Tag: Transcriptomics

Panomics, an approach integrating multiple ‘omics’ datasets such as genomics, transcriptomics, metabolomics, and phenomics, has seen rapid advancement in recent years due to technological improvements, particularly in genomics. This review focuses on the recent developments in panomics-driven gene…

Barley is a globally important cereal crop, so understanding barley grain development is of much interest. Here, Kovacik et al. investigated transcriptional changes in barley grains at five points across development, 4, 8, 16, 24 and 32 days after pollination. For each time point, grains were manually…

In recent years, single-cell RNA sequencing (scRNA-seq) and single-nuclei RNA sequencing (snRNA-seq) techniques have revolutionized plant biology by enabling the identification of novel cell types, modeling developmental trajectories, and analyzing transcriptional activity at the cellular level. However,…

Marchantia’s power as a model organism continues to grow! Here, Ramoni et al. have investigated the expression pattern of the proximal promoters of most of its 450 transcription factor (TF)-encoding genes. The promoter elements were fused to nuclear-localized fluorescent reporters and introduced into…

Functional genomic studies across plants are incomplete without deciphering the putative gene functions in model as well as non-model plants. With an aim to facilitate gene function identification and cross-species expression analysis, Sreedasyam et al. describe the Joint Genome Institute (JGI) Plant…

Bacteria can cause plant diseases by secreting small molecules called effectors. Studies of these effectors on host plants mostly have not accounted for the cellular complexity of plant tissues. The difficulty of detecting and isolating effector-recipient cells means that scientists mostly use bulk-infected…

Palos et al. identify thousands of new long intergenic noncoding RNAs using public data.  By Kyle Palos and Andrew Nelson  Background: All plants have thousands of genes in their genomes that contribute to plant form and function. While the functional “end-state” of many of these genes are…

The ability to analyze the information contained within a single cell, for example through single-cell RNA sequening (scRNA-seq) presents exciting possibilities to biologists. Building on this and similar technologies, the Plant Cell Atlas (PCA) (www.plantcellatlas.org/) has the goal of creating an information…