Research Blog

Huot et al. describe how elevated temperature (30 °C) enhances Arabidopsis thaliana disease susceptibility to the bacteria Pseudomonas syringae pv. tomato DC3000 (Pst DC3000): this includes an increase of bacterial type III secretion suggesting that increased Pst DC3000 virulence at 30°C is linked…

When grown at high density (HD), plants compete for nutrients, water and light. Guo and collaborators characterized Arabidopsis gene expression under two different growth densities: seeds sown at low density (LD), 10 cm apart and high density (HD), 2 cm apart. RNA sequencing analysis showed that only…

Root angle determines the rooting depth and was recently associated with the VERNALIZATION1 locus. Using hexaploid wheat, Voss-Fels et al. mapped the root angle to the locus encoding the MADS-box transcription factor, which was previously associated with flowering time. The group found that the lines…

Three-dimensional organization of the genome is critical for proper gene expression. Comparison of the extremely compact genome of Arabidopsis with mammalian genomes revealed reduced local intra-chromosomal contacts (also know as Topologically Associated Domains, TADs) and fewer chromatin loops in the…

Many plants are polyploid, meaning that instead of the normal, diploid “2n” complement of chromosomes (one from each parent), they have more than 2n. Following whole-genome duplication, redundancy can allow the duplicated regions to diverge or become silenced. In some cases, silencing occurs preferentially…

Increased leaf vein density is considered to be a key early step in the evolution of C4 photosynthesis.  Feldman et al. analyzed five mutants with high vein densities in the C3 crop rice to determine if photosynthetic assimilation was improved.  The mutants all had higher photosynthetic rates under…

Manganese is a micronutrient essential for the function of several proteins including manganese superoxide dismutase (localized in the peroxisome and mitochondria) and the photosystem II reaction center (localized in the chloroplast). Mn is transported via NRAMP (Natural Resistance-Associated Macrophage…

Plastids, the cellular sites for light reaction of photosynthesis, have a reduced genome which is circular and double stranded, ranging in the size from about 100 to 200 Kb. Some exceptions to this circular nature of plastid genomes are found in some groups of phytoplanktons, namely dinoflagellates,…