Xufeng Wang: The Plant Cell Author Profile

Xufeng Wang, co-first author of “INDETERMINATE1 autonomously regulates phosphate homeostasis upstream of the miR399-ZmPHO2 signaling module in maize”

Current Position: Assistant Project Scientist, Botany and Plant Sciences, University of California, Riverside

Education: Ph.D., China Agricultural University, China

Non-scientific Interests: basketball, fishing

Brief biography: I started my academic studies under the guidance of Prof. Feng Tian at China Agricultural University in 2011. My research was mainly focused on maize quantitative genetics and bioinformatics. We comprehensively assessed the gene expression variation by sequencing the transcriptome of a large maize-teosinte experimental population, identified eQTL controlling gene expression, constructed gene regulatory network, and finally dissect the regulatory divergence between maize and teosinte. After receiving the Ph.D. degree in 2017, I joined the lab of Prof. Lin Liu at Shenzhen University as a Postdoctoral Fellow and continued my research on maize epigenetics. I worked on exploring the microRNA (miR399) functions in maize phosphate homeostasis. Maize is an important crop and cultivated widely for both staple food and industrial usage. Phosphorus is a major constituent of the fertilizers required to sustain high maize yields, however the world phosphorus resources are quickly diminishing and may be exhausted in the near future. Thus, it is vital to elucidate the underlying molecular mechanisms of phosphorus acquisition and utilization in maize to develop varieties with high phosphorus use efficiency. Despite the crucial roles of miR399 and PHO2 in regulating phosphate acquisition and translocation, the regulatory pathway upstream of miR399-PHO2 is not fully understood, especially in maize. Our work reveals that the transcription factor INDETERMINATE1 (ID1) functions as an autonomous upstream regulator to suppress the transcription of ZmMIR399 genes by directly binding to ZmMIR399 promoters, thus decreasing the accumulation of mature miR399 and alleviating the cleavage of the ZmPHO2 transcript and ultimately contributing to the maintenance of phosphate homeostasis in maize. Now, I am an Assistant Project Scientist in Prof. Xuemei Chen’s lab at University of California, Riverside, focusing on the studies of microRNA biogenesis in Arabidopsis.

姓名:王旭峰

目前职位:加州大学河滨分校,项目助理研究员

学历:中国农业大学博士

兴趣爱好:篮球、钓鱼

个人简介: 我于2011年进入中国农业大学,在田丰教授的指导下开始学术研究,主要从事玉米数量遗传学和生物信息学方面的研究。我们通过对一个玉米-大刍草重组自交系群体进行转录组测序,全面评估了基因表达变异,确定了控制基因表达的 eQTL,构建了基因表达调控网络,最后剖析了玉米和其祖先种大刍草之间的调控差异。获得博士学位后,我于2017年加入深圳大学植物表观遗传研究团队刘琳教授课题组做博士后,继续从事玉米表观遗传学方面的研究。我致力于探索 microRNA (miR399) 在玉米磷稳态调控中的功能。玉米是一种重要的粮食作物,如今已经在全世界范围内被广泛种植。磷是维持玉米高产所需肥料的主要成分之一,然而磷资源正在迅速减少,并可能在不久的将来被耗尽。因此,阐明玉米磷获取和利用的分子机制对于培育磷高效品种具有重要意义。尽管 miR399 和 PHO2 在调节磷酸盐获取和转运中起着至关重要的作用,但 miR399-PHO2 上游的调节途径尚不完全清楚,尤其是在玉米中。我们的工作表明,转录因子 INDETERMINATE1 (ID1) 作为一个自主的上游调节因子,通过直接结合 ZmMIR399 启动子抑制了 ZmMIR399 基因的转录,从而减少了成熟 miR399 的积累并减轻了 ZmPHO2 转录产物的切割,最终有助于玉米中磷稳态的维持。现在,我是加州大学河滨分校陈雪梅教授实验室的项目助理研究员,主要从事拟南芥中microRNA生物合成的研究。

Huixue Dong: The Plant Cell First Author

Huixue Dong, first author of “GSK3 phosphorylates and regulates the Green Revolution protein Rht-B1b to reduce plant height in wheat”

Current Position: Lecturer, Triticeae Research Institute, Sichuan Agricultural University, China

Education: Ph.D., Chinese Academy of Agricultural Sciences, China

Non-scientific Interests: Reading; Watching movie

Brief bio: I joined the lab of Prof. Jiaqiang Sun at Chinese Academy of Agricultural Sciences in 2015 to pursue my Ph.D. studies. My research was mainly focused on the mechanism underlying wheat plant height. We found that TaCOLD1 acts as a novel regulator of plant height through interfering with the formation of heterotrimeric G protein complex in bread wheat. This study was published on Plant Biotechnology Journal in 2019 (I served as the first author). Recently, we reveal that the GSK3/SHAGGY-like kinase TaGSK3 interacts with and phosphorylates the Green Revolution protein Rht-B1b to favor it in reducing wheat plant height. The phosphorylation by TaGSK3 may enhance the activity and stability of Rht-B1b. Also, TaGSK3-mediated plant growth repression requires the DELLA proteins. Our results shed light on the activation mechanism of Green Revolution protein Rht-B1b. After receiving the Ph.D. degree, I started to work in Triticeae Research Institute of Sichuan Agricultural University in 2022. My research aims to understand the high temperature effect on cereals’ seed dormancy and germination.

第一作者: 董慧雪,发表论文 “GSK3 phosphorylates and regulates the Green Revolution protein Rht-B1b to reduce plant height in wheat”

目前职位: 四川农业大学,小麦研究所,讲师

教育经历: 中国农业科学院,博士

兴趣爱好: 阅读;电影

个人简介: 我于2015年加入中国农业科学院进行硕博连读,师从孙加强研究员。我的主要研究方向是解析小麦株高的调控机制。我们发现TaCOLD1作为一种新的株高调节因子,可能通过干扰小麦异三聚体G蛋白复合物的形成来调控小麦株高。该研究以第一作者发表在《Plant Biotechnology Journal》上。最近,我们揭示了GSK3/SHAGGY激酶TaGSK3与绿色革命蛋白Rht-B1b相互作用并磷酸化Rht-B1b,而Rht-B1b被磷酸化后有利于其降低小麦株高。TaGSK3介导的磷酸化可以增强Rht-B1b的活性和稳定性。此外,TaGSK3的生长抑制作用依赖于DELLA蛋白的生物学功能。我们的研究结果揭示了一个可能的Rht-B1b激活机制,为小麦绿色革命蛋白的研究提供了新见解。博士毕业后,我加入四川农业大学小麦研究所工作,主要从事高温对谷物种子休眠和萌发的影响。

 

Xiaojing Dong: The Plant Cell First Author

Xiaojing Dong, first author of “14-3-3 proteins facilitate the activation of MAP kinase cascades by upstream immunity-related kinases”

Current Position: Research Assistant, Institute of Genetics and Developmental Biology

Education: Ph.D., China Agricultural University, China

Non-scientific Interests: Music, Movie, Swimming

Brief biography: I joined the lab of Prof. Dingming Kang and Prof. Jigang Li at China Agricultural University in 2014 to pursue my Ph.D. studies and  receiving a Ph.D. degree in 2020. Inspired by a series of studies on immune kinases, I decided to join Prof. Jian-Min Zhou’s lab in the Institute of Genetics and Developmental Biology to study signal transduction in plant immunity. By examining candidate interactors of immunity-associated receptor-like cytoplasmic kinases (RLCKs), I discovered a key role of 14-3-3 proteins GRF6 and GRF8 in pattern-triggered immunity, which positively contribute to resistance to both anti-bacterial and anti-fungal immunity in Arabidopsis. My study suggests that these 14-3-3 proteins directly interact with MAPKKK5 to enable their activation by upstream RLCKs. I am excited to share the findings with colleagues in the Plant Cell.

 

姓名:董晓静

现在职位:助理研究员,中国科学院遗传与发育生物学研究所

教育经历:中国农业大学农学博士

兴趣爱好:音乐,电影,游泳

个人简介:我于2014年进入中国农业大学硕博连读,师从康定名教授和李继刚教授。毕业后,我十分荣幸进入中国科学院遗传与发育生物学研究所周俭民研究员实验室从事博士后研究工作。我的研究方向是植物免疫信号转导机制研究。我们的研究发现14-3-3家族的两个亚基GRF6和GRF8,作为抗病基因在植物PTI免疫中发挥关键作用。此外,我们发现GRF6和GRF8能够直接与多个RLCKs和MAPKKKs相互作用,并且对激活MAPK级联反应至关重要。有意思的是,我们的结果显示GRF6可以直接与MAPKKK5的C端发生互作进而增强PBL19和MAPKKK5的相互作用,揭示了14-3-3蛋白在植物免疫信号转导中调节RLCK-MAPK模块的一种前所未知的机制。我非常荣幸能够在Plant Cell杂志与各位同行分享我的研究结果。

Xiaowen Shi: Plant Physiology First Author

Xiaowen Shi, co-first author of “SCARECROW maintains the stem cell niche in Arabidopsis root by ensuring telomere integrity

Current Position: Ph.D. Candidate, Northwest A & F University

Education:

2019.09 –        Northwest A & F University, Ph.D. Candidate

2015.09 – 2018.06 Shanxi Agriculture University, Master of Biology

Non-scientific Interests: reading, running, traveling

Brief biography:

I joined the laboratory of Professor Hongchang Cui in 2018 and have been studying the mechanism underlying root growth and development. As the co-first author of this study, I have conducted the following work: 1) Repeated some of the experiments conducted by Bingxin Wang: (such as examination of the anatomy and marker gene expression in mutant roots, and testing the interaction between TEN1 and STN1. 2) Determined the extent of DNA damage in the scr mutant by comet assay. 4) Assessed telomere integrity by a quantitative PCR-based assay. In addition, I have been characterizing the role of AT-Hook transcription factors in root development and leaf senescence in Arabidopsis.

 

姓名:石晓雯

目前职位:西北农林科技大学,博士研究生

教育经历:2019.09至今,西北农林科技大学,博士研究生在读

2015.09至2018.06,山西农业大学,硕士研究生

兴趣爱好:阅读,徒步,旅行

个人简介:自2018年加入崔洪昌教授课题组以来,一直致力于根生长发育的调控机制研究。作为本研究的共同第一作者,我参与的工作有:1)重复验证了王冰昕做过的一些实验,例如检测突变体根的细胞结构和标记基因的表达,以及验证TEN1和STN1之间的相互作用;2)通过彗星实验检测scr突变体中基因组受损程度;3)通过端粒RT-qPCR检测端粒是否完整。此外,我的另一研究方向是,AT-Hook转录因子调控拟南芥根发育和叶片衰老的分子机理的研究。

 

Bingxin Wang: Plant Physiology First Author

Bingxin Wang, co-first author of “SCARECROW maintains the stem cell niche in Arabidopsis root by ensuring telomere integrity”

Current Position: PhD Candidate at Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Education: 2015-2019, Northwest A & F University, Biotechnology, Bachelor

2019-2021, Northwest A & F University, Biochemistry and Molecular Biology, Master

Non-scientific Interests: Thread wrapping flower, travelling

Brief bio:

I was admitted to Northwest A&F University and started my research on life science in 2015. During my undergraduate and graduate studies, I embarked on a research project on plant stem cell renewal in the laboratory of Professor Hongchang Cui. The main purpose of my research is to understand how SCARECROW, a transcription factor well known for its role in root growth and development, maintains the stem cell niche in Arabidopsis root. Our results suggest that SCR promotes the expression of telomere protecting factors, thus maintaining the root stem cells by ensures genome integrity. This paper is my first publication as a first author, and I hope it is just a good beginning of my scientific career.

姓名:王冰昕

现在职位:中国科学院  遗传与发育生物学研究所 2021级博士研究生

教育经历:

2015.09-2019.06,西北农林科技大学,生物技术专业,学士

2019.09-2021.06,西北农林科技大学,生物化学与分子生物学,硕士

兴趣:缠花,旅行

个人简介:

我于 2015 年考入西北农林科技大学,从此开始了生命科学相关的学习。本科及硕士期间,我一直在崔洪昌教授实验室进行科研训练,我的课题的主要目的是阐明SCARECROW这个与根生长和发育相关的转录因子调控根尖干细胞龛维持的分子机制。 我们的实验结果表明,SCARECROW可以维持拟南芥端粒相关基因的表达,保证基因组的完整性,进而保障干细胞龛处于一个稳定状态。此篇文章是我作为第一作者发表的首篇文章,希望可以成为今后科研学习道路的一个良好开端。

A new road to resolve DNA replication stress

Ting Pan et al. reveal a molecular mechanism to deal with DNA replication stress in Arabidopsis. The Plant Cell (2022).

Ting Pan, Shan Gao, Xiaoyu Cui, Lili Wang and Shunping Yan

College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China

 Background: DNA replication is a fundamental process for all organisms. Many exogenous and endogenous factors inhibit DNA replication and affect plant growth and development. When DNA replication has problems, cells try to stop progression of the cell cycle to allow themselves enough time to solve these problems. The protein kinase WEE1 can phosphorylate and promote the polyubiquitination and degradation of F BOX-LIKE17 (FBL17), an E3 ubiquitin ligase required for cell cycle progression. The E3 ubiquitin ligase Anaphase-promoting complex/cyclosome (APC/C) promotes cell cycle progression from metaphase to anaphase by promoting protein degradation.

Question: Which E3 ubiquitin ligase mediates the polyubiquitination of FBL17?

Findings: We found that the polyubiquitination and degradation of FBL17 requires two subunits of APC/C, APC10 and CELL DIVISION CYCLE 20 (CDC20). Mechanistically, WEE1 phosphorylates APC10, which enhances the interaction between FBL17 and CDC20 to promote the polyubiquitination and degradation of FBL17. In addition, the loss of CDC20 or APC10 compromises plant’s ability to deal with DNA replication stress, which is partially rescued when FBL17 is mutated.

Next steps: We are working to reveal other mechanisms for DNA replication stress responses by identifying more substrates of WEE1 and APC/C.

Reference: 

Ting Pan, Shan Gao, Xiaoyu Cui, Lili Wang, Shunping Yan (2022). APC/CCDC20 targets SCFFBL17 to activate replication stress responses. https://doi.org/10.1093/plcell/koac360

Casting light on maize inflorescence development under shade

Kong, Li, Xue, Wei, et al. investigate the regulatory modules of tassel and ear development in response to simulated shade in Zea mays.

By Dexin Kong1, Qing Liu1 and Haiyang Wang1,2

1State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China.

2Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China.

Background: Maize inflorescence development is a major determinant of grain yield. Increasing planting density is an effective means to increase maize yield by increasing the number of ears harvested. However, high-density planting could lead to abnormal inflorescence development, resulting in reduced grain yield per plant. The regulatory networks of maize inflorescence development in response to high-density planting remain poorly understood.

Questions: How do maize plants perceive and respond to shade signals? How is inflorescence development altered in response to shade? What are the regulatory networks that reprogram the developmental time course of the inflorescence in response to shade?

Findings: We compared the gene expression changes that occur during male and female inflorescence development under simulated shade treatments and normal light conditions. We identified a large set of genes that are co-regulated by developmental progression and simulated shade treatments. These genes are enriched in plant hormone signaling pathways and transcription factors. Through network analysis, we demonstrated that three homologous SPL transcription factors (UB2, UB3, and TSH4) act as a central regulatory node that controls maize inflorescence development in response to shade. Loss-of-function mutants lacking these transcription factors exhibited reduced sensitivity to simulated shade treatments. We experimentally verified that BIF2 (encoding a key regulator of auxin signaling) and ZmTCP30 (encoding a transcription factor) are direct targets of UB2/UB3/TSH4, and that they act downstream of UB2/UB3/TSH4 to regulate maize inflorescence development. Our results unravel a regulatory network centered on UB2/UB3/TSH4 that functions in the transcriptional reprogramming of inflorescence development in response to shade.

Next steps: We plan to identify additional targets of UB2/UB3/TSH4 for functional studies and look for their shade-tolerant elite alleles for molecular breeding of high-density tolerant maize cultivars.

Dexin Kong, Changyu Li, Weicong Xue, Hongbin Wei, Hui Ding, Guizhen Hu, Xiaoming Zhang, Guisen Zhang,Ting Zou, Yuting Xian, Baobao Wang, Yongping Zhao, Yuting Liu, Yurong Xie, Miaoyun Xu, Hong Wu, Qing Liu and Haiyang Wang. (2023). UB2/UB3/TSH4-anchored transcriptional networks regulate early maize inflorescence development in response to simulated shade https://doi.org/10.1093/plcell/koac352

Shedding light on Arabidopsis seed oil biosynthesis

Deslandes-Hérold et al. explore the integration of the PRK/Rubisco shunt into green embryo photosynthesis and metabolism.

Gabriel Deslandes-Hérold, Melanie R. Abt, and Samuel C. Zeeman, ETH Zurich

Background: Light promotes the accumulation of storage lipids during development of oilseeds with green embryos. This has been explained by embryonic photosynthesis generating cofactors that can power an energy-consuming metabolic pathway known as the PRK/Rubisco shunt that is distinct from the Calvin cycle operating in leaves. There is good biochemical evidence for the existence of this pathway in Brassicaceae; however, the extent of its biological significance has not been assessed genetically. Here, we use a refined genetic complementation approach in Arabidopsis to study the role of PRK, specifically in the proposed pathway in its green seeds.

Questions: How can we study the PRK/Rubisco shunt genetically, and what is its quantitative influence on storage oil accumulation in green, developing Arabidopsis seeds?

Findings: As an enzyme integral to the Calvin cycle, the complete loss of PRK is detrimental to plant growth. However, because heterozygous PRK/prk plants are phenotypically normal, we used them to establish a plant line generating prk embryos in parallel with complemented siblings, which can be differentiated using a fluorescent marker. The absence of PRK throughout embryogenesis reduced the oil content in the embryo by one third; more than expected from theoretical calculations of the contribution of the PRK/Rubisco shunt. Several lines of evidence further indicate tight metabolic integration of the shunt into green embryo photosynthesis and metabolism.

Next steps: Our observations provide insight into the integration of the PRK/Rubisco shunt into Arabidopsis embryo metabolism. We would like to understand better how it is coordinated with pathways leading to other storage compounds, how it is regulated genetically and biochemically, and how this knowledge can help oil crop improvement.

Reference:

Gabriel Deslandes-Hérold, Martina Zanella, Erik Solhaug, Michaela Fischer-Stettler, Mayank Sharma, Léo Buergy, Cornelia Herrfurth, Maite Colinas, Ivo Feussner, Melanie R. Abt, Samuel C. Zeeman (2023). The PRK/Rubisco shunt strongly influences Arabidopsis seed metabolism and oil accumulation, affecting more than carbon recycling. https://doi.org/10.1093/plcell/koac338

Helping out a neighbor: What FAMA tells us about specialization among stomatal genes across different species

Author et al. explore the genes involved in making stomata in a temperate grass.

Katelyn Hansen-McKown and Dominique Bergmann, Stanford University School of Medicine, Stanford University and Howard Hughes Medical Institution.

Background: Plants are essential players in global carbon and water cycling. The structures central to this role are stomata, pores on leaf surfaces. Plants open and close their stomata depending on environmental conditions to regulate gas exchange, and can adjust the number of stomata they make. Tuning stomatal numbers and activity can improve water use efficiency and drought tolerance. Typically, two guard cells flank a stomatal pore, but grasses have additional subsidiary cells flanking each guard cell, making their stomata even better at responding to environmental cues. What genes are involved in creating such magnificent stomata?

Question: We knew that homologues of three stomatal genes first found in Arabidopsis–SPCH, MUTE, and FAMA–were in other plants, and that SPCH and MUTE could take on unexpected roles across species. The sequence of FAMA from Brachypodium distachyon, a relative of wheat, differs in intriguing ways from Arabidopis FAMA, so we asked what roles BdFAMA plays in Brachypodium stomatal development.

Findings: BdFAMA promotes guard cell fate in the final step of stomatal development, but unexpectedly, is “on” much earlier, overlapping with the preceding gene, BdMUTE. Other grasses die without MUTE activity, but in Brachypodium, this earlier expression of BdFAMA can compensate for the absence of MUTE. In Arabidopsis, BdFAMA function can replace both MUTE and FAMA, but cannot rescue myrosin cells, a specialized cell type in the Brassica family. So, some of FAMA’s roles are the same across different plants with unique stomata, but other roles have species-specific nuances. 

Next steps: To improve crops, we need to understand how plant cells and organs are made and specialized. This work in the temperate grass Brachypodium provides a framework that future scientists can use to connect environmental signals to stomatal development and regulation and contribute to improving agriculturally significant grasses like wheat and barley.

Katelyn H. McKown, M. Ximena Anleu Gil, Andrea Mair, Shou-Ling Xu, Michael T. Raissig, and Dominique C. Bergmann (2023) Expanded roles and divergent regulation of FAMA in Brachypodium and Arabidopsis stomatal development. https://doi.org/10.1093/plcell/koac341