae to land plants, among other topics.

 

姓名:Francisco J. Romero-Campero

目前职位:植物生物化学与光合作用研究所(University of Seville – CSIC)研究员

教育经历:塞维利亚大学计算机科学与人工智能系博士

兴趣爱好:阅读,游泳,散步,和孩子们玩耍

个人简介:我从小就对植物和藻类很着迷。我的祖父是一个农民,我记得我曾和他一起穿过麦田,从麦穗上摘下麦粒,检查它们是否可以收获。小时候,我会和堂兄弟姐妹一起走过Cádiz湾(西班牙西南部)的河口。当我的堂兄弟姐妹们追逐螃蟹和小鸟时,我和妹妹会从水坑里捡水藻,它们不同的颜色、气味和味道吸引了我。

我在塞维利亚大学(西班牙)学习数学和计算机科学。当我在塞维利亚大学(西班牙)和谢菲尔德大学(英国)攻读生物信息学和系统生物学博士学位时,我又重燃了对生物学的兴趣。我曾在英国诺丁汉大学做过合成生物学方向的博士后研究。后来,我回到西班牙,在塞维利亚大学植物生物化学与光合作用研究所(University of Seville – CSIC)借助组学技术研究植物发育。

目前,我是微藻系统生物学和生物技术研究组的研究员之一。我们组主要关注从微藻到陆生植物中,由转录因子和表观修饰介导的基因表达模式和基因调控机制的进化历程。

Minqi Yang: The Plant Cell First Author

Minqi Yang, co-first author of “Binding by the Polycomb complex component BMI1 and H2A monoubiquitination shape local and long-range interactions in the Arabidopsis genome”

Current Position: Ph.D. candidate, School of Advanced Agricultural Sciences, Peking University

Education: Bachelor of ­­­­Science, School of ­­­Life Sciences, Sun Yat-Sen University, Guangzhou, People’s Republic of China

Non-scientific Interests: photographing and hiking

 

Brief bio: How does the cell fold and compress the genetic material in the narrow nucleus, and how does it efficiently and orderly regulate the genetic material to complete various life activities? This is the question that fascinates me most in the field of plant epigenetic research. I was struck by the ingenuity of the chromatin conformation capture technology that was needed to study this problem. Using this technology to explore the life activities of cells, especially plant cells, will be the interest of my doctoral research. As biological research enters the era of omics, the requirement for data analysis is further raised. In 2021, I joined the group of Dr. Yue Zhou in Peking University and studied bioinformatics under the guidance of Dr. Yue Zhou and Dr. Hang He. In this study, we further determined the three-dimensional structural hierarchy of Arabidopsis thaliana and identified the regulatory role of PRC1 in it.

 

姓名:杨敏琪

目前职位:北京大学,博士研究生

教育经历:中山大学生命科学学院,理学学士

兴趣爱好:摄影,徒步

个人简介:细胞如何将遗传物质盘曲折叠压缩在狭小的细胞核中,又如何高效有序地调控遗传物质完成各类生命活动?这是植物表观研究领域最吸引我的问题。研究这个问题所需要借助的染色质构象捕捉技术,其设计思路的巧妙让我深受震撼。借助这项技术对细胞,尤其是植物细胞的生命活动做出探索,将是我博士研究阶段的兴趣所在。随着生物研究进入组学时代,对数据分析的要求也进一步提升。2021年我加入北京大学周岳研究员课题组,在周岳老师和何航老师的指导下学习生物信息学。在本研究中,我们进一步确定了拟南芥的三维结构层次,并确定了PRC1在其中的调控作用。

Hesham M.B. Sayed: Plant Physiology First Author

Hesham M.B. Sayed, first author of “Biosynthesis of polyprenylated xanthones in Hypericum perforatum roots involves 4-prenyltransferase”

Current Position: Assistant lecturer (Faculty of Pharmacy, Assiut University, Assiut, Egypt)

Education:   PhD from Technical University Braunschweig, Germany; MSc and BSc from Faculty of Pharmacy, Assiut University, Egypt.

Non-scientific Interests: analyzing football games, playing chess, reading

Brief bio:

As a pharmacist by education, I have been always fascinated by the machinery through which medicinal plants biosynthesize an impressive array of specialized metabolites with interesting therapeutic values. Upon completion of my bachelor’s degree of Pharmaceutical Sciences, I obtained my master’s degree from the Faculty of Pharmacy, Assiut University in Egypt.  The master’s research project focused on chemical profiling of pomegranate and the potential use of its extracts for the development of new anti-schistosomal drugs. Subsequently, supported by a DAAD scholarship, I pursued my PhD research at the Institute of Pharmaceutical Biology of the Technical University Braunschweig in the lab of Prof. Beerhues. I delved into the biosynthesis of plant active constituents, particularly prenylated acyphloroglucinols. These compounds, including the popular antidepressant hyperforin, are known for their beneficial therapeutic properties. My research primarily focused on investigating the enzymes responsible for attaching prenyl groups of different chain lengths to the acylphloroglucinol cores. These enzymes, known as prenyltransferases (PTs), play a crucial role in the biosynthesis of the active constituents of St. John’s wort (Hypericum perforatum). In the future, the identified enzymes can be used for the biotechnological production of such active compounds and their derivatives.

 

Sunil Kenchanmane Raju: Plant Physiology First Author

Sunil Kenchanmane Raju, first author of “DNA methylation signatures of duplicate gene evolution in angiosperms” 

Current Position:

Postdoc, Center for Genomics and Systems Biology, New York University

Education:  Ph.D. University of Nebraska – Lincoln

Non-scientific Interests: Playing badminton, table tennis, and cricket, and cooking traditional Indian cuisine

Brief bio: 

Sunil is currently a postdoc in Ken Birnbaum’s lab at the Center for Genomics and Systems Biology at New York University. His current research focuses on comparative single-cell genomics in maize and related grasses. Sunil finished his master’s at the Kuvempu University in India and obtained his Ph.D. at the University of Nebraska-Lincoln, where he showed the utility of induced epigenetic variation in plant breeding for yield and stability-related traits in soybean and Arabidopsis. After his Ph.D., Sunil joined the Niederhuth lab as a postdoc at Michigan State University, working towards understanding the influence of DNA methylation and other epigenomic factors on the expression and evolution of genes across plant species. In this paper, Sunil showed that distinct genic DNA methylation patterns are associated with different types of gene duplicates. Further, non-CG DNA methylation in duplicate paralogs is associated with more recent duplication, higher rates of sequence evolution, increased frequency of presence-absence variation, and much narrow gene expression breadth, suggesting its role in genome dosage balance following duplication. Sunil is also co-founder of the worldwide organization Plant Postdocs, a peer community for early-career plant scientists to share resources and support each other in their career development.

Xiaoyu Weng: Plant Physiology First Author

Xiaoyu Weng, first author of “Transcriptome and DNA methylome divergence of inflorescence development between two ecotypes in Panicum hallii

Current Position:

Research Associate, University of Texas at Austin, USA

Education:

Ph.D., Huazhong Agricultural University, China

Non-scientific Interests: photography, music, badminton

Brief bio:

My Ph.D. studies focused on the cloning of a pleiotropic gene Ghd7, which has major quantitative trait loci (QTL) effects on flowering time and yield potential in rice. This work has led to the understanding of the mechanisms of photoperiodic flowering and adaptation across different latitudes in rice, providing a reference for many later studies on rice and other crops (e.g., maize and sorghum), and improving current rice breeding practices.

Starting in 2014, I joined Dr. Thomas Juenger’s lab at the University of Texas at Austin to study adaptive evolution in native perennial grasses. Using the native species Panicum hallii (P. hallii) as a model, I investigated the genetic variation of flowering time and inflorescence architecture for a better understanding of local adaptation and life history trade-offs. In this study, our multi-omics results revealed the potential role of cytokinin signaling in the heterochronic changes and the evolutionary features of differentially methylated regions underlying the inflorescence divergence. This study laid the foundation for further understanding of the seed size-number trade-off, a key life history trade-off, in P. hallii.

姓名

翁小煜

目前职位

美国德克萨斯大学奥斯汀分校,副研究员

教育经历

华中农业大学博士学位

兴趣爱好

摄影,音乐,羽毛球

个人简介

我的本科和博士均毕业于华中农业大学。我的博士工作主要是水稻产量相关的一因多效QTL基因 Ghd7 的克隆和功能分校。该工作揭示了水稻光周期开花的分子机制和跨纬度种植的适应性机理,为水稻和其他农作物(如玉米和高粱等)的开花适应性研究提供了参考,并为当前水稻育种实践提供了理论依据。

2014年至今,我在德克萨斯大学奥斯汀分校 Thomas Juenger 教授的实验室分别担任博士后和副研究员。过去近十年里,我们将野生禾本科黍属多年生草Panicum hallii (P. hallii) 发展为一种新的模式植物,用以研究多年生草类适应性进化的遗传基础。我的研究主要包括P. hallii开花时间和花序结构的遗传变异,以及它们在本地适应(local adaptation)和生活史权衡(life-history trade-offs)过程中的作用和意义。在本研究中,我们通过多组学的策略,揭示了P. hallii不同生态型之间花序发育的异时性特征(heterochrony)和差异甲基化区域进化特点。 该研究为进一步理解P. hallii 种群进化过程中生活史权衡,特别是种子大小和数量权衡(seed size-number trade-offs)的分子机理奠定了基础。

Review: Climate change impacts on plant pathogens, food security, and paths forward

Much of what is written about the impacts of climate change on food production is focused on the abiotic stresses that plants will experience, but biotic stresses will be equally impactful, as discussed in this fine review by Singh et al. The challenges in predicting climate impacts on plant disease severity are complicated in part because the impacts on the abundance and virulence of the pathogen must be considered, as well the abundance and vigor (impacting defenses) of the plant host, global shifts in the distributions of plant and pathogen, and the impacts on the plant microbiome, which can promote or suppress disease. Furthermore, all these interactions are impacted by daytime temperatures, nighttime temperatures, water availability, elevated CO2 levels, and other abiotic factors. The authors outline several strategies to manage future disease outbreaks such as modified land management practices including the use of beneficial microbes; technical innovations including biochemical sensors and remote sensing tools, and science-policy interfaces for information sharing amongst farmers and through international organizations such as the Food and Agriculture Organization of the United Nations and CGIAR (Consultative Group for International Agricultural Research. (Summary by Mary Williams @PlantTeaching) Nat. Rev. Microbiol. 10.1038/s41579-023-00900-7