Entries by Mary Williams

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 ($)

Polycomb repressive complex 2 (PRC2) stably regulates gene expression by initiating repressive histone methylation (specifically,  trimethylation of histone H3 at Lys27, H3K27me3). Xiao et al. investigated how PRC2 targets the genes it silences. They identified several Polycomb response elements (PREs) that are binding sites for transcription factors which interact with PRC2. When selected PREs were […]

Zygotic genome activation occurs shortly after fertilization in maize

A plant’s life begins with the fusion of haploid egg and sperm cells to produce a diploid zygote. Many of the processes that control early development are under the control of the maternal genome, but at some point there is a shift towards zygotic control. Chen et al. investigated when this shift occurs through transcriptomic […]

Emergence of subgenome dominance across time and ploidy

Many plants are not simple diploids (two copies of each chromosome) but are instead are the result of various forms of polyploidization (for example, whole-genome duplication or interspecific hybridization). Polyploidization can disrupt well-established controls over gene expression levels, transposon silencing and other epigenetic processes. Previous studies have indicated that one of the two geneomes (known […]

Tomato fruit weight controlled by Cell Size Regulator

Mu et al. mapped a QTL previously shown to control fruit weight in tomato, and named the responsible gene Cell Size Regulator (CSR). They found that CSR-D, the derived allele, increases cell size and is widespread in Solanum lycopersicum var. lycopersicum, but not in ancestral tomatoes with smaller fruit. The encoded protein is uncharacterized but […]

Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement

Cultivated apples (Malus domestica) trace their roots to Kazakhstan 4000 – 10,000 years ago, and since then have been propagated, transported, hybridized to other Malus species, and domesticated. Duan et al. sequenced more than 100 diverse accessions to trace apple’s history and identify loci subjected to selection. “During the domestication process, cultivated apples retained the […]

Temperature increase reduces global yields of major crops in four independent estimates ($)

Although future negative impacts on crop yields expected from rising temperature are well known to plant scientists, there are still some members of the broader public that need to be made aware of this problem. Zhao et al. combined four different methods of assessing the impact of increasing temperatures on yields of wheat, rice, maize, […]

Publishing with objective charisma: Breaking science’s paradox ($)

Doublday and Connell ask whether scientific writing has to be so dull, and conclude that there is room for improvement. They are quick to argue that sensationalism and inaccuracy are not acceptable, but that it is possible for scientific writing to be both objective and charismatic. However, for the culture of scientific writing to change, […]

What We’re Reading: August 25th

Review: Auxin signaling Leyser summarizes our current understanding of the what, how and why of what auxin does (and doesn’t) do. For example, she points out that, “Auxin does not instruct cells to do anything in particular, but rather it influences the  behavior of cells according to their pre-existing identity.” She also observes that cells […]

Distinct phases of Polycomb silencing to hold epigenetic memory of cold in Arabidopsis ($)

Some plants can only flower after a cold period. This cold period has been shown to cause epigenetic gene silencing of an inhibitor of flowering, which in Arabidopsis is encoded by FLC. Yang and Berry et al. explore the mechanism by which FLC is epigenetically silenced in response to cold. Previous studies showed that the […]