Tag: Microbiome

Amplicon sequencing of microbial DNA is a gold standard for analyzing the relative abundance of microbes in host-associated microbiomes. To gain more accurate insights into microbiome changes, it is crucial to know the absolute abundance of microbes, which can be analyzed by integrating relative abundance…

Iron is an essential element for most living organisms, including plant-associated bacteria. As iron is insoluble in most soils, many soil-borne bacteria scavenge iron using siderophores, a chemically diverse group of secondary metabolites with a high affinity for iron. Siderophores are known to drive…

Antagonist interactions between microbes of the phyllosphere stabilize the microbiome and some “hub” organisms can exert strong effects on community structure. The yeast family Ustilaginales contains several apathogenic species that are microbial antagonists that can inhibit infection from diverse…

N2-fixing rhizobia bacteria are able to establish symbiotic interactions with legumes in specialized organs called root nodules. Identifying elite rhizobia that are both competitive for nodule occupancy and effective in N2 fixation in agricultural environments is crucial for maximizing the yield of legumes.…

The large apoplastic intercellular space of plant leaves creates nutrient-rich niches for microbial colonization. To date, whether and how plants control the composition of leaf microbiota is poorly understood. Chen et al. reported that the Arabidopsis quadruple mutant (min7fls2efrcerk1 or mfec)…

Roots exude metabolites that affect the composition and activities of their microbiome. Korenblum et al. show that the microbiome in turn affects metabolite exudation, not only locally but also systemically (shown using a split-root system). They call this response SIREM: systemically induced root exudation…

My dog is a fantastic companion, but it’s obvious he could never fend for himself; domestication has eliminated his ancestral survival skills. Likewise, most crop plants thrive under human care, but have lost many of the traits that would help them survive in harsh conditions. Preece and Peñuelas…

Study of the plant microbiome can contribute to sustainable agricultural systems through improvements to plant health and nutrition. One goal has been to select and design microbiome communities for specific functions. In a recent article, Morella et al. have used an experimental evolution approach to…