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Stony hard phenotype in peach due to transposon insertion into YUCCA ($) (Plant J)
Plant Science Research WeeklyFruit softening in melting-flesh peaches is triggered by a major accumulation of ethylene at the late stage of ripening. Existence of stony hard peaches showing inhibition of fruit softening has been correlated with low levels of indole-3-acetic-acid inducing low levels of ethylene, but the underlying…
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DNA methylation footprints during soybean domestication and improvement (Genome Biol)
Plant Science Research WeeklyCrop domestication relies on harnessing the natural genomic diversity present in the cultivated population. The contribution of genetic variation for selection and improvement of traits in plants has been extensively studied. Besides this, variation in epigenetic components such as DNA methylation offers…
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Early and transient loss of transposon control in Arabidopsis shoot stem cells (bioRxiv)
Plant Science Research WeeklyPostembryonic development in plants relies on stem cells located within the shoot apical meristem. Male and female gametes are descendants of those stem cells and maintenance of genome stability in this pool of cells is thus fundamental. In-depth molecular analysis has so far been hindered by the tedious…
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Review: Spontaneous epimutations in plants (New Phytol)
Plant Science Research WeeklySpontaneous epimutations are stochastic and heritable changes of DNA methylation in genomes. In this review, Johannes and Schmitz discuss the molecular origins of spontaneous epimutations in plants as well as their functional and phenotypical consequences. The authors highlight that spontaneous epimutations…
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Non-CG methylation mechanism in Marchantia polymorpha ($) (Plant Cell Physiol.)
Plant Science Research WeeklyPrevious reports have shown that M. polymorpha DNA methylation status varies during its life cycle and it contains only one copy of the METHYLTRANSFERASE1 (MET1) orthologous gene. MET1 is responsible of CG methylation in angiosperms. Ikeda and collaborators generated MpMET mutants using the CRISPR/CAS9…
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Review: The role of plant epigenetics in biotic interactions (New Phytol.)
Plant Science Research WeeklyPlant phenotypes are influenced by the nature and intensity of biotic interactions. While the role of genetic diversity has been extensively studied, contribution of epigenetics to plant fitness and response to biotic stresses remains elusive. The authors review here the most recent literature about…
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Experimental Reproducibility 101 (Part 1)
BlogThis article is the first of three and is based on a workshop called "Reproducibility for all" presented at PlantBio18 by Benjamin Schwessinger, Sonali Roy, and Lenny Teytelman.
It’s late. You’re the last person in the lab now. The security personnel, who knows your cat by name, wishes you good…
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What We're Reading: October 19th
WWR Full PostThis week's edition is guest edited by Matthias Benoit, a postdoctoral Research Associate at The Sainsbury Laboratory University of Cambridge. His research focuses on the developmental, environmental and epigenetic regulation of tomato retrotransposons. His favorite models of study are fruit development…
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Recognizing Plant Physiology first authors: Cindy L. Sigler
Plant Physiology, Plant Physiology: Author ProfilesCindy L. Sigler, first author of Parts-prospecting For a High-efficiency Thiamin Thiazole Biosynthesis Pathway
Current Position: Graduate Research Fellow, University of Florida, Gainesville, Florida
Education: B.S. (2016) in Plant Science, University of Florida, Gainesville Florida
Non-scientific…