Orchidstra 2.0 – A transcriptomics resource for the orchid family ($)
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There are more than 25,000 species in the Orchidaceae, the orchid family. Chao et al. have updated and restructured the Orchidstra database, which now houses more than half-a million protein-coding genes from 18 species (12 genera and five subfamilies). Access and explore it at http://orchidstra2.abrc.sinica.edu.tw.…
MarpoDB: An open registry for Marchantia polymorpha genetic parts
Plant Science Research Weekly, ResearchMarchantia polymorpha (a liverwort) is a living relative of the earliest terrestrial plants. As it has a simple genome and morphology and is readily transformable, it provides a good platform for synthetic biology (see https://www.openplant.org/marchantia/). Delmans et al. have designed an “engineering-oriented”…
Protein degradation rate in Arabidopsis thaliana leaf growth and development
Plant Science Research Weekly, ResearchProtein synthesis is an energetically-demanding process, made even more so by the fact that many proteins have a short half-life and must be repeatedly synthesized and degraded. Using a 15N-labeling approach, Li et al. determined the in vivo half-life for more than 1200 Arabidopsis leaf proteins; these…
Contrasting phytochrome responses in wild plants
Plant Science Research Weekly, ResearchShade avoidance syndrome (SAS) is a growth pattern in which stem and petiole elongation is stimulated in plants exposed to vegetative shade, as revealed through a low ratio of red to far-red light perceived by phytochrome; red light is absorbed by chlorophyll, leading to a far-red enrichment in light…
Breakthrough Technology: High-throughput phenotyping and QTL mapping of maize
Plant Science Research Weekly, ResearchZhang et al. identify the goal of high-throughput phenotyping as to “bridge the gap between genomics and phenomics”. In this Breakthrough Technology report, they used automatic phenotyping to quantify more than 100 traits across 16 developmental stages in a maize recombinant inbred line population,…
Review: Coastal wetland blue carbon
Plant Science Research Weekly, ResearchCoastal wetlands (mangroves, tidal marshes and seagrasses) are important carbon sinks, in both biomass and soils. Howard et al. describe and quantify the carbon flow through these different coastal ecosystems, and their potentials as long-term carbon sinks. Unlike the open ocean, these coastal ecosystems…
Review: Developmental phase transitions in oxygen status ($)
Plant Science Research Weekly, ResearchHypoxia is a condition in which oxygen availability is insuffient to support normal cellular functions. Hypoxia is often associated with stress such as flooding, and responses to hypoxia include increased glycolytic activity and fermentation. Considine et al. review the role lf hypoxia and tissue oxygen…
Review: Seed Coating: Science or Marketing Spin? ($)
Plant Science Research Weekly, ResearchTo meet the Sustainable Development Goal 2, Zero hunger, degraded ecosystems should be brought under cultivation with quality seeds that have good germination and produce healthy seedling for vigorous plant population establishment. Seed technologies like seed coating with inoculants, germination promoters,…
Review: Plant diversity change across scales during the Anthropocene ($)
Plant Science Research Weekly, ResearchWe’re living in the Anthropocene, a term that reflects the profound impact of human activities on Earth’s geology and ecology. A hallmark of the Anthropocene is a decrease in biodiversity due to an increase in the rate of extinctions. Vellend et al. examine the plant diversity has been affected…